#PAGE_PARAMS# #ADS_HEAD_SCRIPTS# #MICRODATA#

Molecular detection of infectious agents in the pathology laboratory


Authors: Kateřina Černá 1,2;  Radek Šíma 1,2;  Jana Němcová 1,2,3
Authors‘ workplace: Šiklův ústav patologie LF UK a FN Plzeň 2 Bioptická laboratoř s. r. o., Plzeň 3 Biomedicínské centrum Lékařské fakulty v Plzni
Published in: Čes.-slov. Patol., 60, 2024, No. 4, p. 169-175
Category: Reviews Article

Overview

Using molecular methods, infectious organisms of viral, bacterial and fungal origin, as well as protozoa and helminths, can be detected. Molecular methods detect specific segments in the nucleic acid sequences of infectious agents and therefore do not require the maintenance of viability of the microorganisms of interest. Therefore, these methods can also be used for direct detection of infectious agents from fixed tissue, the most commonly available material in pathology. This short review article is based on more than 20 years of molecular microbiology within pathology and our aim is to present the possibilities of molecular detection of infectious organisms for pathological diagnosis.

Keywords:

pathology – Microbiome – molecular methods – PCR – infectious agents – FFPE


Sources
  1. Oba U, Kohashi K, Sangatsuda Y, et al. An efficient procedure for the recovery of DNA from formalin-fixed paraffin-embedded tissue sections. Biol Methods Protoc 2022; 7(1): bpac014.
  2. Van Dongen JJ, Langerak AW, Bruggemann M, et al. Design and standardization of pcr primers and protocols for detection of clonal immunoglobulin and t-cell receptor gene recombinations in suspect lymphoproliferations: Report of the biomed-2 concerted action bmh4-ct98-3936. Leukemia 2003; 17(12): 2257-2317.
  3. Lewinski MA, Alby K, Babady NE, et al. Exploring the utility of multiplex infectious disease panel testing for diagnosis of infection in different body sites: A joint report of the association for molecular pathology, american society for microbiology, infectious diseases society of america, and pan american society for clinical virology. The Journal of molecular diagnostics : JMD 2023; 25(12): 857-875.
  4. Mullegger RR, Glatz M. Skin manifestations of lyme borreliosis: Diagnosis and management. Am J Clin Dermatol 2008; 9(6): 355-368.
  5. Boudova L, Kazakov DV, Sima R, et al. Cutaneous lymphoid hyperplasia and other lymphoid infiltrates of the breast nipple: A retrospective clinicopathologic study of fifty-six patients. The American Journal of dermatopathology 2005; 27(5): 375-386.
  6. Marchetti G, Gori A, Catozzi L, et al. Evaluation of pcr in detection of mycobacterium tuberculosis from formalin-fixed, paraffin--embedded tissues: Comparison of four amplification assays. J Clin Microbiol 1998; 36(6): 1512-1517.
  7. Khosravi AD, Alami A, Meghdadi H, Hosseini AA. Identification of mycobacterium tuberculosis in clinical specimens of patients suspected of having extrapulmonary tuberculosis by application of nested pcr on five different genes. Front Cell Infect Microbiol 2017; 7(3.
  8. Shah KK, Pritt BS, Alexander MP. Histopathologic review of granulomatous inflammation. J Clin Tuberc Other Mycobact Dis 2017; 7(1-12.
  9. Asano S. Granulomatous lymphadenitis. J Clin Exp Hematop 2012; 52(1): 1-16.
  10. Rob F, Kaspirkova J, Juzlova K, Pesta M, Hercogova J. Lymphogranuloma venereum with only proximal rectal involvement mimicking inflammatory bowel disease: A potential diagnostic pitfall. J Eur Acad Dermatol Venereol 2017; 31(5): e264-e265.
  11. Procop GW, Wilson M. Infectious disease pathology. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2001; 32(11): 1589-1601.
  12. Barletta JM, Kingma DW, Ling Y, et al. Rapid in situ hybridization for the diagnosis of latent epstein-barr virus infection. Mol Cell Probes 1993; 7(2): 105-109.
  13. Svajdler M, Jr., Mezencev R, Kaspirkova J, et al. Human papillomavirus infection and p16 expression in the immunocompetent patients with extragenital/extraungual bowen’s disease. Diagnostic pathology 2016; 11(1): 53.
  14. Rodig SJ, Cheng J, Wardzala J, et al. Improved detection suggests all merkel cellcarcinomas harbor merkel polyomavirus. The Journal of clinical investigation 2012; 122(12):4645-4653.
  15. Krsek A, Baticic L, Sotosek V, Braut T. The role of biomarkers in hpv-positive head and neck squamous cell carcinoma: Towards precision medicine. Diagnostics (Basel) 2024; 14(13):
  16. Lockhart SR, Bialek R, Kibbler CC, et al. Molecular techniques for genus and species determination of fungi from fresh and paraffin-embedded formalin-fixed tissue in the revised eortc/msgerc definitions of invasive fungal infection. Clinical infectious diseases: an official publication of the Infectious Diseases Society of America 2021; 72(Suppl 2): S109-S113.
  17. Buitrago MJ, Aguado JM, Ballen A, et al. Efficacy of DNA amplification in tissue biopsy samples to improve the detection of invasive fungal disease. Clin Microbiol Infect 2013; 19(6): E271-277.
  18. Papparella S. [histology in diagnosis of parasitic diseases]. Parassitologia 2004; 46(1-2):157-158.
  19. Momcilovic S, Cantacessi C, Arsic-Arsenijevic V, Otranto D, Tasic-Otasevic S. Rapid diagnosis of parasitic diseases: Current scenario and future needs. Clin Microbiol Infect 2019; 25(3): 290-309.
  20. Liu Q, Wang ZD, Huang SY, Zhu XQ. Diagnosis of toxoplasmosis and typing of toxoplasma gondii. Parasit Vectors 2015; 8(292.
  21. Mcmanus DP. Current status of the genetics and molecular taxonomy of echinococcus species. Parasitology 2013; 140(13): 1617-1623.
Labels
Anatomical pathology Forensic medical examiner Toxicology
Login
Forgotten password

Enter the email address that you registered with. We will send you instructions on how to set a new password.

Login

Don‘t have an account?  Create new account

#ADS_BOTTOM_SCRIPTS#