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Site-Specific Phosphorylation of the DNA Damage Response Mediator Rad9 by Cyclin-Dependent Kinases Regulates Activation of Checkpoint Kinase 1


The mediators of the DNA damage response (DDR) are highly phosphorylated by kinases that control cell proliferation, but little is known about the role of this regulation. Here we show that cell cycle phosphorylation of the prototypical DDR mediator Saccharomyces cerevisiae Rad9 depends on cyclin-dependent kinase (CDK) complexes. We find that a specific G2/M form of Cdc28 can phosphorylate in vitro the N-terminal region of Rad9 on nine consensus CDK phosphorylation sites. We show that the integrity of CDK consensus sites and the activity of Cdc28 are required for both the activation of the Chk1 checkpoint kinase and its interaction with Rad9. We have identified T125 and T143 as important residues in Rad9 for this Rad9/Chk1 interaction. Phosphorylation of T143 is the most important feature promoting Rad9/Chk1 interaction, while the much more abundant phosphorylation of the neighbouring T125 residue impedes the Rad9/Chk1 interaction. We suggest a novel model for Chk1 activation where Cdc28 regulates the constitutive interaction of Rad9 and Chk1. The Rad9/Chk1 complex is then recruited at sites of DNA damage where activation of Chk1 requires additional DDR–specific protein kinases.


Vyšlo v časopise: Site-Specific Phosphorylation of the DNA Damage Response Mediator Rad9 by Cyclin-Dependent Kinases Regulates Activation of Checkpoint Kinase 1. PLoS Genet 9(4): e32767. doi:10.1371/journal.pgen.1003310
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1003310

Souhrn

The mediators of the DNA damage response (DDR) are highly phosphorylated by kinases that control cell proliferation, but little is known about the role of this regulation. Here we show that cell cycle phosphorylation of the prototypical DDR mediator Saccharomyces cerevisiae Rad9 depends on cyclin-dependent kinase (CDK) complexes. We find that a specific G2/M form of Cdc28 can phosphorylate in vitro the N-terminal region of Rad9 on nine consensus CDK phosphorylation sites. We show that the integrity of CDK consensus sites and the activity of Cdc28 are required for both the activation of the Chk1 checkpoint kinase and its interaction with Rad9. We have identified T125 and T143 as important residues in Rad9 for this Rad9/Chk1 interaction. Phosphorylation of T143 is the most important feature promoting Rad9/Chk1 interaction, while the much more abundant phosphorylation of the neighbouring T125 residue impedes the Rad9/Chk1 interaction. We suggest a novel model for Chk1 activation where Cdc28 regulates the constitutive interaction of Rad9 and Chk1. The Rad9/Chk1 complex is then recruited at sites of DNA damage where activation of Chk1 requires additional DDR–specific protein kinases.


Zdroje

1. HarperJW, ElledgeSJ (2007) The DNA damage response: ten years after. Mol Cell 28: 739–745.

2. HalazonetisTD, GorgoulisVG, BartekJ (2008) An oncogene-induced DNA damage model for cancer development. Science 319: 1352–1355.

3. DurocherD, JacksonSP (2001) DNA-PK, ATM and ATR as sensors of DNA damage: variations on a theme? Curr Opin Cell Biol 13: 225–231.

4. StrackerTH, UsuiT, PetriniJH (2009) Taking the time to make important decisions: the checkpoint effector kinases Chk1 and Chk2 and the DNA damage response. DNA Repair (Amst) 8: 1047–1054.

5. FitzGeraldJE, GrenonM, LowndesNF (2009) 53BP1: function and mechanisms of focal recruitment. Biochem Soc Trans 37: 897–904.

6. JungmichelS, StuckiM (2010) MDC1: The art of keeping things in focus. Chromosoma 119: 337–349.

7. O'DonovanPJ, LivingstonDM (2010) BRCA1 and BRCA2: breast/ovarian cancer susceptibility gene products and participants in DNA double-strand break repair. Carcinogenesis 31: 961–967.

8. WeinertTA, HartwellLH (1988) The RAD9 gene controls the cell cycle response to DNA damage in Saccharomyces cerevisiae. Science 241: 317–322.

9. SakaY, EsashiF, MatsusakaT, MochidaS, YanagidaM (1997) Damage and replication checkpoint control in fission yeast is ensured by interactions of Crb2, a protein with BRCT motif, with Cut5 and Chk1. Genes Dev 11: 3387–3400.

10. WillsonJ, WilsonS, WarrN, WattsFZ (1997) Isolation and characterization of the Schizosaccharomyces pombe rhp9 gene: a gene required for the DNA damage checkpoint but not the replication checkpoint. Nucleic Acids Res 25: 2138–2146.

11. O'ShaughnessyAM, GrenonM, GilbertC, TohGW, GreenCM, et al. (2006) Multiple approaches to study S. cerevisiae Rad9, a prototypical checkpoint protein. Methods Enzymol 409: 131–150.

12. BarbourL, BallLG, ZhangK, XiaoW (2006) DNA damage checkpoints are involved in postreplication repair. Genetics 174: 1789–1800.

13. de la Torre-RuizM, LowndesNF (2000) The Saccharomyces cerevisiae DNA damage checkpoint is required for efficient repair of double strand breaks by non-homologous end joining. FEBS Lett 467: 311–315.

14. Murakami-SekimataA, HuangD, PieningBD, BangurC, PaulovichAG (2010) The Saccharomyces cerevisiae RAD9, RAD17 and RAD24 genes are required for suppression of mutagenic post-replicative repair during chronic DNA damage. DNA Repair (Amst) 9: 824–834.

15. TohGW, O'ShaughnessyAM, JimenoS, DobbieIM, GrenonM, et al. (2006) Histone H2A phosphorylation and H3 methylation are required for a novel Rad9 DSB repair function following checkpoint activation. DNA Repair (Amst)

16. CortezD, WangY, QinJ, ElledgeSJ (1999) Requirement of ATM-dependent phosphorylation of brca1 in the DNA damage response to double-strand breaks. Science 286: 1162–1166.

17. EmiliA (1998) MEC1-dependent phosphorylation of Rad9p in response to DNA damage. Mol Cell 2: 183–189.

18. LouZ, Minter-DykhouseK, WuX, ChenJ (2003) MDC1 is coupled to activated CHK2 in mammalian DNA damage response pathways. Nature 421: 957–961.

19. RappoldI, IwabuchiK, DateT, ChenJ (2001) Tumor suppressor p53 binding protein 1 (53BP1) is involved in DNA damage-signaling pathways. J Cell Biol 153: 613–620.

20. VialardJE, GilbertCS, GreenCM, LowndesNF (1998) The budding yeast Rad9 checkpoint protein is subjected to Mec1/Tel1-dependent hyperphosphorylation and interacts with Rad53 after DNA damage. Embo J 17: 5679–5688.

21. XiaZ, MoralesJC, DunphyWG, CarpenterPB (2001) Negative cell cycle regulation and DNA damage-inducible phosphorylation of the BRCT protein 53BP1. J Biol Chem 276: 2708–2718.

22. XuX, SternDF (2003) NFBD1/KIAA0170 is a chromatin-associated protein involved in DNA damage signaling pathways. J Biol Chem 278: 8795–8803.

23. UsuiT, FosterSS, PetriniJH (2009) Maintenance of the DNA-damage checkpoint requires DNA-damage-induced mediator protein oligomerization. Mol Cell 33: 147–159.

24. FinnK, LowndesNF, GrenonM (2012) Eukaryotic DNA damage checkpoint activation in response to double-strand breaks. Cell Mol Life Sci 69: 1447–1473.

25. GilbertCS, Bosch MvM, GreenCM, VialardJE, GrenonM, et al. (2003) The budding yeast Rad9 checkpoint complex: chaperone proteins are required for its function. EMBO Rep 4: 953–958.

26. GilbertCS, GreenCM, LowndesNF (2001) Budding yeast Rad9 is an ATP-dependent Rad53 activating machine. Mol Cell 8: 129–136.

27. PellicioliA, FoianiM (2005) Signal transduction: how rad53 kinase is activated. Curr Biol 15: R769–771.

28. GotoH, KariyaR, ShimamotoM, KudoE, TauraM, et al. (2012) Antitumor effect of berberine against primary effusion lymphoma via inhibition of NF-kappaB pathway. Cancer Sci 103: 775–781.

29. Tapia-AlvealC, CalongeTM, O'ConnellMJ (2009) Regulation of chk1. Cell Div 4: 8.

30. KasaharaK, GotoH, EnomotoM, TomonoY, KiyonoT, et al. (2010) 14-3-3gamma mediates Cdc25A proteolysis to block premature mitotic entry after DNA damage. EMBO J 29: 2802–2812.

31. ChenY, CaldwellJM, PereiraE, BakerRW, SanchezY (2009) ATRMec1 phosphorylation-independent activation of Chk1 in vivo. J Biol Chem 284: 182–190.

32. SmitsVA, WarmerdamDO, MartinY, FreireR (2010) Mechanisms of ATR-mediated checkpoint signalling. Front Biosci 15: 840–853.

33. ChenY, SanchezY (2004) Chk1 in the DNA damage response: conserved roles from yeasts to mammals. DNA Repair (Amst) 3: 1025–1032.

34. TanakaK (2010) Multiple functions of the S-phase checkpoint mediator. Biosci Biotechnol Biochem 74: 2367–2373.

35. BlankleyRT, LydallD (2004) A domain of Rad9 specifically required for activation of Chk1 in budding yeast. J Cell Sci 117: 601–608.

36. EsashiF, MochidaS, MatsusakaT, ObaraT, OgawaA, et al. (2000) Establishment of and recovery from damage checkpoint requires sequential interactions of Crb2 with protein kinases Rad3, Chk1, and Cdc2. Cold Spring Harb Symp Quant Biol 65: 443–449.

37. WohlboldL, FisherRP (2009) Behind the wheel and under the hood: functions of cyclin-dependent kinases in response to DNA damage. DNA Repair (Amst) 8: 1018–1024.

38. EsashiF, YanagidaM (1999) Cdc2 phosphorylation of Crb2 is required for reestablishing cell cycle progression after the damage checkpoint. Mol Cell 4: 167–174.

39. JullienD, VagnarelliP, EarnshawWC, AdachiY (2002) Kinetochore localisation of the DNA damage response component 53BP1 during mitosis. J Cell Sci 115: 71–79.

40. RuffnerH, JiangW, CraigAG, HunterT, VermaIM (1999) BRCA1 is phosphorylated at serine 1497 in vivo at a cyclin-dependent kinase 2 phosphorylation site. Mol Cell Biol 19: 4843–4854.

41. RuffnerH, VermaIM (1997) BRCA1 is a cell cycle-regulated nuclear phosphoprotein. Proc Natl Acad Sci U S A 94: 7138–7143.

42. MosesAM, HericheJK, DurbinR (2007) Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase. Genome Biol 8: R23.

43. UbersaxJA, WoodburyEL, QuangPN, ParazM, BlethrowJD, et al. (2003) Targets of the cyclin-dependent kinase Cdk1. Nature 425: 859–864.

44. LoogM, MorganDO (2005) Cyclin specificity in the phosphorylation of cyclin-dependent kinase substrates. Nature 434: 104–108.

45. AlbuquerqueCP, SmolkaMB, PayneSH, BafnaV, EngJ, et al. (2008) A multidimensional chromatography technology for in-depth phosphoproteome analysis. Mol Cell Proteomics 7: 1389–1396.

46. HoltLJ, TuchBB, VillenJ, JohnsonAD, GygiSP, et al. (2009) Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution. Science 325: 1682–1686.

47. SmolkaMB, AlbuquerqueCP, ChenSH, SchmidtKH, WeiXX, et al. (2005) Dynamic changes in protein-protein interaction and protein phosphorylation probed with amine-reactive isotope tag. Mol Cell Proteomics 4: 1358–1369.

48. GrenonM, GilbertC, LowndesNF (2001) Checkpoint activation in response to double-strand breaks requires the Mre11/Rad50/Xrs2 complex. Nat Cell Biol 3: 844–847.

49. EnserinkJM, KolodnerRD (2010) An overview of Cdk1-controlled targets and processes. Cell Div 5: 11.

50. BishopAC, UbersaxJA, PetschDT, MatheosDP, GrayNS, et al. (2000) A chemical switch for inhibitor-sensitive alleles of any protein kinase. Nature 407: 395–401.

51. LiangC, StillmanB (1997) Persistent initiation of DNA replication and chromatin-bound MCM proteins during the cell cycle in cdc6 mutants. Genes Dev 11: 3375–3386.

52. NashP, TangX, OrlickyS, ChenQ, GertlerFB, et al. (2001) Multisite phosphorylation of a CDK inhibitor sets a threshold for the onset of DNA replication. Nature 414: 514–521.

53. PiattiS, BohmT, CockerJH, DiffleyJF, NasmythK (1996) Activation of S-phase-promoting CDKs in late G1 defines a “point of no return” after which Cdc6 synthesis cannot promote DNA replication in yeast. Genes Dev 10: 1516–1531.

54. SchwobE, BohmT, MendenhallMD, NasmythK (1994) The B-type cyclin kinase inhibitor p40SIC1 controls the G1 to S transition in S. cerevisiae. Cell 79: 233–244.

55. KoivomagiM, ValkE, VentaR, IofikA, LepikuM, et al. (2011) Dynamics of Cdk1 substrate specificity during the cell cycle. Mol Cell 42: 610–623.

56. KaocharS, ShanksL, WeinertT (2010) Checkpoint genes and Exo1 regulate nearby inverted repeat fusions that form dicentric chromosomes in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 107: 21605–21610.

57. SanchezY, BachantJ, WangH, HuF, LiuD, et al. (1999) Control of the DNA damage checkpoint by chk1 and rad53 protein kinases through distinct mechanisms. Science 286: 1166–1171.

58. GranataM, LazzaroF, NovarinaD, PanigadaD, PudduF, et al. (2010) Dynamics of Rad9 Chromatin Binding and Checkpoint Function Are Mediated by Its Dimerization and Are Cell Cycle-Regulated by CDK1 Activity. PLoS Genet 6: e1001047 doi:10.1371/journal.pgen.1001047.

59. Navadgi-PatilVM, BurgersPM (2009) A tale of two tails: activation of DNA damage checkpoint kinase Mec1/ATR by the 9-1-1 clamp and by Dpb11/TopBP1. DNA Repair (Amst) 8: 996–1003.

60. PudduF, GranataM, Di NolaL, BalestriniA, PiergiovanniG, et al. (2008) Phosphorylation of the budding yeast 9-1-1 complex is required for Dpb11 function in the full activation of the UV-induced DNA damage checkpoint. Mol Cell Biol 28: 4782–4793.

61. GardnerR, PutnamCW, WeinertT (1999) RAD53, DUN1 and PDS1 define two parallel G2/M checkpoint pathways in budding yeast. Embo J 18: 3173–3185.

62. IraG, PellicioliA, BalijjaA, WangX, FioraniS, et al. (2004) DNA end resection, homologous recombination and DNA damage checkpoint activation require CDK1. Nature 431: 1011–1017.

63. van VugtMA, GardinoAK, LindingR, OstheimerGJ, ReinhardtHC, et al. (2010) A mitotic phosphorylation feedback network connects Cdk1, Plk1, 53BP1, and Chk2 to inactivate the G(2)/M DNA damage checkpoint. PLoS Biol 8: e1000287 doi:10.1371/journal.pbio.1000287.

64. HuertasP, Cortes-LedesmaF, SartoriAA, AguileraA, JacksonSP (2008) CDK targets Sae2 to control DNA-end resection and homologous recombination. Nature 455: 689–692.

65. LimboO, ChahwanC, YamadaY, de BruinRA, WittenbergC, et al. (2007) Ctp1 is a cell-cycle-regulated protein that functions with Mre11 complex to control double-strand break repair by homologous recombination. Mol Cell 28: 134–146.

66. LazzaroF, SapountziV, GranataM, PellicioliA, VazeM, et al. (2008) Histone methyltransferase Dot1 and Rad9 inhibit single-stranded DNA accumulation at DSBs and uncapped telomeres. Embo J 27: 1502–1512.

67. GrenonM, CostelloeT, JimenoS, O'ShaughnessyA, FitzgeraldJ, et al. (2007) Docking onto chromatin via the Saccharomyces cerevisiae Rad9 Tudor domain. Yeast 24: 105–119.

68. SmitsVA (2006) Spreading the signal: dissociation of Chk1 from chromatin. Cell Cycle 5: 1039–1043.

69. HammetA, MagillC, HeierhorstJ, JacksonSP (2007) Rad9 BRCT domain interaction with phosphorylated H2AX regulates the G1 checkpoint in budding yeast. EMBO Rep 8: 851–857.

70. PfanderB, DiffleyJF (2011) Dpb11 coordinates Mec1 kinase activation with cell cycle-regulated Rad9 recruitment. EMBO J 30: 4897–4907.

71. QuM, YangB, TaoL, YatesJR3rd, RussellP, et al. (2012) Phosphorylation-dependent interactions between Crb2 and Chk1 are essential for DNA damage checkpoint. PLoS Genet 8: e1002817 doi:10.1371/journal.pgen.1002817.

72. MengZ, CapalboL, GloverDM, DunphyWG (2011) Role for casein kinase 1 in the phosphorylation of Claspin on critical residues necessary for the activation of Chk1. Mol Biol Cell 22: 2834–2847.

73. KielyPA, BaillieGS, BarrettR, BuckleyDA, AdamsDR, et al. (2009) Phosphorylation of RACK1 on tyrosine 52 by c-Abl is required for insulin-like growth factor I-mediated regulation of focal adhesion kinase. J Biol Chem 284: 20263–20274.

74. CockerJH, PiattiS, SantocanaleC, NasmythK, DiffleyJF (1996) An essential role for the Cdc6 protein in forming the pre-replicative complexes of budding yeast. Nature 379: 180–182.

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