Epigenetic Epidemiology of Common Complex Disease: Prospects for Prediction, Prevention, and Treatment

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Vyšlo v časopise: Epigenetic Epidemiology of Common Complex Disease: Prospects for Prediction, Prevention, and Treatment. PLoS Med 7(10): e32767. doi:10.1371/journal.pmed.1000356
Kategorie: Research in Translation
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pmed.1000356

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1. FeeroWG

GuttmacherAE

CollinsFS

2010 Genomic medicine–An updated primer. New Engl J Med 362 2001 2011

2. BirdA

2007 Perceptions of epigenetics. Nature 447 396 398

3. VaissiereT

SawanC

HercegZ

2008 Epigenetic interplay between histone modifications and DNA methylation in gene silencing. Mutat Res 659 40 48

4. ListerR

PelizzolaM

DowenRH

HawkinsRD

HonG

2009 Human DNA methylaomes at base pair resolution show widespread epigenomic differences. Nature 462 315 322

5. ByunHM

SiegmundKD

PanF

WeisenbergerDJ

KanelG

2009 Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns. Hum Mol Genet 18 4808 4817

6. AguileraO

FernandezAF

MunozA

FragaMF

2010 Epigenetics and environment: a complex relationship. J Appl Physiol Apr 8 [Epub ahead of print]

7. MeaneyMJ

2010 Epigenetics and the biological definition of gene x environment interactions. Child Dev 81 41 79

8. NichollsRD

2000 The impact of genomic imprinting for neurobehavioural and developmental disorders. J Clin Invest 105 413 418

9. SharmaS

KellyTK

JonesPA

2010 Epigenetics in cancer. Carcinogenesis 31 27 36

10. LairdPW

2003 The power and the promise of DNA methylation markers. Nat Rev Cancer 3 253 266

11. PiekarzRL

BatesSE

2009 Epigenetic modifiers: Basic understanding and clinical development. Clin Cancer Res 15 3918 3926

12. BeckS

RakyanVK

2008 The methylome: approaches for global DNA methylation profiling. Trends Genet 24 231 237

13. JenuweinT

AllisCD

2001 Translating the histone code. Science 293 1074 1080

14. FeinbergAP

2009 Genome-scale approaches to the epigenetics of common human disease. Virchows Arch 456 13 21

15. CampionJ

MilagroFI

MartinezJA

2009 Individuality and epigenetics in obesity. Obes Rev 10 383 392

16. TollefsbolTO

TollefsbolTO

2004 Methods of epigenetic analysis. Epigenetics protocols Secaucus (New Jersey) Springer Science & Business Media 1 8

17. ThompsonRF

AtzmonG

GheorgheC

LiangHQ

LowesC

2010 Tissue specific dysregulation of DNA methylation in aging. Aging Cell May 22 [Epub ahead of print]

18. TalensRP

BoomsaDI

TobiEW

KremerD

JukemaJW

2010 Variation, patterns and temporal stability of DNA methylation: considerations for epigenetic epidemiology. FASEB J 9 3135 3144

19. KimJK

SamaranayakeM

PradhanS

2009 Epigenetic mechanisms in mammals. Cell Mol Life Sci 66 596 612

20. ReikW

DeanW

WalterJ

2001 Epigenetic reprogramming in mammalian development. Science 293 1089 1093

21. BollatiV

BaccarelliA

2010 Environmental epigenetics. Heredity 105 105 112

22. HeijmansBT

TobiEW

SteinAD

PutterH

BlauwGJ

2008 Persistent epigenetic differences associated with prenatal exposure to famine in humans. Proc Natl Acad Sci U S A 105 17046 17049

23. TobiEW

LumeyLH

TalensRP

KremerD

PutterH

2009 DNA methylation differences after exposure to prenatal famine are common and timing- and sex-specific. Hum Mol Genet 18 4046 4053

24. HaigD

2007 Weismann rules! OK? Epigenetics and the Lamarckian temptation. Biol Philos 22 415 428

25. BoksMP

DerksEM

WeisenbergerBJ

StrengmanE

JansonE

2009 The relationship of DNA methylation with age, gender and genotype in twins and healthy controls. PLoS ONE 4 e6767 doi:10.1371/journal.pone.0006767

26. CalvaneseV

LaraE

KahnA

FragaMF

2009 The role of epigenetics in ageing and age-related diseases. Ageing Res Rev 8 268 276

27. FergusonLR

2009 Epigenetic variation and customising nutritional intervention. Curr Pharmacogenomics Person Med 7 115 124

28. KimKC

FrisoS

ChoiSW

2009 DNA methylation, an epigenetic mechanism connecting folate to healthy embryonic development and aging. J Nutr Biochem 20 917 926

29. WaterlandRA

2006 Assessing the effects of high methionine intake on DNA methylation. J Nutr 136 6 Suppl 1706S 1710S

30. WidikerS

KarstS

WagenerA

BrockmanGA

2010 High fat diet leads to a decreased methylation of the Mc4r gene in the obese BFMI and the lean B6 mouse lines. J Appl Genet 51 193 197

31. DelageB

DashwoodRH

2008 Dietary manipulation of histone structure and function. Annu Rev Nutr 28 347 366

32. MyzakMC

DashwoodRH

2006 Histone deacetylases as targets for dietary cancer preventive agents: lessons learned with butyrate, diallyl disulfide and sulforaphane. Curr Drug Targets 7 443 452

33. DrummondMJ

GlynnEL

FryCS

DhananiS

VolpiE

2009 Essential amino acids increase miRNA-499, -208b and -23 in human skeletal muscle. J Nutr 139 2279 2284

34. HsiungDT

MarsitCJ

HousemanEA

EddyK

FurnissCS

2007 Global DNA methylation level in whole blood as a biomarker in head and neck squamous cell carcinoma. Cancer Epidemiol Biomarkers Prev 16 108 114

35. KaurJ

DemokanS

TripathiSC

MachaMA

BegumS

2010 Promoter hypermethylation in indian primary oral squamous cell carcinoma. Int J Cancer E-pub ahead of print. 5 April 2010. doi:10.1002/ijc.25377

36. PhilipsJM

GoodmanJI

2009 Inhalation of cigarette smoke induces regions of altered DNA methylation (RAMs) in SENCAR mouse lung. Toxicology 260 7 15

37. LaunayJM

Del PinoM

ChironiG

CallebertJ

Peoc'hK

2009 Smoking induces long-lasting effects through a monoamine-oxidase epigenetic regulation. PLoS ONE 4 e7959 doi:10.1371/journal.pone.0007959

38. LiuH

ZhouY

BoggsSE

BelinskySA

LiuJ

2007 Cigarette smoke induces demethylation of prometastatic oncogene synuclein-gamme in lung cancer cells by downregulation of DNMT3B. Oncogene 26 5900 5910

39. HussainM

RaoM

HumphriesAE

HongJA

LiuF

2009 Tobacco smoke induces polycomb-mediated repression of Dickkopf-1 in lung cancer cells. Cancer Res 69 3570 3578

40. SchembriF

SridharS

PerdomoC

GustafsonAM

ZhangX

2009 MicroRNAs as modulators of smoking-induced gene expression changes I human airway epithelium. Proc Natl Acad Sci U S A 106 2319 2324

41. IzzottiA

LargheroP

CartigliaC

LongobardiM

PfefferU

2010 Modulation of microRNA expression by budesonide, phenethyl isothiocyanate and cigarette smoke in mouse liver and lung. Carcinogenesis 31 894 901

42. Guerrero-PrestonR

GoldmanLR

Brebi-MievilleP

Ili-GangaC

LebronC

2010 Global hypomethylation is associated with in utero exposure to cotinine and perfluorinated alkyl compounds. Epigenetics Aug 14 [Epub haead of print]

43. BretonCV

ByunHM

WentenM

PanF

YangA

2009 Prenatal tobacco smoke exposure affects global and gene-specific DNA methylation. Am J Respir Crit Care Med 180 462 467

44. SauerJ

JangH

ZimmerlyEM

KimKC

2010 Agening, chronic alcohol consumption and folate are determinnats of genomic DNAmethylation, p16 promoter methylation and the expression of p16 in the mouse colon. Br J Nutr 104 24 30

45. SeitzHK

StickelF

2007 Molecular mechanisms of alcohol-mediated carcinogenesis. Nat Rev Cancer 7 599 612

46. PascualM

BoixJ

FelipoV

GuerriC

2009 Repeated alcohol administration during adolescence causes changes in the mesolimbic dopaminergic and glutamatergic systems and promotes alcohol intake in the adult rat. J Neurochem 108 920 31

47. MirandaRC

PietrzykowskiAZ

TangY

SathyanP

MayfieldD

2010 MicroRNAs: master regulators of ethanol abuse and toxicity? Alcohol Clin Exp Res 34 575 87

48. TarantiniL

BonziniM

ApostoliP

PegoraroV

BollatiV

2009 Effects of particulate matter on genomic DNA methylation content and iNOS promter methylation. Environ Health Perspect 117 217 222

49. BollatiV

BaccarelliA

HouL

BonziniM

FustinoniS

2007 Changes in DNA methylation patterns in subjects exposed to low-dose benzene. Cancer Res 67 876 880

50. BaccarelliA

WrightRO

BollatiV

TarantiniL

LitonjuaAA

2009 Rapid DNA methylation changes after exposure to traffic particles. Am J Respir Crit Care Med 179 572 578

51. WilkerEH

BaccarelliA

SuhH

VokonasP

WrightRO

2010 Black carbon exposures, blood pressure and interactions with single nucleotide polymorphisms in microRNA processing genes. Environ Health Perspect 118 943 948

52. ShinCM

KimN

JungY

ParkJH

KangGH

2010 The role of Helicobacter pylori infection in aberrant DNA methylation along multistep gastric carcinogenesis. Cancer Sci E-pub ahead of print. 18 February 2010. doi:10.1111/j.1349-7006.2010.01535.x

53. TsaiCN

TsaiCL

TseKP

ChangHY

ChangYS

2002 The Epstein-Barr virus oncogene product, latent membrane protein 1, induces the downregulation of E-cadherin gene expression via activation of DNA methyltransferases. Proc Natl Acad Sci U S A 99 10084 10089

54. BackdahlL

BushellA

BeckS

2009 Inflammatory signalling as mediator of epigenetic modulation in tissue-specific chronic inflammation. Int J Biochem Cell Biol 41 176 84

55. MedzhitovR

HorngT

2009 Transcriptional control of the inflammatory response. Nature Rev Immunol 9 692 703

56. WeaverIC

CervoniN

ChampagneFA

D'AlessioAC

SharmaS

2004 Epigenetic programming by maternal behaviour. Nat Neurosci 7 847 854

57. McGeeSL

FairleeE

GrahamAP

HargreavesM

2009 Exercise-induced histone modifications in human skeletal muscle. J Physiol 587 5951 5981

58. Radom AizikS

ZaldivarFPJr

OliverSR

GalassettiPR

CooperDM

2010 Evidence for microRNA involvement in exercise-associated neutrophil gene expression changes. J Appl Physiol 109 252 261

59. KadotaM

YangHH

HuN

WangC

HuY

2007 Allele-specific chromatin immunoprecipitation studies show genetic influence on chromatin state in human genome. PLoS Genet 3 e81 doi:10.1371/journal.pgen.0030081

60. WongCC

CaspiA

WilliamsB

CraigIW

HoutsR

2010 A longitudinal study of epigenetic variation in twins. Epigenetics 5 516 526

61. BjornssonHT

SigurdssonMI

FallinMD

IrizarryRA

AspelundT

2008 Intra-individual change over time in DNA methylation with familial clustering. JAMA 299 2877 2883

62. FrenchHJ

AttenboroughR

HardyK

ShannonF

WilliamsRBH

2009 Interindividual variation in epigenomic phenomena in humans. Mamm Genome 20 604 611

63. HeijmansBT

KremerD

TobiEW

BoomsaDI

SlagboomPE

2007 Heritable rather than age-related and stochastic factors dominate variation in DNA methylation of the human IGF2/H19 locus. Hum Mol Genet 16 547 554

64. ZhangD

ChengL

BadnerJA

ChenC

ChenQ

2010 Genetic control of individual differences in gene-specific methylation in human brain. Am J Hum Genet 86 411 419

65. DimasAS

DermitzakisET

2009 Genetic variation of regulatory systems. Curr Opin Genet Dev 19 586 590

66. KongA

SteinthorsdottirV

MassonG

ThorleifssonG

SulemP

2009 Parental origin of sequence variants associated with complex diseases. Nature 462 868 874

67. Davey SmithG

LawlorDA

HarbordR

TimpsonN

DayI

2007 Clustered environments and randomized genes: a fundamental distinction between conventional and genetic epidemiology. PLoS Med 4 e352 doi:10.1371/journal.pmed.0040352

68. Davey SmithG

EbrahimS

2003 ‘Mendelian randomization’: can genetic epidemiology contribute to understanding environmental determinants of disease? Int J Epidemiol 32 1 22

69. Davey SmithG

2010 Mendelian randomization for strengthening causal inference in observational studies: applications to gene by environment interaction. Perspect Psychol Sci In press

70. SheehanNA

DidelezV

BurtonPR

TobinMD

2008 Mendelian randomization and causal inference in observational epidemiology. PLoS Med 5 e177 doi:10.1371/journal.pmed.0050177

71. LewisSJ

Davey SmithG

2005 Alcohol, ALDH2 and esophageal cancer: a meta-analysis which illustrates the potentials and limitations of a Mendelian randomization approach. Cancer Epidemiol Biomarkers Prev 14 1967 1971

72. BocciaS

HashibeM

GalliP

De FeoE

AsakageT

2009 Aldehyde dehydrogenase 2 and head and neck cancer: a meta-analysis implementing a Mendelian randomization approach. Cancer Epidemiol Biomarkers Prev 18 248 254

73. ChenL

Davey SmithG

HarbordR

LewisS

2008 Alcohol intake and blood pressure: a systematic review implementing Mendelian randomization approach. PLoS Med 5 e52 doi:10.1371/journal.pmed.0050052

74. Linsel-NitschkeP

GotzA

ErdmannJ

BraenneI

BraundP

2008 Lifelong reduction of LDL-cholesterol related to a common variant in the LDL-receptor gene decreases the risk of coronary artery disease–a Mendelian randomization study. PLoS ONE 3 e2986 doi:10.1371/journal.pone.0002986

75. TeslovichM

MusunumuK

SmithAV

EdmondsonAC

StylianouIM

2010 Biological, clinical and population relevance of 95 loci for blood lipids. Nature 466 707 713

76. SchuldinerAR

PollinTI

2010 Variation in blood lipids. Nature 466 703 704

77. FreathyRM

TimpsonNJ

LawlorDA