Experimental Evolution of Pathogenesis: “Patient” Research

article has not abstract

Vyšlo v časopise: Experimental Evolution of Pathogenesis: “Patient” Research. PLoS Pathog 9(5): e32767. doi:10.1371/journal.ppat.1003340
Kategorie: Pearls
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.ppat.1003340

Souhrn

article has not abstract

Zdroje

1. LenskiRE, TravisanoM (1994) Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populations. Proc Natl Acad Sci U S A 91: 6808–6814.

2. HymanED (1988) A new method of sequencing DNA. Anal Biochem 174: 423–436.

3. Wetterstrand K. DNA sequencing costs: data from the NHGRI Genome Sequencing Program (GSP). Available: http://www.genome.gov/sequencingcosts/. Accessed 29 April 2013.

4. KaweckiTJ, LenskiRE, EbertD, HollisB, OlivieriI, et al. (2012) Experimental evolution. Trends Ecol Evol 27: 547–560.

5. SabinAB, SchlesingerRW (1945) Production of immunity to dengue with virus modified by propagation in mice. Science 101: 640–642.

6. EbertD (1998) Experimental evolution of parasites. Science 282: 1432–1435.

7. KassenR (2002) The experimental evolution of specialists, generalists, and the maintenance of diversity. J Evol Biol 15: 173–190.

8. CooperVS, LenskiRE (2000) The population genetics of ecological specialization in evolving Escherichia coli populations. Nature 407: 736–739.

9. EnsmingerAW, YassinY, MironA, IsbergRR (2012) Experimental evolution of Legionella pneumophila in mouse macrophages leads to strains with altered determinants of environmental survival. PLoS Pathog 8: e1002731 doi:10.1371/journal.ppat.1002731

10. FieldsBS (1996) The molecular ecology of legionellae. Trends Microbiol 4: 286–290.

11. CiotaAT, KramerLD (2010) Insights into arbovirus evolution and adaptation from experimental studies. Viruses 2: 2594–2617.

12. DeardorffER, FitzpatrickKA, JerzakGVS, ShiP-Y, KramerLD, et al. (2011) West Nile virus experimental evolution in vivo and the trade-off hypothesis. PLoS Pathog 7: e1002335 doi:10.1371/journal.ppat.1002335

13. HerfstS, SchrauwenEJ, LinsterM, ChutinimitkulS, de WitE, et al. (2012) Airborne transmission of influenza A/H5N1 virus between ferrets. Science 336: 1534–1541.

14. ImaiM, WatanabeT, HattaM, DasSC, OzawaM, et al. (2012) Experimental adaptation of an influenza H5 HA confers respiratory droplet transmission to a reassortant H5 HA/H1N1 virus in ferrets. Nature 486: 420–428.

15. EbertD, BullJJ (2003) Challenging the trade-off model for the evolution of virulence: is virulence management feasible? Trends Microbiol 11: 15–20.

16. PandyaU, SinhaM, LuxonBA, WatsonDA, NieselDW (2009) Global transcription profiling and virulence potential of Streptococcus pneumoniae after serial passage. Gene 443: 22–31.

17. TraverseCC, Mayo-SmithLM, PoltakSR, CooperVS (2013) Tangled bank of experimentally evolved Burkholderia biofilms reflects selection during chronic infections. Proc Natl Acad Sci U S A 110: E250–259.

18. AlmahmoudI, KayE, SchneiderD, MaurinM (2009) Mutational paths towards increased fluoroquinolone resistance in Legionella pneumophila. J Antimicrob Chemother 64: 284–293.

19. AndersonJB, SirjusinghC, ParsonsAB, BooneC, WickensC, et al. (2003) Mode of selection and experimental evolution of antifungal drug resistance in Saccharomyces cerevisiae. Genetics 163: 1287–1298.

20. WongA, RodrigueN, KassenR (2012) Genomics of adaptation during experimental evolution of the opportunistic pathogen Pseudomonas aeruginosa. PLoS Genet 8: e1002928 doi:10.1371/journal.pgen.1002928

21. LiebermanTD, MichelJB, AingaranM, Potter-BynoeG, RouxD, et al. (2011) Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes. Nat Genet 43: 1275–1280.

22. YangL, JelsbakL, MarvigRL, DamkiaerS, WorkmanCT, et al. (2011) Evolutionary dynamics of bacteria in a human host environment. Proc Natl Acad Sci U S A 108: 7481–7486.

23. ZdziarskiJ, BrzuszkiewiczE, WulltB, LiesegangH, BiranD, et al. (2010) Host imprints on bacterial genomes—rapid, divergent evolution in individual patients. PLoS Pathog 6: e1001078 doi:10.1371/journal.ppat.1001078

24. HerronMD, DoebeliM (2013) Parallel evolutionary dynamics of adaptive diversification in Escherichia coli. PLoS Biol 11: e1001490 doi:10.1371/journal.pbio.1001490

25. EldeNC, ChildSJ, EickbushMT, KitzmanJO, RogersKS, et al. (2012) Poxviruses deploy genomic accordions to adapt rapidly against host antiviral defenses. Cell 150: 831–841.

26. LeggettHC, BenmayorR, HodgsonDJ, BucklingA (2013) Experimental evolution of adaptive phenotypic plasticity in a parasite. Curr Biol 23: 139–142.