The Subtilisin-Like Protease AprV2 Is Required for Virulence and Uses a Novel Disulphide-Tethered Exosite to Bind Substrates
Many bacterial pathogens produce extracellular proteases that degrade the extracellular matrix of the host and therefore are involved in disease pathogenesis. Dichelobacter nodosus is the causative agent of ovine footrot, a highly contagious disease that is characterized by the separation of the hoof from the underlying tissue. D. nodosus secretes three subtilisin-like proteases whose analysis forms the basis of diagnostic tests that differentiate between virulent and benign strains and have been postulated to play a role in virulence. We have constructed protease mutants of D. nodosus; their analysis in a sheep virulence model revealed that one of these enzymes, AprV2, was required for virulence. These studies challenge the previous hypothesis that the elastase activity of AprV2 is important for disease progression, since aprV2 mutants were virulent when complemented with aprB2, which encodes a variant that has impaired elastase activity. We have determined the crystal structures of both AprV2 and AprB2 and characterized the biological activity of these enzymes. These data reveal that an unusual extended disulphide-tethered loop functions as an exosite, mediating effective enzyme-substrate interactions. The disulphide bond and Tyr92, which was located at the exposed end of the loop, were functionally important. Bioinformatic analyses suggested that other pathogenic bacteria may have proteases that utilize a similar mechanism. In conclusion, we have used an integrated multidisciplinary combination of bacterial genetics, whole animal virulence trials in the original host, biochemical studies, and comprehensive analysis of crystal structures to provide the first definitive evidence that the extracellular secreted proteases produced by D. nodosus are required for virulence and to elucidate the molecular mechanism by which these proteases bind to their natural substrates. We postulate that this exosite mechanism may be used by proteases produced by other bacterial pathogens of both humans and animals.
Vyšlo v časopise:
The Subtilisin-Like Protease AprV2 Is Required for Virulence and Uses a Novel Disulphide-Tethered Exosite to Bind Substrates. PLoS Pathog 6(11): e32767. doi:10.1371/journal.ppat.1001210
Kategorie:
Research Article
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.ppat.1001210
Souhrn
Many bacterial pathogens produce extracellular proteases that degrade the extracellular matrix of the host and therefore are involved in disease pathogenesis. Dichelobacter nodosus is the causative agent of ovine footrot, a highly contagious disease that is characterized by the separation of the hoof from the underlying tissue. D. nodosus secretes three subtilisin-like proteases whose analysis forms the basis of diagnostic tests that differentiate between virulent and benign strains and have been postulated to play a role in virulence. We have constructed protease mutants of D. nodosus; their analysis in a sheep virulence model revealed that one of these enzymes, AprV2, was required for virulence. These studies challenge the previous hypothesis that the elastase activity of AprV2 is important for disease progression, since aprV2 mutants were virulent when complemented with aprB2, which encodes a variant that has impaired elastase activity. We have determined the crystal structures of both AprV2 and AprB2 and characterized the biological activity of these enzymes. These data reveal that an unusual extended disulphide-tethered loop functions as an exosite, mediating effective enzyme-substrate interactions. The disulphide bond and Tyr92, which was located at the exposed end of the loop, were functionally important. Bioinformatic analyses suggested that other pathogenic bacteria may have proteases that utilize a similar mechanism. In conclusion, we have used an integrated multidisciplinary combination of bacterial genetics, whole animal virulence trials in the original host, biochemical studies, and comprehensive analysis of crystal structures to provide the first definitive evidence that the extracellular secreted proteases produced by D. nodosus are required for virulence and to elucidate the molecular mechanism by which these proteases bind to their natural substrates. We postulate that this exosite mechanism may be used by proteases produced by other bacterial pathogens of both humans and animals.
Zdroje
1. StewartDJ
1989 Footrot of sheep.
EgertonJR
YongWK
RiffkinGG
Footrot and foot abscess of ruminants Boca Raton CRC Press 5 45
2. GreenLE
GeorgeTR
2008 Assessment of current knowledge of footrot in sheep with particular reference to Dichelobacter nodosus and implications for elimination or control strategies for sheep in Great Britain. Vet J 175 173 180
3. WaniSA
SamantaI
2006 Current understanding of the aetiology and laboratory diagnosis of footrot. Vet J 171 421 428
4. EgertonJR
RobertsDS
ParsonsonIM
1969 The aetiology and pathogenesis of ovine footrot. I. A histological study of the bacterial invasion. J Comp Pathol 81 179 185
5. StewartDJ
ClarkBL
JarretRG
1984 Differences between strains of Bacteroides nodosus in their effects on the severity of footrot, bodyweight and wool growth on Merino sheep. Aust Vet J 61 349 352
6. KennanRM
DhungyelOP
WhittingtonRJ
EgertonJR
RoodJI
2001 The type IV fimbrial subunit gene (fimA) of Dichelobacter nodosus is essential for virulence, protease secretion, and natural competence. J Bacteriol 183 4451 4458
7. HanX
KennanRM
DaviesJK
ReddacliffLA
DhungyelOP
2008 Twitching motility is essential for virulence in Dichelobacter nodosus. J Bacteriol 190 3323 3335
8. KorttAA
RiffkinMC
FocaretaA
StewartDJ
1993 Amino acid sequence of extracellular acidic protease V5 of Dichelobacter nodosus, the causative organism of ovine footrot. Biochem Mol Biol Int 29 989 998
9. BillingtonSJ
JohnstonJL
RoodJI
1996 Virulence regions and virulence factors of the ovine footrot pathogen, Dichelobacter nodosus. FEMS Microbiol Lett 145 147 156
10. LilleyGG
StewartDJ
KorttAA
1992 Amino acid and DNA sequences of an extracellular basic protease of Dichelobacter nodosus show that it is a member of the subtilisin family of proteases. Eur J Biochem 210 13 21
11. RiffkinMC
FocaretaA
EdwardsRD
StewartDJ
KorttAA
1993 Cloning, sequence and expression of the gene (aprV5) encoding extracellular serine acidic protease V5 from Dichelobacter nodosus. Gene 137 259 264
12. RiffkinMC
WangLF
KorttAA
StewartDJ
1995 A single amino-acid change between the antigenically different extracellular serine proteases V2 and B2 from Dichelobacter nodosus. Gene 167 279 283
13. SiezenRJ
LeunissenJA
1997 Subtilases: the superfamily of subtilisin-like serine proteases. Protein Sci 6 501 523
14. StewartDJ
1979 The role of elastase in the differentiation of Bacteroides nodosus infections in sheep and cattle. Res Vet Sci 27 99 105
15. DepiazziLJ
HendersonJ
PenhaleWJ
1990 Measurement of protease thermostability, twitching motility and colony size of Bacteroides nodosus. Vet Microbiol 22 353 363
16. PalmerMA
1993 A gelatin test to detect activity and stability of proteases produced by Dichelobacter nodosus. Vet Microbiol 36 113 122
17. LilleyGG
RiffkinMC
StewartDJ
KorttAA
1995 Nucleotide and deduced protein sequence of the extracellular, serine basic protease gene (bprB) from Dichelobacter nodosus strain 305: comparison with the basic protease gene (bprV) from virulent strain 198. Biochem Mol Biol Int 36 101 111
18. KorttAA
StewartDJ
1994 Properties of the extracellular acidic proteases of Dichelobacter nodosus. Stability and specificity of peptide bond cleavage. Biochem Mol Biol Int 34 1167 1176
19. DepiazziLJ
RichardsRB
1979 A degrading proteinase test to distinguish benign and virulent ovine isolates of Bacteroides nodosus. Aust Vet J 55 25 28
20. LiuD
YongWK
1993 Use of elastase test, gelatin gel test and electrophoretic zymogram to determine virulence of Dichelobacter nodosus isolated from ovine foot rot. Res Vet Sci 55 124 129
21. LeeMA
LiuY
2000 Sequencing and characterization of a novel serine metalloprotease from Burkholderia pseudomallei. FEMS Microbiol Lett 192 67 72
22. ChinC-Y
OthmanR
NathanS
2007 The Burkholderia pseudomallei serine protease MprA is autoproteolytically activated to produce a highly stable enzyme. Enzyme Microb Technol 40 370 377
23. ValadeE
ThibaultFM
GauthierYP
PalenciaM
PopoffMY
2004 The PmlI-PmlR quorum-sensing system in Burkholderia pseudomallei plays a key role in virulence and modulates production of the MprA protease. J Bacteriol 186 2288 2294
24. YeohS
O'DonnellRA
KoussisK
DluzewskiAR
AnsellKH
2007 Subcellular discharge of a serine protease mediates release of invasive malaria parasites from host erythrocytes. Cell 131 1072 1083
25. MillerSA
ThathyV
AjiokaJW
BlackmanMJ
KimK
2003 TgSUB2 is a Toxoplasma gondii rhoptry organelle processing proteinase. Mol Microbiol 49 883 894
26. KennanRM
DhungyelOP
WhittingtonRJ
EgertonJR
RoodJI
2003 Transformation-mediated serogroup conversion of Dichelobacter nodosus. Vet Microbiol 92 169 178
27. KorttAA
BurnsJE
StewartDJ
1983 Detection of the extracellular proteases of Bacteroides nodosus in polyacrylamide gels: a rapid method of distinguishing virulent and benign ovine isolates. Res Vet Sci 35 171 174
28. EgertonJR
RobertsDS
1971 Vaccination against ovine foot-rot. J Comp Pathol 81 179 185
29. WhittingtonRJ
NichollsPJ
1995 Grading the lesions of ovine footrot. Res Vet Sci 58 26 34
30. OhmanDE
CryzSJ
IglewskiBH
1980 Isolation and characterization of Pseudomonas aeruginosa PAO mutant that produces altered elastase. J Bacteriol 142 836 842
31. BetsuyakuT
NishimuraM
YoshiokaA
TakeyabuK
MiyamotoK
1996 Elastin-derived peptides and neutrophil elastase in bronchoalveolar lavage fluid. Am J Respir Crit Care Med 154 720 724
32. WongW
KennanR
RosaldoCJ
RoodJI
WhisstockJ
2010 Crystallization of the virulent and benign subtilisin-like proteases from the ovine foot-rot pathogen, Dichelobacter nodosus. Acta Crystallogr F 66 289 293
33. PottertonE
BriggsP
TurkenburgM
DodsonE
2003 A graphical user interface to the CCP4 program suite. Acta Crystallogr D Biol Crystallogr 59 1131 1137
34. Collaborative Computational Project N 1994 The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 50 760 763
35. EmsleyP
CowtanK
2004 Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60 2126 2132
36. MurshudovGN
VaginAA
DodsonEJ
1997 Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D Biol Crystallogr 53 240 255
37. McCoyAJ
Grosse-KunstleveRW
StoroniLC
ReadRJ
2005 Likelihood-enhanced fast translation functions. Acta Crystallogr D Biol Crystallogr 61 458 464
38. SmithCA
ToogoodHS
BakerHM
DanielRM
BakerEN
1999 Calcium-mediated thermostability in the subtilisin superfamily: the crystal structure of Bacillus Ak.1 protease at 1.8 A resolution. J Mol Biol 294 1027 1040
39. JaroszewskiL
RychlewskiL
LiZ
LiW
GodzikA
2005 FFAS03: a server for profile--profile sequence alignments. Nucleic Acids Res 33 W284 288
40. CanutescuAA
ShelenkovAA
DunbrackRLJr
2003 A graph-theory algorithm for rapid protein side-chain prediction. Protein Sci 12 2001 2014
41. LangerG
CohenSX
LamzinVS
PerrakisA
2008 Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7. Nat Protoc 3 1171 1179
42. AfoninePV
Grosse-Kunstleve
AdamsRW
2005 The Phenix refinement framework. CCP4 Newsletter 42 Contribution 8
43. BrungerAT
KuriyanJ
KarplusM
1987 Crystallographic R Factor Refinement by Molecular Dynamics. Science 235 458 460
44. PainterJ
MerrittEA
2006 Optimal description of a protein structure in terms of multiple groups undergoing TLS motion. Acta Crystallogr D Biol Crystallogr 62 439 450
45. PerrakisA
SixmaTK
WilsonKS
LamzinVS
1997 wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models. Acta Crystallogr D Biol Crystallogr 53 448 455
46. LamzinVS
WilsonKS
1993 Automated refinement of protein models. Acta Crystallogr D Biol Crystallogr 49 129 147
47. DavisIW
Leaver-FayA
ChenVB
BlockJN
KapralGJ
2007 MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res 35 W375 383
48. AndroulakisS
SchmidbergerJ
BateMA
DeGoriR
BeitzA
2008 Federated repositories of X-ray diffraction images. Acta Crystallogr D Biol Crystallogr D64 810 814
49. LehrerSS
1971 Solute perturbation of protein fluorescence. The quenching of the tryptophyl fluorescence of model compounds and of lysozyme by iodide ion. Biochemistry 10 3254 3263
50. PottertonL
McNicholasS
KrissinelE
GruberJ
CowtanK
2004 Developments in the CCP4 molecular-graphics project. Acta Crystallogr D Biol Crystallogr 60 2288 2294
51. DeLanoWL
2002 The PyMOL User's Manual Scientific D, editor. San Carlos, CA, USA
52. KonagurthuAS
WhisstockJC
StuckeyPJ
LeskAMPS
2006 MUSTANG: A multiple structural alignment algorithim. Proteins: Structure, Function and Bioinformatics 64 559 574
53. FrishmanD
ArgosP
1995 Knowledge-based protein secondary structure assignment. Proteins 23 566 579
54. VieiraJ
MessingJ
1982 The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene 19 259 268
55. WangRF
KushnerSR
1991 Construction of versatile low-copy-number vectors for cloning, sequencing and gene expression in Escherichia coli. Gene 100 195 199
56. GallagherT
OliverJ
BottR
BetzelC
GillilandGL
1996 Subtilisin BPN' at 1.6 A resolution: analysis for discrete disorder and comparison of crystal forms. Acta Crystallogr 52 1125 1135
57. GouetP
CourcelleE
StuartDI
MetozF
1999 ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15 305 308
58. ThompsonJD
HigginsDG
GibsonTJ
1994 Clustal W: improving the sensitivity of progressive multiple sequence alignments through sequence weighing, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22 4673 4680
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Hygiena a epidemiológia Infekčné lekárstvo LaboratóriumČlánok vyšiel v časopise
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