#PAGE_PARAMS# #ADS_HEAD_SCRIPTS# #MICRODATA#

Structural Insights into a Unique Effector LidA Recognizing Both GDP and GTP Bound Rab1 in Their Active State


The intracellular pathogen Legionella pneumophila hijacks the endoplasmic reticulum (ER)-derived vesicles to create an organelle designated Legionella-containing vacuole (LCV) required for bacterial replication. Maturation of the LCV involved acquisition of Rab1, which is mediated by the bacterial effector protein SidM/DrrA. SidM/DrrA is a bifunctional enzyme having the activity of both Rab1-specific GDP dissociation inhibitor (GDI) displacement factor (GDF) and guanine nucleotide exchange factor (GEF). LidA, another Rab1-interacting bacterial effector protein, was reported to promote SidM/DrrA-mediated recruitment of Rab1 to the LCV as well. Here we report the crystal structures of LidA complexes with GDP- and GTP-bound Rab1 respectively. Structural comparison revealed that GDP-Rab1 bound by LidA exhibits an active and nearly identical conformation with that of GTP-Rab1, suggesting that LidA can disrupt the switch function of Rab1 and render it persistently active. As with GTP, LidA maintains GDP-Rab1 in the active conformation through interaction with its two conserved switch regions. Consistent with the structural observations, biochemical assays showed that LidA binds to GDP- and GTP-Rab1 equally well with an affinity approximately 7.5 nM. We propose that the tight interaction with Rab1 allows LidA to facilitate SidM/DrrA-catalyzed release of Rab1 from GDIs. Taken together, our results support a unique mechanism by which a bacterial effector protein regulates Rab1 recycling.


Vyšlo v časopise: Structural Insights into a Unique Effector LidA Recognizing Both GDP and GTP Bound Rab1 in Their Active State. PLoS Pathog 8(3): e32767. doi:10.1371/journal.ppat.1002528
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.ppat.1002528

Souhrn

The intracellular pathogen Legionella pneumophila hijacks the endoplasmic reticulum (ER)-derived vesicles to create an organelle designated Legionella-containing vacuole (LCV) required for bacterial replication. Maturation of the LCV involved acquisition of Rab1, which is mediated by the bacterial effector protein SidM/DrrA. SidM/DrrA is a bifunctional enzyme having the activity of both Rab1-specific GDP dissociation inhibitor (GDI) displacement factor (GDF) and guanine nucleotide exchange factor (GEF). LidA, another Rab1-interacting bacterial effector protein, was reported to promote SidM/DrrA-mediated recruitment of Rab1 to the LCV as well. Here we report the crystal structures of LidA complexes with GDP- and GTP-bound Rab1 respectively. Structural comparison revealed that GDP-Rab1 bound by LidA exhibits an active and nearly identical conformation with that of GTP-Rab1, suggesting that LidA can disrupt the switch function of Rab1 and render it persistently active. As with GTP, LidA maintains GDP-Rab1 in the active conformation through interaction with its two conserved switch regions. Consistent with the structural observations, biochemical assays showed that LidA binds to GDP- and GTP-Rab1 equally well with an affinity approximately 7.5 nM. We propose that the tight interaction with Rab1 allows LidA to facilitate SidM/DrrA-catalyzed release of Rab1 from GDIs. Taken together, our results support a unique mechanism by which a bacterial effector protein regulates Rab1 recycling.


Zdroje

1. ZerialMMcBrideH 2001 Rab proteins as membrane organizers. Nat Rev Mol Cell Biol 2 107 117

2. PfefferSR 2001 Rab GTPases: specifying and deciphering organelle identity and function. Trends Cell Biol 11 487 491

3. SegevN 2001 Ypt and Rab GTPases: insight into functions through novel interactions. Curr Opin Cell Biol 13 500 511

4. SeabraMCWasmeierC 2004 Controlling the location and activation of Rab GTPases. Curr Opin Cell Biol 16 451 457

5. UllrichOStenmarkHAlexandrovKHuberLAKaibuchiK 1993 Rab GDP dissociation inhibitor as a general regulator for the membrane association of rab proteins. J Biol Chem 268 18143 18150

6. UllrichOHoriuchiHBucciCZerialM 1994 Membrane association of Rab5 mediated by GDP-dissociation inhibitor and accompanied by GDP/GTP exchange. Nature 368 157 160

7. PfefferSRDirac-SvejstrupABSoldatiT 1995 Rab GDP dissociation inhibitor: putting rab GTPases in the right place. J Biol Chem 270 17057 17059

8. Dirac-SvejstrupABSumizawaTPfefferSR 1997 Identification of a GDI displacement factor that releases endosomal Rab GTPases from Rab-GDI. EMBO J 16 465 472

9. Pereira-LealJBHumeANSeabraMC 2001 Prenylation of Rab GTPases: molecular mechanisms and involvement in genetic disease. FEBS Lett 498 197 200

10. CaleroMChenCZZhuWWinandNHavasKA 2003 Dual prenylation is required for Rab protein localization and function. Mol Biol Cell 14 1852 1867

11. GomesAQAliBRRamalhoJSGodfreyRFBarralDC 2003 Membrane targeting of Rab GTPases is influenced by the prenylation motif. Mol Biol Cell 14 1882 1899

12. SiniossoglouSPeak-ChewSYPelhamHR 2000 Ric1p and Rgp1p form a complex that catalyses nucleotide exchange on Ypt6p. EMBO J 19 4885 4894

13. RossmanKLDerCJSondekJ 2005 GEF means go: turning on RHO GTPases with guanine nucleotide-exchange factors. Nat Rev Mol Cell Biol 6 167 180

14. BosJLRehmannHWittinghoferA 2007 GEFs and GAPs: critical elements in the control of small G proteins. Cell 129 865 877

15. BarrFLambrightDG 2010 Rab GEFs and GAPs. Curr Opin Cell Biol 22 461 470

16. McLauchlanHNewellJMorriceNOsborneAWestM 1998 A novel role for Rab5-GDI in ligand sequestration into clathrin-coated pits. Curr Biol 8 34 45

17. KoumandouVLDacksJBCoulsonRMFieldMC 2007 Control systems for membrane fusion in the ancestral eukaryote; evolution of tethering complexes and SM proteins. BMC Evol Biol 7 29

18. BatokoHZhengHQHawesCMooreI 2000 A rab1 GTPase is required for transport between the endoplasmic reticulum and golgi apparatus and for normal golgi movement in plants. Plant Cell 12 2201 2218

19. MuslinAJ 2001 Road Rage: Cardiac Rab1 and ER-to-Golgi Traffic. Circ Res 89 1087 1088

20. FilipeanuCMZhouFClaycombWCWuG 2004 Regulation of the cell surface expression and function of angiotensin II type 1 receptor by Rab1-mediated endoplasmic reticulum-to-Golgi transport in cardiac myocytes. J Biol Chem 279 41077 41084

21. GrosshansBLOrtizDNovickP 2006 Rabs and their effectors: achieving specificity in membrane traffic. Proc Natl Acad Sci U S A 103 11821 11827

22. HaasAKYoshimuraSStephensDJPreisingerCFuchsE 2007 Analysis of GTPase-activating proteins: Rab1 and Rab43 are key Rabs required to maintain a functional Golgi complex in human cells. J Cell Sci 120 2997 3010

23. YinHLiQQianGWangYLiY 2011 Rab1 GTPase regulates phenotypic modulation of pulmonary artery smooth muscle cells by mediating the transport of angiotensin II type 1 receptor under hypoxia. Int J Biochem Cell Biol 43 401 408

24. AllanBBMoyerBDBalchWE 2000 Rab1 recruitment of p115 into a cis-SNARE complex: programming budding COPII vesicles for fusion. Science 289 444 448

25. MoyerBDAllanBBBalchWE 2001 Rab1 interaction with a GM130 effector complex regulates COPII vesicle cis–Golgi tethering. Traffic 2 268 276

26. BeardMSatohAShorterJWarrenG 2005 A cryptic Rab1-binding site in the p115 tethering protein. J Biol Chem 280 25840 25848

27. SztulELupashinV 2006 Role of tethering factors in secretory membrane traffic. Am J Physiol Cell Physiol 290 C11 26

28. Albert-WeissenbergerCCazaletCBuchrieserC 2007 Legionella pneumophila - a human pathogen that co-evolved with fresh water protozoa. Cell Mol Life Sci 64 432 448

29. HorwitzMA 1983 Formation of a novel phagosome by the Legionnaires' disease bacterium (Legionella pneumophila) in human monocytes. J Exp Med 158 1319 1331

30. Sturgill-KoszyckiSSwansonMS 2000 Legionella pneumophila replication vacuoles mature into acidic, endocytic organelles. J Exp Med 192 1261 1272

31. EnsmingerAWIsbergRR 2009 Legionella pneumophila Dot/Icm translocated substrates: a sum of parts. Curr Opin Microbiol 12 67 73

32. DerreIIsbergRR 2004 Legionella pneumophila replication vacuole formation involves rapid recruitment of proteins of the early secretory system. Infect Immun 72 3048 3053

33. BruggemannHCazaletCBuchrieserC 2006 Adaptation of Legionella pneumophila to the host environment: role of protein secretion, effectors and eukaryotic-like proteins. Curr Opin Microbiol 9 86 94

34. NinioSRoyCR 2007 Effector proteins translocated by Legionella pneumophila: strength in numbers. Trends Microbiol 15 372 380

35. ShinSRoyCR 2008 Host cell processes that influence the intracellular survival of Legionella pneumophila. Cell Microbiol 10 1209 1220

36. IsbergRRO'ConnorTJHeidtmanM 2009 The Legionella pneumophila replication vacuole: making a cosy niche inside host cells. Nat Rev Microbiol 7 13 24

37. WuG 2008 Regulation of the trafficking and function of G protein-coupled receptors by Rab1 GTPase in cardiomyocytes. Methods Enzymol 438 227 238

38. ZhuangXAdipietroKADattaSNorthupJKRayK 2010 Rab1 small GTP-binding protein regulates cell surface trafficking of the human calcium-sensing receptor. Endocrinology 151 5114 5123

39. MachnerMPIsbergRR 2006 Targeting of host Rab GTPase function by the intravacuolar pathogen Legionella pneumophila. Dev Cell 11 47 56

40. MurataTDelpratoAIngmundsonAToomreDKLambrightDG 2006 The Legionella pneumophila effector protein DrrA is a Rab1 guanine nucleotide-exchange factor. Nat Cell Biol 8 971 977

41. BrumellJHScidmoreMA 2007 Manipulation of rab GTPase function by intracellular bacterial pathogens. Microbiol Mol Biol Rev 71 636 652

42. KaganJCSteinMPPypaertMRoyCR 2004 Legionella subvert the functions of Rab1 and Sec22b to create a replicative organelle. J Exp Med 199 1201 1211

43. NeunuebelMRChenYGasparAHBacklundPSJrYergeyA 2011 De-AMPylation of the small GTPase Rab1 by the pathogen Legionella pneumophila. Science 333 453 456

44. IngmundsonADelpratoALambrightDGRoyCR 2007 Legionella pneumophila proteins that regulate Rab1 membrane cycling. Nature 450 365 369

45. MachnerMPIsbergRR 2007 A bifunctional bacterial protein links GDI displacement to Rab1 activation. Science 318 974 977

46. MullerMPPetersHBlumerJBlankenfeldtWGoodyRS 2010 The Legionella effector protein DrrA AMPylates the membrane traffic regulator Rab1b. Science 329 946 949

47. TanYLuoZQ 2011 Legionella pneumophila SidD is a deAMPylase that modifies Rab1. Nature 475 506 509

48. ConoverGMDerreIVogelJPIsbergRR 2003 The Legionella pneumophila LidA protein: a translocated substrate of the Dot/Icm system associated with maintenance of bacterial integrity. Mol Microbiol 48 305 321

49. DerreIIsbergRR 2005 LidA, a translocated substrate of the Legionella pneumophila type IV secretion system, interferes with the early secretory pathway. Infect Immun 73 4370 4380

50. NuofferCDavidsonHWMattesonJMeinkothJBalchWE 1994 A GDP-bound of rab1 inhibits protein export from the endoplasmic reticulum and transport between Golgi compartments. J Cell Biol 125 225 237

51. WilsonBSNuofferCMeinkothJLMcCafferyMFeramiscoJR 1994 A Rab1 mutant affecting guanine nucleotide exchange promotes disassembly of the Golgi apparatus. J Cell Biol 125 557 571

52. TisdaleEJBourneJRKhosravi-FarRDerCJBalchWE 1992 GTP-binding mutants of rab1 and rab2 are potent inhibitors of vesicular transport from the endoplasmic reticulum to the Golgi complex. J Cell Biol 119 749 761

53. StroupeCBrungerAT 2000 Crystal structures of a Rab protein in its inactive and active conformations. J Mol Biol 304 585 598

54. EathirajSPanXRitaccoCLambrightDG 2005 Structural basis of family-wide Rab GTPase recognition by rabenosyn-5. Nature 436 415 419

55. PfefferSR 2005 Structural clues to Rab GTPase functional diversity. J Biol Chem 280 15485 15488

56. UrwylerSNyfelerYRagazCLeeHMuellerLN 2009 Proteome analysis of Legionella vacuoles purified by magnetic immunoseparation reveals secretory and endosomal GTPases. Traffic 10 76 87

57. WilsonALErdmanRAMalteseWA 1996 Association of Rab1B with GDP-dissociation inhibitor (GDI) is required for recycling but not initial membrane targeting of the Rab protein. J Biol Chem 271 10932 10940

58. StorrieB 2005 Microinjection as a tool to explore small GTPase function. Methods Enzymol 404 26 42

59. SchoebelSOesterlinLKBlankenfeldtWGoodyRSItzenA 2009 RabGDI displacement by DrrA from Legionella is a consequence of its guanine nucleotide exchange activity. Mol Cell 36 1060 1072

60. SuhHYLeeDWLeeKHKuBChoiSJ 2010 Structural insights into the dual nucleotide exchange and GDI displacement activity of SidM/DrrA. EMBO J 29 496 504

61. ZhuYHuLZhouYYaoQLiuL 2010 Structural mechanism of host Rab1 activation by the bifunctional Legionella type IV effector SidM/DrrA. Proc Natl Acad Sci U S A 107 4699 4704

62. BrombacherEUrwylerSRagazCWeberSSKamiK 2009 Rab1 guanine nucleotide exchange factor SidM is a major phosphatidylinositol 4-phosphate-binding effector protein of Legionella pneumophila. J Biol Chem 284 4846 4856

63. MarkgrafDFPeplowskaKUngermannC 2007 Rab cascades and tethering factors in the endomembrane system. FEBS Lett 581 2125 2130

64. ShiraneMNakayamaKI 2006 Protrudin induces neurite formation by directional membrane trafficking. Science 314 818 821

65. Otwinowski ZMW 1997 Processing of X-ray Diffration Data Collected in Oscillation Mode. Methods in Enzymology 276 20

66. McCoyAJGrosse-KunstleveRWAdamsPDWinnMDStoroniLC 2007 Phaser crystallographic software. J Appl Crystallogr 40 658 674

67. 1994 The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 50 760 763

68. EmsleyPCowtanK 2004 Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60 2126 2132

69. AdamsPDGrosse-KunstleveRWHungLWIoergerTRMcCoyAJ 2002 PHENIX: building new software for automated crystallographic structure determination. Acta Crystallogr D Biol Crystallogr 58 1948 1954

Štítky
Hygiena a epidemiológia Infekčné lekárstvo Laboratórium

Článok vyšiel v časopise

PLOS Pathogens


2012 Číslo 3
Najčítanejšie tento týždeň
Najčítanejšie v tomto čísle
Kurzy

Zvýšte si kvalifikáciu online z pohodlia domova

Aktuální možnosti diagnostiky a léčby litiáz
nový kurz
Autori: MUDr. Tomáš Ürge, PhD.

Všetky kurzy
Prihlásenie
Zabudnuté heslo

Zadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.

Prihlásenie

Nemáte účet?  Registrujte sa

#ADS_BOTTOM_SCRIPTS#