#PAGE_PARAMS# #ADS_HEAD_SCRIPTS# #MICRODATA#

An Evolutionary Genomic Approach to Identify Genes Involved in Human Birth Timing


Coordination of fetal maturation with birth timing is essential for mammalian reproduction. In humans, preterm birth is a disorder of profound global health significance. The signals initiating parturition in humans have remained elusive, due to divergence in physiological mechanisms between humans and model organisms typically studied. Because of relatively large human head size and narrow birth canal cross-sectional area compared to other primates, we hypothesized that genes involved in parturition would display accelerated evolution along the human and/or higher primate phylogenetic lineages to decrease the length of gestation and promote delivery of a smaller fetus that transits the birth canal more readily. Further, we tested whether current variation in such accelerated genes contributes to preterm birth risk. Evidence from allometric scaling of gestational age suggests human gestation has been shortened relative to other primates. Consistent with our hypothesis, many genes involved in reproduction show human acceleration in their coding or adjacent noncoding regions. We screened >8,400 SNPs in 150 human accelerated genes in 165 Finnish preterm and 163 control mothers for association with preterm birth. In this cohort, the most significant association was in FSHR, and 8 of the 10 most significant SNPs were in this gene. Further evidence for association of a linkage disequilibrium block of SNPs in FSHR, rs11686474, rs11680730, rs12473870, and rs1247381 was found in African Americans. By considering human acceleration, we identified a novel gene that may be associated with preterm birth, FSHR. We anticipate other human accelerated genes will similarly be associated with preterm birth risk and elucidate essential pathways for human parturition.


Vyšlo v časopise: An Evolutionary Genomic Approach to Identify Genes Involved in Human Birth Timing. PLoS Genet 7(4): e32767. doi:10.1371/journal.pgen.1001365
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1001365

Souhrn

Coordination of fetal maturation with birth timing is essential for mammalian reproduction. In humans, preterm birth is a disorder of profound global health significance. The signals initiating parturition in humans have remained elusive, due to divergence in physiological mechanisms between humans and model organisms typically studied. Because of relatively large human head size and narrow birth canal cross-sectional area compared to other primates, we hypothesized that genes involved in parturition would display accelerated evolution along the human and/or higher primate phylogenetic lineages to decrease the length of gestation and promote delivery of a smaller fetus that transits the birth canal more readily. Further, we tested whether current variation in such accelerated genes contributes to preterm birth risk. Evidence from allometric scaling of gestational age suggests human gestation has been shortened relative to other primates. Consistent with our hypothesis, many genes involved in reproduction show human acceleration in their coding or adjacent noncoding regions. We screened >8,400 SNPs in 150 human accelerated genes in 165 Finnish preterm and 163 control mothers for association with preterm birth. In this cohort, the most significant association was in FSHR, and 8 of the 10 most significant SNPs were in this gene. Further evidence for association of a linkage disequilibrium block of SNPs in FSHR, rs11686474, rs11680730, rs12473870, and rs1247381 was found in African Americans. By considering human acceleration, we identified a novel gene that may be associated with preterm birth, FSHR. We anticipate other human accelerated genes will similarly be associated with preterm birth risk and elucidate essential pathways for human parturition.


Zdroje

1. EsplinMS

2006 Preterm birth: a review of genetic factors and future directions for genetic study. Obstet Gynecol Surv 61 800 806

2. GreenNS

DamusK

SimpsonJL

IamsJ

ReeceEA

2005 Research agenda for preterm birth: recommendations from the March of Dimes. Am J Obstet Gynecol 193 626 635

3. BootheRG

DobsonV

TellerDY

1985 Postnatal development of vision in human and nonhuman primates. Annu Rev Neurosci 8 495 545

4. SmithBH

1989 Dental Development as a Measure of Life-History in Primates. Evolution 43 683 688

5. SmithR

2007 Parturition. N Engl J Med 356 271 283

6. RosenbergK

TrevathanW

2002 Birth, obstetrics and human evolution. BJOG 109 1199 1206

7. WeaverTD

HublinJJ

2009 Neandertal birth canal shape and the evolution of human childbirth. Proc Natl Acad Sci U S A 106 8151 8156

8. Chimpanzee Sequencing and Analysis Consortium 2005 Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437 69 87

9. ClarkAG

GlanowskiS

NielsenR

ThomasPD

KejariwalA

2003 Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios. Science 302 1960 1963

10. BustamanteCD

Fledel-AlonA

WilliamsonS

NielsenR

HubiszMT

2005 Natural selection on protein-coding genes in the human genome. Nature 437 1153 1157

11. PollardKS

SalamaSR

LambertN

LambotMA

CoppensS

2006 An RNA gene expressed during cortical development evolved rapidly in humans. Nature 443 167 172

12. ChaudhariBP

PlunkettJ

RatajczakCK

ShenTT

DeFrancoEA

2008 The genetics of birth timing: insights into a fundamental component of human development. Clin Genet 74 493 501

13. PlunkettJ

BoreckiI

MorganT

StamilioD

MugliaLJ

2008 Population-based estimate of sibling risk for preterm birth, preterm premature rupture of membranes, placental abruption and pre-eclampsia. BMC Genet 9 44

14. PlunkettJ

FeitosaMF

TrusgnichM

WanglerMF

PalomarL

2009 Mother's genome or maternally-inherited genes acting in the fetus influence gestational age in familial preterm birth. Hum Hered 68 209 219

15. SacherGA

StaffeldtEF

1974 Relation of gestation time to brain weight for placental mammals: implications for the theory of vertebrate growth. The American Naturalist 108 593 615

16. WilcoxAJ

SkaervenR

LieRT

2008 Familial patterns of preterm delivery: maternal and fetal contributions. Am J Epidemiol 167 474 479

17. EhnNL

CooperME

OrrK

ShiM

JohnsonMK

2007 Evaluation of fetal and maternal genetic variation in the progesterone receptor gene for contributions to preterm birth. Pediatr Res 62 630 635

18. WangH

ParryS

MaconesG

SammelMD

FerrandPE

2004 Functionally significant SNP MMP8 promoter haplotypes and preterm premature rupture of membranes (PPROM). Hum Mol Genet 13 2659 2669

19. StoreyJD

TibshiraniR

2003 Statistical significance for genomewide studies. Proc Natl Acad Sci U S A 100 9440 9445

20. PrabhakarS

NoonanJP

PaaboS

RubinEM

2006 Accelerated evolution of conserved noncoding sequences in humans. Science 314 786

21. WheelerDL

BarrettT

BensonDA

BryantSH

CaneseK

2007 Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 35 D5 12

22. KistkaZA

DeFrancoEA

LigthartL

WillemsenG

PlunkettJ

2008 Heritability of parturition timing: an extended twin design analysis. Am J Obstet Gynecol 199 43 e41 45

23. VoightBF

KudaravalliS

WenX

PritchardJK

2006 A map of recent positive selection in the human genome. PLoS Biol 4 e72 doi:10.1371/journal.pbio.0040072

24. BirdCP

StrangerBE

LiuM

ThomasDJ

IngleCE

2007 Fast-evolving noncoding sequences in the human genome. Genome Biol 8 R118

25. LussianaC

GuaniB

MariC

RestagnoG

MassobrioM

2008 Mutations and polymorphisms of the FSH receptor (FSHR) gene: clinical implications in female fecundity and molecular biology of FSHR protein and gene. Obstet Gynecol Surv 63 785 795

26. MeduriG

BachelotA

CoccaMP

VasseurC

RodienP

2008 Molecular pathology of the FSH receptor: new insights into FSH physiology. Mol Cell Endocrinol 282 130 142

27. LudwigM

2009 Are adverse outcomes associated with assisted reproduction related to the technology or couples' subfertility? Nat Clin Pract Urol 6 8 9

28. RomundstadLB

RomundstadPR

SundeA

von DuringV

SkjaervenR

2008 Effects of technology or maternal factors on perinatal outcome after assisted fertilisation: a population-based cohort study. Lancet 372 737 743

29. HascalikS

CelikO

TaglukME

YildirimA

AydinNE

2009 Effects of highly purified urinary FSH and human menopausal FSH on Uterine Myoelectrical Dynamics. Mol Hum Reprod

30. MizrachiD

ShemeshM

1999 Follicle-stimulating hormone receptor and its messenger ribonucleic acid are present in the bovine cervix and can regulate cervical prostanoid synthesis. Biol Reprod 61 776 784

31. ShemeshM

MizrachiD

GurevichM

StramY

ShoreLS

2001 Functional importance of bovine myometrial and vascular LH receptors and cervical FSH receptors. Semin Reprod Med 19 87 96

32. FrazerKA

BallingerDG

CoxDR

HindsDA

StuveLL

2007 A second generation human haplotype map of over 3.1 million SNPs. Nature 449 851 861

33. LiY

GantaS

ChengC

CraigR

GantaRR

2007 FSH stimulates ovarian cancer cell growth by action on growth factor variant receptor. Mol Cell Endocrinol 267 26 37

34. PadmanabhanV

SonsteinJ

OltonPL

NippoldtT

MenonKM

1989 Serum bioactive follicle-stimulating hormone-like activity increases during pregnancy. J Clin Endocrinol Metab 69 968 977

35. SimoniM

GromollJ

NieschlagE

1997 The follicle-stimulating hormone receptor: biochemistry, molecular biology, physiology, and pathophysiology. Endocr Rev 18 739 773

36. DanilovichN

RoyI

SairamMR

2002 Emergence of uterine pathology during accelerated biological aging in FSH receptor-haploinsufficient mice. Endocrinology 143 3618 3627

37. FaustinoNA

CooperTA

2003 Pre-mRNA splicing and human disease. Genes Dev 17 419 437

38. PaganiF

StuaniC

TzetisM

KanavakisE

EfthymiadouA

2003 New type of disease causing mutations: the example of the composite exonic regulatory elements of splicing in CFTR exon 12. Hum Mol Genet 12 1111 1120

39. Committee on Understanding Premature Birth and Assuring Healthy Outcomes 2006 Preterm Birth: Causes, Consequences, and Prevention;

BehrmanRE

ButlerAS

Washington D.C. The National Academies Press

40. R Development Core Team 2009 R: A language and environment for statistical computing: R Foundation for Stastical Computing

41. PurvisA

1995 A composite estimate of primate phylogeny. Philos Trans R Soc Lond B Biol Sci 348 405 421

42. MaddisonW

MaddisonD

2009 Mesquite: a modular system for evolutionary analysis: http://mesquiteproject.org. Accessed September 2010.

43. HubbardTJ

AkenBL

BealK

BallesterB

CaccamoM

2007 Ensembl 2007. Nucleic Acids Res 35 D610 617

44. KuhnRM

KarolchikD

ZweigAS

TrumbowerH

ThomasDJ

2007 The UCSC genome browser database: update 2007. Nucleic Acids Res 35 D668 673

45. BlanchetteM

KentWJ

RiemerC

ElnitskiL

SmitAF

2004 Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res 14 708 715

46. PondSL

FrostSD

MuseSV

2005 HyPhy: hypothesis testing using phylogenies. Bioinformatics 21 676 679

47. MuseSV

GautBS

1994 A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome. Mol Biol Evol 11 715 724

48. NielsenR

BustamanteC

ClarkAG

GlanowskiS

SacktonTB

2005 A scan for positively selected genes in the genomes of humans and chimpanzees. PLoS Biol 3 e170 doi:10.1371/journal.pbio.0030170

49. ArbizaL

DopazoJ

DopazoH

2006 Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome. PLoS Comput Biol 2 e38 doi:10.1371/journal.pcbi.0020038

50. BaileyJA

GuZ

ClarkRA

ReinertK

SamonteRV

2002 Recent segmental duplications in the human genome. Science 297 1003 1007

51. HaflerDA

CompstonA

SawcerS

LanderES

DalyMJ

2007 Risk alleles for multiple sclerosis identified by a genomewide study. N Engl J Med 357 851 862

52. PurcellS

NealeB

Todd-BrownK

ThomasL

FerreiraMA

2007 PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81 559 575

53. GaoX

BeckerLC

BeckerDM

StarmerJD

ProvinceMA

2009 Avoiding the high Bonferroni penalty in genome-wide association studies. Genet Epidemiol

54. PritchardJK

StephensM

DonnellyP

2000 Inference of population structure using multilocus genotype data. Genetics 155 945 959

Štítky
Genetika Reprodukčná medicína

Článok vyšiel v časopise

PLOS Genetics


2011 Číslo 4
Najčítanejšie tento týždeň
Najčítanejšie v tomto čísle
Kurzy

Zvýšte si kvalifikáciu online z pohodlia domova

Aktuální možnosti diagnostiky a léčby litiáz
nový kurz
Autori: MUDr. Tomáš Ürge, PhD.

Všetky kurzy
Prihlásenie
Zabudnuté heslo

Zadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.

Prihlásenie

Nemáte účet?  Registrujte sa

#ADS_BOTTOM_SCRIPTS#