Drift and Genome Complexity Revisited

article has not abstract

Vyšlo v časopise: Drift and Genome Complexity Revisited. PLoS Genet 7(6): e32767. doi:10.1371/journal.pgen.1002092
Kategorie: Viewpoints
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1002092

Souhrn

article has not abstract

Zdroje

1. WhitneyKDGarlandTJr

2010

Did genetic drift drive increases in genome

complexity?

PLoS Genet

e1001080

doi:10.1371/journal.pgen.1001080

2. LynchMConeryJS

2003

The origins of genome complexity.

Science

302

1401

1404

3. LynchM

2011

Statistical inference on the mechanisms of genome

evolution.

PLoS Genet

e1001389. doi: 10.1371/journal.pgen.1001389

4. GarlandTJrBennettAFRezendeEL

2005

Phylogenetic approaches in comparative

physiology.

J Exp Biol

208

3015

3035

5. GarlandTMidfordPEIvesAR

1999

An introduction to phylogenetically based statistical methods,

with a new method for confidence intervals on ancestral

values.

Am Zool

374

388

6. LynchMConeryJS

2004b

Testing genome complexity - response.

Science

304

390

7. BlombergSPGarlandTIvesAR

2003

Testing for phylogenetic signal in comparative data: Behavioral

traits are more labile.

Evolution

717

745

8. FreckletonRPHarveyPHPagelM

2002

Phylogenetic analysis and comparative data: A test and review of

evidence.

Am Nat

160

712

726

9. LavinSRKarasovWHIvesARMiddletonKMGarlandT

2008

Morphometrics of the avian small intestine compared with that of

nonflying mammals: A phylogenetic approach.

Physiol Zool

526

550

10. HueyRBDeutschCATewksburyJJVittLJHertzPE

2009

Why tropical forest lizards are vulnerable to climate

warming.

Proc Biol Sci

276

1939

1948

11. SwansonDLGarlandT

2009

The evolution of high summit metabolism and cold tolerance in

birds and its impact on present-day distributions.

Evolution

184

194

12. RicklefsREStarckJM

1996

Applications of phylogenetically independent contrasts: A mixed

progress report.

Oikos

167

172

13. RohlfFJ

2006

A comment on phylogenetic correction.

Evolution

1509

1515

14. IvesARMidfordPEGarlandT

2007

Within-species variation and measurement error in phylogenetic

comparative methods.

Syst Biol

252

270

15. Diaz-UriarteRGarlandT

1998

Effects of branch length errors on the performance of

phylogenetically independent contrasts.

Syst Biol

654

672

16. HutcheonJMGarlandT

2004

Are megabats big?

J Mammal Evol

257

276

17. AdoutteABalavoineGLartillotNLespinetOPrud'hommeB

2000

The new animal phylogeny: Reliability and

implications.

Proc Natl Acad Sci U S A

4453

4456

18. DelsucFBrinkmannHChourroutDPhilippeH

2006

Tunicates and not cephalochordates are the closest living

relatives of vertebrates.

Nature

439

965

968

19. DunnCWHejnolAMatusDQPangKBrowneWE

2008

Broad phylogenomic sampling improves resolution of the animal

tree of life.

Nature

452

745-U745

20. PhilippeHDerelleRLopezPPickKBorchielliniC

2009

Phylogenomics revives traditional views on deep animal

relationships.

Curr Biol

706

712

21. FelsensteinJ

1988

Phylogenies and quantitative characters.

Annu Rev Ecol Syst

445

471

22. LynchM

2007

The origins of genome architecture.

Sunderland (Massachusetts)

Sinauer Associates

23. GarlandTIvesAR

2000

Using the past to predict the present: Confidence intervals for

regression equations in phylogenetic comparative methods.

Am Nat

155

346

364

24. ChappellR

1989

Fitting bent lines to data, with applications to

allometry.

J Theor Biol

138

235

256

25. WhitneyKDBaackEJHamrickJLGodtMJWBarringerBC

2010

A role for nonadaptive processes in plant genome size

evolution?

Evolution

2097

2109

26. KuoCHMoranNAOchmanH

2009

The consequences of genetic drift for bacterial genome

complexity.

Genome Res

1450

1454

27. DaubinVMoranNA

2004

Comment on "The origins of genome complexity".

Science

306

978a

28. YangZHBielawskiJP

2000

Statistical methods for detecting molecular

adaptation.

Trends Ecol Evol

496

503

29. KuoCHOchmanH

2009

Deletional bias across the three domains of life.

Genome Biol Evol

145

152

30. LynchMConeryJS

2004a

Response to comment on "The origins of genome

complexity".

Science

306

978a

31. DenverDRMorrisKLynchMThomasWK

2004

High mutation rate and predominance of insertions in the

Caenorhabditis elegans nuclear genome.

Nature

430

679

682

32. NilssonAIKoskiniemiSErikssonSKugelbergEHintonJCD

2005

Bacterial genome size reduction by experimental

evolution.

Proc Natl Acad Sci U S A

102

12112

12116

33. CharlesworthBBartonN

2004

Genome size: Does bigger mean worse?

Curr Biol

R233

R235

34. KembelSWCowanPDHelmusMRCornwellWKMorlonH

2010

Picante: R tools for integrating phylogenies and

ecology.

Bioinformatics

1463

1464

35. R Development Core Team

2010

R: A language and environment for statistical

computing.

Version 2.11.1

Vienna

R Foundation for Statistical Computing

Štítky

Genetika Reprodukčná medicína

Článek Local Absence of Secondary Structure Permits Translation of mRNAs that Lack Ribosome-Binding Sites

Článek Statistical Inference on the Mechanisms of Genome Evolution

Článek Revisiting Heterochromatin in Embryonic Stem Cells

Článek A Two-Stage Meta-Analysis Identifies Several New Loci for Parkinson's Disease

Článek Identification of a Sudden Cardiac Death Susceptibility Locus at 2q24.2 through Genome-Wide Association in European Ancestry Individuals

Článek Genomic Prevalence of Heterochromatic H3K9me2 and Transcription Do Not Discriminate Pluripotent from Terminally Differentiated Cells

Článek Epistasis between Beneficial Mutations and the Phenotype-to-Fitness Map for a ssDNA Virus

Článek Recurrent Chromosome 16p13.1 Duplications Are a Risk Factor for Aortic Dissections

Článek Telomere DNA Deficiency Is Associated with Development of Human Embryonic Aneuploidy

Článek Genome-Wide Association Study of White Blood Cell Count in 16,388 African Americans: the Continental Origins and Genetic Epidemiology Network (COGENT)

Článek Unexpected Role for DNA Polymerase I As a Source of Genetic Variability

Článek Transportin-SR Is Required for Proper Splicing of Genes and Plant Immunity

Článek How Chromatin Is Remodelled during DNA Repair of UV-Induced DNA Damage in

Článek Independent Chromatin Binding of ARGONAUTE4 and SPT5L/KTF1 Mediates Transcriptional Gene Silencing

Článek Two Evolutionary Histories in the Genome of Rice: the Roles of Domestication Genes

Článek Natural Allelic Variation Defines a Role for : Trichome Cell Fate Determination

Článek Multiple Common Susceptibility Variants near BMP Pathway Loci , , and Explain Part of the Missing Heritability of Colorectal Cancer

Článek Pathogenic Mechanism of the FIG4 Mutation Responsible for Charcot-Marie-Tooth Disease CMT4J

Článek A Functional Variant in Promoter Modulates Its Expression and Confers Disease Risk for Systemic Lupus Erythematosus

Článek Chromosomal Macrodomains and Associated Proteins: Implications for DNA Organization and Replication in Gram Negative Bacteria

Článek Trade-Off between Bile Resistance and Nutritional Competence Drives Diversification in the Mouse Gut

Článek Pathways of Distinction Analysis: A New Technique for Multi–SNP Analysis of GWAS Data

Článek Web-Based Genome-Wide Association Study Identifies Two Novel Loci and a Substantial Genetic Component for Parkinson's Disease

Článek Chk2 and p53 Are Haploinsufficient with Dependent and Independent Functions to Eliminate Cells after Telomere Loss

Článek Exome Sequencing Identifies Mutations in High Myopia

Článek Distinct Functional Constraints Partition Sequence Conservation in a -Regulatory Element

Článek CorE from Is a Copper-Dependent RNA Polymerase Sigma Factor

Článek A Single Sex Pheromone Receptor Determines Chemical Response Specificity of Sexual Behavior in the Silkmoth

Článek FGF Signaling Regulates the Number of Posterior Taste Papillae by Controlling Progenitor Field Size

Článek Maps of Open Chromatin Guide the Functional Follow-Up of Genome-Wide Association Signals: Application to Hematological Traits

Článek Increased Susceptibility to Cortical Spreading Depression in the Mouse Model of Familial Hemiplegic Migraine Type 2

Článek Differential Gene Expression and Epiregulation of Alpha Zein Gene Copies in Maize Haplotypes

Článek Parallel Adaptive Divergence among Geographically Diverse Human Populations

Článek Genetic Analysis of Genome-Scale Recombination Rate Evolution in House Mice

Článek Mechanisms for the Evolution of a Derived Function in the Ancestral Glucocorticoid Receptor

Článek Mammalian BTBD12 (SLX4) Protects against Genomic Instability during Mammalian Spermatogenesis

Článek Interferon Regulatory Factor 8 Regulates Pathways for Antigen Presentation in Myeloid Cells and during Tuberculosis

Článek High-Resolution Analysis of Parent-of-Origin Allelic Expression in the Arabidopsis Endosperm

Článek Specific SKN-1/Nrf Stress Responses to Perturbations in Translation Elongation and Proteasome Activity

Článek Graded Nodal/Activin Signaling Titrates Conversion of Quantitative Phospho-Smad2 Levels into Qualitative Embryonic Stem Cell Fate Decisions

Článek Genome-Wide Analysis Reveals PADI4 Cooperates with Elk-1 to Activate Expression in Breast Cancer Cells

Článek Trait Variation in Yeast Is Defined by Population History

Článek Meiosis-Specific Loading of the Centromere-Specific Histone CENH3 in

Článek A Genome-Wide Survey of Imprinted Genes in Rice Seeds Reveals Imprinting Primarily Occurs in the Endosperm

Článek Multiple Regulatory Mechanisms to Inhibit Untimely Initiation of DNA Replication Are Important for Stable Genome Maintenance

Článek SIRT1 Promotes N-Myc Oncogenesis through a Positive Feedback Loop Involving the Effects of MKP3 and ERK on N-Myc Protein Stability

Článek Bacteriophage Crosstalk: Coordination of Prophage Induction by Trans-Acting Antirepressors

Článek Role of the Single-Stranded DNA–Binding Protein SsbB in Pneumococcal Transformation: Maintenance of a Reservoir for Genetic Plasticity

Článek Genomic Convergence among ERRα, PROX1, and BMAL1 in the Control of Metabolic Clock Outputs

Článek Genome-Wide Association of Bipolar Disorder Suggests an Enrichment of Replicable Associations in Regions near Genes

Článek Identification of Nine Novel Loci Associated with White Blood Cell Subtypes in a Japanese Population

Článek DNA Ligase III Promotes Alternative Nonhomologous End-Joining during Chromosomal Translocation Formation

Článek Differential Effects of and Risk Variants on Association with Diabetic ESRD in African Americans

Článek Finished Genome of the Fungal Wheat Pathogen Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis

Článek Dynamic Chromatin Localization of Sirt6 Shapes Stress- and Aging-Related Transcriptional Networks

Článek Extracellular Matrix Dynamics in Hepatocarcinogenesis: a Comparative Proteomics Study of Transgenic and Null Mouse Models

Článek Integrating 5-Hydroxymethylcytosine into the Epigenomic Landscape of Human Embryonic Stem Cells

Článek Vive La Différence: An Interview with Catherine Dulac

Článek Multiple Loci Are Associated with White Blood Cell Phenotypes

Článek Nuclear Accumulation of Stress Response mRNAs Contributes to the Neurodegeneration Caused by Fragile X Premutation rCGG Repeats

Článek A New Mutation Affecting FRQ-Less Rhythms in the Circadian System of

Článek Cryptic Transcription Mediates Repression of Subtelomeric Metal Homeostasis Genes

Článek A New Isoform of the Histone Demethylase JMJD2A/KDM4A Is Required for Skeletal Muscle Differentiation

Článek Genetic Determinants of Lipid Traits in Diverse Populations from the Population Architecture using Genomics and Epidemiology (PAGE) Study

Článek A Genome-Wide RNAi Screen for Factors Involved in Neuronal Specification in

Článok vyšiel v časopise

PLOS Genetics

2011 Číslo 6

Najčítanejšie tento týždeň

Najčítanejšie v tomto čísle

Kurzy

Zvýšte si kvalifikáciu online z pohodlia domova

Aktuální možnosti diagnostiky a léčby litiáz

nový kurz

Autori: MUDr. Tomáš Ürge, PhD.

Všetky kurzy