Big Data Opportunities for Global Infectious Disease Surveillance

1. Wertheim HFL, Horby P, Woodall JP (2012) Atlas of human infectious diseases. Oxford: Wiley-Blackwell.

2. HaySI, BattleKB, PigottDM, SmithDL, MoyesCL, et al. (2013) Global mapping of infectious disease. Philos Trans R Soc Lond B 368: 20120250.

3. BrownsteinJS, FreifeldCC, ReisBY, MandlKD (2008) Surveillance sans frontieres: internet-based emerging infectious disease intelligence and the HealthMap project. PLoS Med 5: e151 doi:10.1371/journal.pmed.0050151.

4. LyonA, NunnM, GrosselG, BurgmanM (2011) Comparison of web-based biosecurity intelligence systems: BioCaster, EpiSPIDER and HealthMap. Transbound Emerg Dis doi: 10.1111/j.1865-1682.2011.01258.x

5. SalathéM, BengtssonL, BodnarTJ, BrewerDD, BrownsteinJS, et al. (2012) Digital epidemiology. PLoS Comput Biol 8: e1002616 doi:10.1371/journal.pcbi.1002616.

6. ChanEH, BrewerTF, MadoffLC, PollackMP, SonrickerAL, et al. (2010) Global capacity for emerging infectious disease detection. Proc Natl Acad Sci U S A 107: 21701–21706.

7. MondorL, BrownsteinJS, ChanE, MadoffLC, PollackMP, et al. (2012) Timeliness of nongovernmental versus governmental global outbreak communications. Emerg Infect Dis 18: 1184–1187.

8. SimmonsCP, FarrarJJ, van Vinh ChauN, WillsB (2012) Dengue. N Engl J Med 366: 1423–1432.

9. BhattS, GethingPW, BradyOJ, MessinaJP, FarlowAW, et al. (2013) The global distribution and burden of dengue. Nature In press.

10. RogersDJ (2006) Models for vectors and vector-borne diseases. Adv Parasitol 62: 1–35.

11. Pfeiffer DU, Robinson TP, Stevenson M, Stevens KB, Rogers DJ, et al.. (2008) Spatial analysis in epidemiology. Oxford: Oxford University Press. 142 p.

12. HutchinsonGE (1957) Concluding remarks. Cold Spring Harbor Symp Quant Biol 22: 415–427.

13. SouthwoodTRE (1977) Habitat, templet for ecological strategies? Presidential address to British Ecological Society, 5 January 1977. J Anim Ecol 46: 337–365.

14. RogersDJ, WilsonAJ, HaySI, GrahamAJ (2006) The global distribution of yellow fever and dengue. Adv Parasitol 62: 181–220.

15. BensonDA, Karsch-MizrachiI, ClarkK, LipmanDJ, OstellJ, et al. (2012) GenBank. Nucleic Acids Res 40: D48–D53.

16. BradyOJ, GethingPW, BhattS, MessinaJP, BrownsteinJS, et al. (2012) Refining the global spatial limits of dengue virus transmission by evidence-based consensus. PLoS Negl Trop Dis 6: e1760 doi:10.1371/journal.pntd.0001760.

17. StoklandJN, HalvorsenR, StoaB (2011) Species distribution modelling. Effect of design and sample size of pseudo-absence observations. Ecol Model 222: 1800–1809.

18. ChefaouiRM, LoboJM (2008) Assessing the effects of pseudo-absences on predictive distribution model performance. Ecol Model 210: 478–486.

19. ElithJ, GrahamCH, AndersonRP, DudikM, FerrierS, et al. (2006) Novel methods improve prediction of species' distributions from occurrence data. Ecography 29: 129–151.

20. ElithJ, LeathwickJR, HastieT (2008) A working guide to boosted regression trees. J Anim Ecol 77: 802–813.

21. SinkaME, BangsMJ, ManguinS, Rubio-PalisY, ChareonviriyaphapT, et al. (2012) A global map of dominant malaria vectors. Parasit Vectors 5: 69.

22. BrownsteinJS, FreifeldCC, MadoffLC (2009) Digital disease detection - harnessing the Web for public health surveillance. N Engl J Med 360: 2153–2157.

23. SignoriniA, SegreAM, PolgreenPM (2011) The use of Twitter to track levels of disease activity and public concern in the US during the influenza A H1N1 pandemic. PLoS One 6: e19467 doi:10.1371/journal.pone.0019467.

24. O'Reilly Radar Team (2012) Planning for big data: A CIO's handbook to the changing data landscape. Dumbill E, editor. 1st edition. Sebastopol (California): O'Reilly Media Inc.

25. ChanEH, SahaiV, ConradC, BrownsteinJS (2011) Using web search query data to monitor dengue epidemics: a new model for neglected tropical disease surveillance. PLoS Negl Trop Dis 5: e1206 doi:10.1371/journal.pntd.0001206.

26. Hale SA, Gaffney D, Graham M (2012) Where in the world are you? Geolocation and language identification in Twitter. Oxford: University of Oxford. pp. 1–8.

27. Kamel BoulosMN, ReschB, CrowleyDN, BreslinJG, SohnG, et al. (2011) Crowdsourcing, citizen sensing and Sensor Web technologies for public and environmental health surveillance and crisis management: trends, OGC standards and application examples. Int J Health Geogr 10: 67.

28. Shirky C (2010) Cognitive surplus. Creativity and generosity in a connected age. London: Allen Lane, Penguin Books. 242 p.

29. ScharlemannJPW, BenzD, HaySI, PurseBV, TatemAJ, et al. (2008) Global data for ecology and epidemiology: a novel algorithm for temporal Fourier processing MODIS data. PLoS One 3: e1408 doi:10.1371/journal.pone.0001408.

30. DorlingD (2007) Worldmapper: the human anatomy of a small planet. PLoS Med 4: e1 doi:10.1371/journal.pmed.0040001.

31. GuernierV, HochbergME, GueganJF (2004) Ecology drives the worldwide distribution of human diseases. PLoS Biol 2: e141 doi:10.1371/journal.pbio.0020141.

32. JonesKE, PatelNG, LevyMA, StoreygardA, BalkD, et al. (2008) Global trends in emerging infectious diseases. Nature 451: 990–993.

33. MurrayCJL, VosT, LozanoR, NaghaviM, FlaxmanAD, et al. (2012) Disability-adjusted life years (DALYs) for 291 diseases and injuries in 21 regions, 1990–2010: a systematic analysis for the Global Burden of Disease Study 2010. Lancet 380: 2197–2223.