The Deacetylase Sirtuin 1 Regulates Human Papillomavirus Replication by Modulating Histone Acetylation and Recruitment of DNA Damage Factors NBS1 and Rad51 to Viral Genomes
Human papillomaviruses regulate their differentiation-dependent life cycles by activating a number of cellular pathways, such as the DNA damage response, through control of post-translational protein modification. Sirtuin 1 (SIRT1) is a protein deacetylase that regulates the acetylation of a number of cellular substrates, resulting in activation of pathways involved in gene expression and DNA damage repair. We report here that SIRT1 protein levels are elevated in cells stably maintaining genomes of oncogenic HPVs and that SIRT1 knockdown impairs genome maintenance, productive replication and late gene transcription. The DNA damage sensing and repair pathways are critical for the HPV viral life cycle and members of this pathway, such as NBS1 and Rad51, are targets of SIRT1. Our studies demonstrate that SIRT1 binds the HPV genome and regulates both viral chromatin remodeling as well as binding of members of the homologous repair pathway to viral DNA. These findings demonstrate that binding of SIRT1 to the HPV genome is necessary for histone deacetylation and recruitment of DNA damage repair factors and is a critical step in the HPV life cycle.
Vyšlo v časopise:
The Deacetylase Sirtuin 1 Regulates Human Papillomavirus Replication by Modulating Histone Acetylation and Recruitment of DNA Damage Factors NBS1 and Rad51 to Viral Genomes. PLoS Pathog 11(9): e32767. doi:10.1371/journal.ppat.1005181
Kategorie:
Research Article
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.ppat.1005181
Souhrn
Human papillomaviruses regulate their differentiation-dependent life cycles by activating a number of cellular pathways, such as the DNA damage response, through control of post-translational protein modification. Sirtuin 1 (SIRT1) is a protein deacetylase that regulates the acetylation of a number of cellular substrates, resulting in activation of pathways involved in gene expression and DNA damage repair. We report here that SIRT1 protein levels are elevated in cells stably maintaining genomes of oncogenic HPVs and that SIRT1 knockdown impairs genome maintenance, productive replication and late gene transcription. The DNA damage sensing and repair pathways are critical for the HPV viral life cycle and members of this pathway, such as NBS1 and Rad51, are targets of SIRT1. Our studies demonstrate that SIRT1 binds the HPV genome and regulates both viral chromatin remodeling as well as binding of members of the homologous repair pathway to viral DNA. These findings demonstrate that binding of SIRT1 to the HPV genome is necessary for histone deacetylation and recruitment of DNA damage repair factors and is a critical step in the HPV life cycle.
Zdroje
1. Moody CA, Laimins LA. Human papillomaviruses activate the ATM DNA damage pathway for viral genome amplification upon differentiation. PLoS pathogens. 2009;5(10):e1000605. doi: 10.1371/journal.ppat.1000605 19798429; PubMed Central PMCID: PMC2745661.
2. Rajendran R, Garva R, Krstic-Demonacos M, Demonacos C. Sirtuins: molecular traffic lights in the crossroad of oxidative stress, chromatin remodeling, and transcription. Journal of biomedicine & biotechnology. 2011;2011:368276. doi: 10.1155/2011/368276 21912480; PubMed Central PMCID: PMC3168296.
3. Gottlieb S, Esposito RE. A new role for a yeast transcriptional silencer gene, SIR2, in regulation of recombination in ribosomal DNA. Cell. 1989;56(5):771–6. 2647300.
4. Tsukamoto Y, Kato J, Ikeda H. Silencing factors participate in DNA repair and recombination in Saccharomyces cerevisiae. Nature. 1997;388(6645):900–3. doi: 10.1038/42288 9278054.
5. Kaeberlein M, McVey M, Guarente L. The SIR2/3/4 complex and SIR2 alone promote longevity in Saccharomyces cerevisiae by two different mechanisms. Genes & development. 1999;13(19):2570–80. 10521401; PubMed Central PMCID: PMC317077.
6. Palacios JA, Herranz D, De Bonis ML, Velasco S, Serrano M, Blasco MA. SIRT1 contributes to telomere maintenance and augments global homologous recombination. The Journal of cell biology. 2010;191(7):1299–313. doi: 10.1083/jcb.201005160 21187328; PubMed Central PMCID: PMC3010065.
7. Uhl M, Csernok A, Aydin S, Kreienberg R, Wiesmuller L, Gatz SA. Role of SIRT1 in homologous recombination. DNA repair. 2010;9(4):383–93. doi: 10.1016/j.dnarep.2009.12.020 20097625.
8. Yuan Z, Seto E. A functional link between SIRT1 deacetylase and NBS1 in DNA damage response. Cell cycle. 2007;6(23):2869–71. 18156798.
9. Oberdoerffer P, Michan S, McVay M, Mostoslavsky R, Vann J, Park SK, et al. SIRT1 redistribution on chromatin promotes genomic stability but alters gene expression during aging. Cell. 2008;135(5):907–18. doi: 10.1016/j.cell.2008.10.025 19041753; PubMed Central PMCID: PMC2853975.
10. Yuan Z, Zhang X, Sengupta N, Lane WS, Seto E. SIRT1 regulates the function of the Nijmegen breakage syndrome protein. Molecular cell. 2007;27(1):149–62. doi: 10.1016/j.molcel.2007.05.029 17612497; PubMed Central PMCID: PMCPMC2679807.
11. Vaquero A, Scher M, Lee D, Erdjument-Bromage H, Tempst P, Reinberg D. Human SirT1 interacts with histone H1 and promotes formation of facultative heterochromatin. Molecular cell. 2004;16(1):93–105. doi: 10.1016/j.molcel.2004.08.031 15469825.
12. Imai S, Armstrong CM, Kaeberlein M, Guarente L. Transcriptional silencing and longevity protein Sir2 is an NAD-dependent histone deacetylase. Nature. 2000;403(6771):795–800. doi: 10.1038/35001622 10693811.
13. Dobbin MM, Madabhushi R, Pan L, Chen Y, Kim D, Gao J, et al. SIRT1 collaborates with ATM and HDAC1 to maintain genomic stability in neurons. Nature neuroscience. 2013;16(8):1008–15. doi: 10.1038/nn.3460 23852118.
14. Hebner C, Beglin M, Laimins LA. Human papillomavirus E6 proteins mediate resistance to interferon-induced growth arrest through inhibition of p53 acetylation. Journal of virology. 2007;81(23):12740–7. doi: 10.1128/JVI.00987-07 17898049; PubMed Central PMCID: PMC2169108.
15. Quinlan EJ, Culleton SP, Wu SY, Chiang CM, Androphy EJ. Acetylation of conserved lysines in bovine papillomavirus E2 by p300. Journal of virology. 2013;87(3):1497–507. doi: 10.1128/JVI.02771-12 23152516; PubMed Central PMCID: PMC3554136.
16. Longworth MS, Wilson R, Laimins LA. HPV31 E7 facilitates replication by activating E2F2 transcription through its interaction with HDACs. The EMBO journal. 2005;24(10):1821–30. doi: 10.1038/sj.emboj.7600651 15861133; PubMed Central PMCID: PMC1142589.
17. Allison SJ, Jiang M, Milner J. Oncogenic viral protein HPV E7 up-regulates the SIRT1 longevity protein in human cervical cancer cells. Aging (Albany NY). 2009;1(3):316–27. 20157519; PubMed Central PMCID: PMCPMC2806013.
18. Wilson R, Laimins LA. Differentiation of HPV-containing cells using organotypic "raft" culture or methylcellulose. Methods in molecular medicine. 2005;119:157–69. doi: 10.1385/1-59259-982-6:157 16350403.
19. Stoler MH, Wolinsky SM, Whitbeck A, Broker TR, Chow LT. Differentiation-linked human papillomavirus types 6 and 11 transcription in genital condylomata revealed by in situ hybridization with message-specific RNA probes. Virology. 1989;172(1):331–40. 2549716.
20. Hummel M, Hudson JB, Laimins LA. Differentiation-induced and constitutive transcription of human papillomavirus type 31b in cell lines containing viral episomes. Journal of virology. 1992;66(10):6070–80. 1326657; PubMed Central PMCID: PMC241484.
21. Moody CA, Fradet-Turcotte A, Archambault J, Laimins LA. Human papillomaviruses activate caspases upon epithelial differentiation to induce viral genome amplification. Proceedings of the National Academy of Sciences of the United States of America. 2007;104(49):19541–6. doi: 10.1073/pnas.0707947104 18048335; PubMed Central PMCID: PMC2148325.
22. Hennings H, Michael D, Cheng C, Steinert P, Holbrook K, Yuspa SH. Calcium regulation of growth and differentiation of mouse epidermal cells in culture. Cell. 1980;19(1):245–54. 6153576.
23. Longworth MS, Laimins LA. The binding of histone deacetylases and the integrity of zinc finger-like motifs of the E7 protein are essential for the life cycle of human papillomavirus type 31. Journal of virology. 2004;78(7):3533–41. 15016876; PubMed Central PMCID: PMC371089.
24. Saunders LR, Verdin E. Sirtuins: critical regulators at the crossroads between cancer and aging. Oncogene. 2007;26(37):5489–504. doi: 10.1038/sj.onc.1210616 17694089.
25. Peck B, Chen CY, Ho KK, Di Fruscia P, Myatt SS, Coombes RC, et al. SIRT inhibitors induce cell death and p53 acetylation through targeting both SIRT1 and SIRT2. Mol Cancer Ther. 2010;9(4):844–55. doi: 10.1158/1535-7163.MCT-09-0971 20371709.
26. Ozbun MA, Meyers C. Two novel promoters in the upstream regulatory region of human papillomavirus type 31b are negatively regulated by epithelial differentiation. Journal of virology. 1999;73(4):3505–10. 10074210; PubMed Central PMCID: PMC104120.
27. Ozbun MA, Meyers C. Temporal usage of multiple promoters during the life cycle of human papillomavirus type 31b. Journal of virology. 1998;72(4):2715–22. 9525589; PubMed Central PMCID: PMC109714.
28. McCance DJ, Kopan R, Fuchs E, Laimins LA. Human papillomavirus type 16 alters human epithelial cell differentiation in vitro. Proceedings of the National Academy of Sciences of the United States of America. 1988;85(19):7169–73. 2459699; PubMed Central PMCID: PMC282145.
29. Wooldridge TR, Laimins LA. Regulation of human papillomavirus type 31 gene expression during the differentiation-dependent life cycle through histone modifications and transcription factor binding. Virology. 2008;374(2):371–80. doi: 10.1016/j.virol.2007.12.011 18237759; PubMed Central PMCID: PMC2410142.
30. del Mar Pena LM, Laimins LA. Differentiation-dependent chromatin rearrangement coincides with activation of human papillomavirus type 31 late gene expression. Journal of virology. 2001;75(20):10005–13. doi: 10.1128/JVI.75.20.10005–10013.2001 11559836; PubMed Central PMCID: PMC114575.
31. Vaquero A, Sternglanz R, Reinberg D. NAD+-dependent deacetylation of H4 lysine 16 by class III HDACs. Oncogene. 2007;26(37):5505–20. doi: 10.1038/sj.onc.1210617 17694090.
32. Wang RH, Sengupta K, Li C, Kim HS, Cao L, Xiao C, et al. Impaired DNA damage response, genome instability, and tumorigenesis in SIRT1 mutant mice. Cancer Cell. 2008;14(4):312–23. doi: 10.1016/j.ccr.2008.09.001 18835033; PubMed Central PMCID: PMCPMC2643030.
33. Anacker DC, Gautam D, Gillespie KA, Chappell WH, Moody CA. Productive Replication of Human Papillomavirus 31 Requires DNA Repair Factor Nbs1. Journal of virology. 2014;88(15):8528–44. doi: 10.1128/JVI.00517-14 24850735.
34. Cao C, Lu S, Kivlin R, Wallin B, Card E, Bagdasarian A, et al. SIRT1 confers protection against UVB- and H2O2-induced cell death via modulation of p53 and JNK in cultured skin keratinocytes. Journal of cellular and molecular medicine. 2009;13(9B):3632–43. doi: 10.1111/j.1582-4934.2008.00453.x 18681908.
35. Martin SG, Laroche T, Suka N, Grunstein M, Gasser SM. Relocalization of telomeric Ku and SIR proteins in response to DNA strand breaks in yeast. Cell. 1999;97(5):621–33. 10367891.
36. Lorenz LD, Rivera Cardona J, Lambert PF. Inactivation of p53 rescues the maintenance of high risk HPV DNA genomes deficient in expression of E6. PLoS pathogens. 2013;9(10):e1003717. doi: 10.1371/journal.ppat.1003717 24204267; PubMed Central PMCID: PMC3812038.
37. Gillespie KA, Mehta KP, Laimins LA, Moody CA. Human papillomaviruses recruit cellular DNA repair and homologous recombination factors to viral replication centers. Journal of virology. 2012;86(17):9520–6. doi: 10.1128/JVI.00247-12 22740399; PubMed Central PMCID: PMC3416172.
38. Tsuzuki T, Fujii Y, Sakumi K, Tominaga Y, Nakao K, Sekiguchi M, et al. Targeted disruption of the Rad51 gene leads to lethality in embryonic mice. Proceedings of the National Academy of Sciences of the United States of America. 1996;93(13):6236–40. 8692798; PubMed Central PMCID: PMC39005.
39. Tamburini BA, Tyler JK. Localized histone acetylation and deacetylation triggered by the homologous recombination pathway of double-strand DNA repair. Molecular and cellular biology. 2005;25(12):4903–13. doi: 10.1128/MCB.25.12.4903–4913.2005 15923609; PubMed Central PMCID: PMC1140608.
40. Hsiao KY, Mizzen CA. Histone H4 deacetylation facilitates 53BP1 DNA damage signaling and double-strand break repair. Journal of molecular cell biology. 2013;5(3):157–65. doi: 10.1093/jmcb/mjs066 23329852.
41. Frattini MG, Lim HB, Laimins LA. In vitro synthesis of oncogenic human papillomaviruses requires episomal genomes for differentiation-dependent late expression. Proceedings of the National Academy of Sciences of the United States of America. 1996;93(7):3062–7. 8610168; PubMed Central PMCID: PMC39761.
42. De Geest K, Turyk ME, Hosken MI, Hudson JB, Laimins LA, Wilbanks GD. Growth and differentiation of human papillomavirus type 31b positive human cervical cell lines. Gynecologic oncology. 1993;49(3):303–10. doi: 10.1006/gyno.1993.1131 8390960.
43. Sancak Y, Peterson TR, Shaul YD, Lindquist RA, Thoreen CC, Bar-Peled L, et al. The Rag GTPases bind raptor and mediate amino acid signaling to mTORC1. Science. 2008;320(5882):1496–501. doi: 10.1126/science.1157535 18497260; PubMed Central PMCID: PMC2475333.
44. Blander G, Bhimavarapu A, Mammone T, Maes D, Elliston K, Reich C, et al. SIRT1 promotes differentiation of normal human keratinocytes. The Journal of investigative dermatology. 2009;129(1):41–9. doi: 10.1038/jid.2008.179 18563176; PubMed Central PMCID: PMC3526938.
45. Fehrmann F, Klumpp DJ, Laimins LA. Human papillomavirus type 31 E5 protein supports cell cycle progression and activates late viral functions upon epithelial differentiation. Journal of virology. 2003;77(5):2819–31. 12584305; PubMed Central PMCID: PMC149771.
46. Wilson R, Fehrmann F, Laimins LA. Role of the E1—E4 protein in the differentiation-dependent life cycle of human papillomavirus type 31. Journal of virology. 2005;79(11):6732–40. doi: 10.1128/JVI.79.11.6732–6740.2005 15890911; PubMed Central PMCID: PMC1112140.
47. Mehta K, Gunasekharan V, Satsuka A, Laimins LA. Human papillomaviruses activate and recruit SMC1 cohesin proteins for the differentiation-dependent life cycle through association with CTCF insulators. PLoS pathogens. 2015;11(4):e1004763. doi: 10.1371/journal.ppat.1004763 25875106; PubMed Central PMCID: PMC4395367.
48. Shechter D, Dormann HL, Allis CD, Hake SB. Extraction, purification and analysis of histones. Nature protocols. 2007;2(6):1445–57. doi: 10.1038/nprot.2007.202 17545981.
49. Wong PP, Pickard A, McCance DJ. p300 alters keratinocyte cell growth and differentiation through regulation of p21(Waf1/CIP1). PloS one. 2010;5(1):e8369. doi: 10.1371/journal.pone.0008369 20084294; PubMed Central PMCID: PMC2805707.
Štítky
Hygiena a epidemiológia Infekčné lekárstvo LaboratóriumČlánok vyšiel v časopise
PLOS Pathogens
2015 Číslo 9
- Parazitičtí červi v terapii Crohnovy choroby a dalších zánětlivých autoimunitních onemocnění
- Očkování proti virové hemoragické horečce Ebola experimentální vakcínou rVSVDG-ZEBOV-GP
- Koronavirus hýbe světem: Víte jak se chránit a jak postupovat v případě podezření?
Najčítanejšie v tomto čísle
- Fiat Luc: Bioluminescence Imaging Reveals In Vivo Viral Replication Dynamics
- Knocking on Closed Doors: Host Interferons Dynamically Regulate Blood-Brain Barrier Function during Viral Infections of the Central Nervous System
- Epicellular Apicomplexans: Parasites “On the Way In”
- Global Analysis of Mouse Polyomavirus Infection Reveals Dynamic Regulation of Viral and Host Gene Expression and Promiscuous Viral RNA Editing