Viral Protein Inhibits RISC Activity by Argonaute Binding through Conserved WG/GW Motifs
RNA silencing is an evolutionarily conserved sequence-specific gene-inactivation system that also functions as an antiviral mechanism in higher plants and insects. To overcome antiviral RNA silencing, viruses express silencing-suppressor proteins. These viral proteins can target one or more key points in the silencing machinery. Here we show that in Sweet potato mild mottle virus (SPMMV, type member of the Ipomovirus genus, family Potyviridae), the role of silencing suppressor is played by the P1 protein (the largest serine protease among all known potyvirids) despite the presence in its genome of an HC-Pro protein, which, in potyviruses, acts as the suppressor. Using in vivo studies we have demonstrated that SPMMV P1 inhibits si/miRNA-programmed RISC activity. Inhibition of RISC activity occurs by binding P1 to mature high molecular weight RISC, as we have shown by immunoprecipitation. Our results revealed that P1 targets Argonaute1 (AGO1), the catalytic unit of RISC, and that suppressor/binding activities are localized at the N-terminal half of P1. In this region three WG/GW motifs were found resembling the AGO-binding linear peptide motif conserved in metazoans and plants. Site-directed mutagenesis proved that these three motifs are absolutely required for both binding and suppression of AGO1 function. In contrast to other viral silencing suppressors analyzed so far P1 inhibits both existing and de novo formed AGO1 containing RISC complexes. Thus P1 represents a novel RNA silencing suppressor mechanism. The discovery of the molecular bases of P1 mediated silencing suppression may help to get better insight into the function and assembly of the poorly explored multiprotein containing RISC.
Vyšlo v časopise:
Viral Protein Inhibits RISC Activity by Argonaute Binding through Conserved WG/GW Motifs. PLoS Pathog 6(7): e32767. doi:10.1371/journal.ppat.1000996
Kategorie:
Research Article
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.ppat.1000996
Souhrn
RNA silencing is an evolutionarily conserved sequence-specific gene-inactivation system that also functions as an antiviral mechanism in higher plants and insects. To overcome antiviral RNA silencing, viruses express silencing-suppressor proteins. These viral proteins can target one or more key points in the silencing machinery. Here we show that in Sweet potato mild mottle virus (SPMMV, type member of the Ipomovirus genus, family Potyviridae), the role of silencing suppressor is played by the P1 protein (the largest serine protease among all known potyvirids) despite the presence in its genome of an HC-Pro protein, which, in potyviruses, acts as the suppressor. Using in vivo studies we have demonstrated that SPMMV P1 inhibits si/miRNA-programmed RISC activity. Inhibition of RISC activity occurs by binding P1 to mature high molecular weight RISC, as we have shown by immunoprecipitation. Our results revealed that P1 targets Argonaute1 (AGO1), the catalytic unit of RISC, and that suppressor/binding activities are localized at the N-terminal half of P1. In this region three WG/GW motifs were found resembling the AGO-binding linear peptide motif conserved in metazoans and plants. Site-directed mutagenesis proved that these three motifs are absolutely required for both binding and suppression of AGO1 function. In contrast to other viral silencing suppressors analyzed so far P1 inhibits both existing and de novo formed AGO1 containing RISC complexes. Thus P1 represents a novel RNA silencing suppressor mechanism. The discovery of the molecular bases of P1 mediated silencing suppression may help to get better insight into the function and assembly of the poorly explored multiprotein containing RISC.
Zdroje
1. BaulcombeD
2004 RNA silencing in plants. Nature 431 356 363
2. DingSW
VoinnetO
2007 Antiviral Immunity Directed by Small RNAs. Cell 130 413 426
3. BoucheN
LauresserguesD
GasciolliV
VaucheretH
2006 An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs. Embo J 25 3347 3356
4. DelerisA
Gallego-BartolomeJ
BaoJ
KasschauKD
CarringtonJC
2006 Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense. Science 313 68 71
5. MoissiardG
VoinnetO
2006 RNA silencing of host transcripts by cauliflower mosaic virus requires coordinated action of the four Arabidopsis Dicer-like proteins. Proc Natl Acad Sci U S A 103 19593 19598
6. VaucheretH
2008 Plant ARGONAUTES. Trends Plant Sci 13 350 358
7. HutvagnerG
SimardMJ
2008 Argonaute proteins: key players in RNA silencing. Nat Rev Mol Cell Biol 9 22 32
8. MorelJB
GodonC
MourrainP
BeclinC
BoutetS
2002 Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance. Plant Cell 14 629 639
9. QuF
YeX
MorrisTJ
2008 Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1. Proc Natl Acad Sci U S A 105 14732 14737
10. ZhangX
YuanYR
PeiY
LinSS
TuschlT
2006 Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense. Genes Dev 20 3255 3268
11. BaumbergerN
BaulcombeDC
2005 Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs. Proc Natl Acad Sci U S A 102 11928 11933
12. BrodersenP
Sakvarelidze-AchardL
Bruun-RasmussenM
DunoyerP
YamamotoYY
2008 Widespread translational inhibition by plant miRNAs and siRNAs. Science 320 1185 1190
13. QiX
BaoFS
XieZ
2009 Small RNA deep sequencing reveals role for Arabidopsis thaliana RNA-dependent RNA polymerases in viral siRNA biogenesis. PLoS ONE 4 e4971
14. QuF
YeX
HouG
SatoS
ClementeTE
2005 RDR6 has a broad-spectrum but temperature-dependent antiviral defense role in Nicotiana benthamiana. J Virol 79 15209 15217
15. SchwachF
VaistijFE
JonesL
BaulcombeDC
2005 An RNA-dependent RNA polymerase prevents meristem invasion by potato virus X and is required for the activity but not the production of a systemic silencing signal. Plant Physiol 138 1842 1852
16. VoinnetO
2008 Use, tolerance and avoidance of amplified RNA silencing by plants. Trends Plant Sci 13 317 328
17. DonaireL
WangY
Gonzalez-IbeasD
MayerKF
ArandaMA
2009 Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes. Virology
18. WangXB
WuQ
ItoT
CilloF
LiWX
RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana. Proc Natl Acad Sci U S A 107 484 489
19. BurgyanJ
2008 Role of Silencing Suppressor Proteins. Methods Mol Biol 451 69 79
20. CsorbaT
PantaleoV
BurgyanJ
2009 RNA silencing: an antiviral mechanism. Adv Virus Res 75 35 71
21. ChapmanEJ
ProkhnevskyAI
GopinathK
DoljaVV
CarringtonJC
2004 Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step. Genes Dev 18 1179 1186
22. LakatosL
CsorbaT
PantaleoV
ChapmanEJ
CarringtonJC
2006 Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors. Embo J 25 2768 2780
23. HaasG
AzevedoJ
MoissiardG
GeldreichA
HimberC
2008 Nuclear import of CaMV P6 is required for infection and suppression of the RNA silencing factor DRB4. EMBO J 27 2102 2112
24. PazhouhandehM
DieterleM
MarroccoK
LechnerE
BerryB
2006 F-box-like domain in the polerovirus protein P0 is required for silencing suppressor function. Proc Natl Acad Sci U S A 103 1994 1999
25. BaumbergerN
TsaiCH
LieM
HaveckerE
BaulcombeDC
2007 The Polerovirus silencing suppressor P0 targets ARGONAUTE proteins for degradation. Curr Biol 17 1609 1614
26. Urcuqui-InchimaS
HaenniAL
BernardiF
2001 Potyvirus proteins: a wealth of functions. Virus Res 74 157 175
27. AnandalakshmiR
PrussGJ
GeX
MaratheR
MalloryAC
1998 A viral suppressor of gene silencing in plants. Proc Natl Acad Sci U S A 95 13079 13084
28. BrignetiG
VoinnetO
LiWX
JiLH
DingSW
1998 Viral pathogenicity determinants are suppressors of transgene silencing in Nicotiana benthamiana. Embo J 17 6739 6746
29. KasschauKD
CarringtonJC
1998 A counterdefensive strategy of plant viruses: suppression of posttranscriptional gene silencing. Cell 95 461 470
30. ValliA
Martin-HernandezAM
Lopez-MoyaJJ
GarciaJA
2006 RNA silencing suppression by a second copy of the P1 serine protease of Cucumber vein yellowing ipomovirus, a member of the family Potyviridae that lacks the cysteine protease HCPro. J Virol 80 10055 10063
31. LiW
HilfME
WebbSE
BakerCA
AdkinsS
2008 Presence of P1b and absence of HC-Pro in Squash vein yellowing virus suggests a general feature of the genus Ipomovirus in the family Potyviridae. Virus Res 135 213 219
32. ValliA
DujovnyG
GarciaJA
2008 Protease activity, self interaction, and small interfering RNA binding of the silencing suppressor p1b from cucumber vein yellowing ipomovirus. J Virol 82 974 986
33. ColinetD
KummertJ
LepoivreP
1998 The nucleotide sequence and genome organization of the whitefly transmitted sweetpotato mild mottle virus: a close relationship with members of the family Potyviridae. Virus Res 53 187 196
34. TillS
LejeuneE
ThermannR
BortfeldM
HothornM
2007 A conserved motif in Argonaute-interacting proteins mediates functional interactions through the Argonaute PIWI domain. Nat Struct Mol Biol 14 897 903
35. TillS
LadurnerAG
2007 RNA Pol IV plays catch with Argonaute 4. Cell 131 643 645
36. AdamsMJ
AntoniwJF
FauquetCM
2005 Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol 150 459 479
37. ShibolethYM
HaronskyE
LeibmanD
AraziT
WasseneggerM
2007 The conserved FRNK box in HC-Pro, a plant viral suppressor of gene silencing, is required for small RNA binding and mediates symptom development. J Virol 81 13135 13148
38. LichnerZ
SilhavyD
BurgyanJ
2003 Double-stranded RNA-binding proteins could suppress RNA interference-mediated antiviral defences. J Gen Virol 84 975 980
39. HuangY
JiL
HuangQ
VassylyevDG
ChenX
2009 Structural insights into mechanisms of the small RNA methyltransferase HEN1. Nature 461 823 827
40. RamachandranV
ChenX
2008 Small RNA metabolism in Arabidopsis. Trends Plant Sci 13 368 374
41. LozsaR
CsorbaT
LakatosL
BurgyanJ
2008 Inhibition of 3′ modification of small RNAs in virus-infected plants require spatial and temporal co-expression of small RNAs and viral silencing-suppressor proteins. Nucleic Acids Res 36 4099 4107
42. MatrangaC
TomariY
ShinC
BartelDP
ZamorePD
2005 Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes. Cell 123 607 620
43. PantaleoV
SzittyaG
BurgyanJ
2007 Molecular Bases of Viral RNA Targeting by Viral Small Interfering RNA-Programmed RISC. J Virol 81 3797 3806
44. ParizottoEA
DunoyerP
RahmN
HimberC
VoinnetO
2004 In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA. Genes Dev 18 2237 2242
45. SzittyaG
MolnarA
SilhavyD
HornyikC
BurgyanJ
2002 Short defective interfering RNAs of tombusviruses are not targeted but trigger post-transcriptional gene silencing against their helper virus. Plant Cell 14 359 372
46. SilhavyD
MolnarA
LucioliA
SzittyaG
HornyikC
2002 A viral protein suppresses RNA silencing and binds silencing-generated, 21- to 25-nucleotide double-stranded RNAs. Embo J 21 3070 3080
47. HockJ
WeinmannL
EnderC
RudelS
KremmerE
2007 Proteomic and functional analysis of Argonaute-containing mRNA-protein complexes in human cells. EMBO Rep 8 1052 1060
48. PhamJW
PellinoJL
LeeYS
CarthewRW
SontheimerEJ
2004 A Dicer-2-dependent 80s complex cleaves targeted mRNAs during RNAi in Drosophila. Cell 117 83 94
49. CsorbaT
LozsaR
HutvagnerG
BurgyanJ
Polerovirus protein P0 prevents the assembly of small RNA-containing RISC complexes and leads to degradation of ARGONAUTE1. Plant J
50. OmarovRT
CiomperlikJJ
ScholthofHB
2007 RNAi-associated ssRNA-specific ribonucleases in Tombusvirus P19 mutant-infected plants and evidence for a discrete siRNA-containing effector complex. Proc Natl Acad Sci U S A 104 1714 1719
51. El-ShamiM
PontierD
LahmyS
BraunL
PicartC
2007 Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components. Genes Dev 21 2539 2544
52. QiY
DenliAM
HannonGJ
2005 Biochemical specialization within Arabidopsis RNA silencing pathways. Mol Cell 19 421 428
53. BortolamiolD
PazhouhandehM
MarroccoK
GenschikP
Ziegler-GraffV
2007 The Polerovirus F box protein P0 targets ARGONAUTE1 to suppress RNA silencing. Curr Biol 17 1615 1621
54. JanssenD
MartinG
VelascoL
GomezP
SegundoE
2005 Absence of a coding region for the helper component-proteinase in the genome of cucumber vein yellowing virus, a whitefly-transmitted member of the Potyviridae. Arch Virol 150 1439 1447
55. MbanzibwaDR
TianY
MukasaSB
ValkonenJP
2009 Cassava brown streak virus (Potyviridae) encodes a putative Maf/HAM1 pyrophosphatase implicated in reduction of mutations and a P1 proteinase that suppresses RNA silencing but contains no HC-Pro. J Virol 83 6934 6940
56. ChenHY
YangJ
LinC
YuanYA
2008 Structural basis for RNA-silencing suppression by Tomato aspermy virus protein 2b. EMBO Rep 9 754 760
57. Diaz-PendonJA
LiF
LiWX
DingSW
2007 Suppression of antiviral silencing by cucumber mosaic virus 2b protein in Arabidopsis is associated with drastically reduced accumulation of three classes of viral small interfering RNAs. Plant Cell 19 2053 2063
58. KarlowskiWM
ZielezinskiA
CarrereJ
PontierD
LagrangeT
Genome-wide computational identification of WG/GW Argonaute-binding proteins in Arabidopsis. Nucleic Acids Res
59. Behm-AnsmantI
RehwinkelJ
DoerksT
StarkA
BorkP
2006 mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes. Genes Dev 20 1885 1898
60. EulalioA
HuntzingerE
IzaurraldeE
2008 GW182 interaction with Argonaute is essential for miRNA-mediated translational repression and mRNA decay. Nat Struct Mol Biol 15 346 353
61. LiuJ
RivasFV
WohlschlegelJ
YatesJR3rd
ParkerR
2005 A role for the P-body component GW182 in microRNA function. Nat Cell Biol 7 1261 1266
62. BuhlerM
VerdelA
MoazedD
2006 Tethering RITS to a nascent transcript initiates RNAi- and heterochromatin-dependent gene silencing. Cell 125 873 886
63. VerdelA
JiaS
GerberS
SugiyamaT
GygiS
2004 RNAi-mediated targeting of heterochromatin by the RITS complex. Science 303 672 676
64. Bies-EtheveN
PontierD
LahmyS
PicartC
VegaD
2009 RNA-directed DNA methylation requires an AGO4-interacting member of the SPT5 elongation factor family. EMBO Rep 10 649 654
65. HeXJ
HsuYF
ZhuS
WierzbickiAT
PontesO
2009 An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein. Cell 137 498 508
66. LazzarettiD
TournierI
IzaurraldeE
2009 The C-terminal domains of human TNRC6A, TNRC6B, and TNRC6C silence bound transcripts independently of Argonaute proteins. RNA 15 1059 1066
67. BhattacharjeeS
ZamoraA
AzharMT
SaccoMA
LambertLH
2009 Virus resistance induced by NB-LRR proteins involves Argonaute4-dependent translational control. Plant J 58 940 951
68. ZamorePD
2004 Plant RNAi: How a viral silencing suppressor inactivates siRNA. Curr Biol 14 R198 200
69. CuellarWJ
KreuzeJF
RajamakiML
CruzadoKR
UntiverosM
2009 Elimination of antiviral defense by viral RNase III. Proc Natl Acad Sci U S A 106 10354 10358
70. KreuzeJF
SavenkovEI
CuellarW
LiX
ValkonenJP
2005 Viral class 1 RNase III involved in suppression of RNA silencing. J Virol 79 7227 7238
71. MukasaSB
RubaihayoPR
ValkonenJPT
2006 Interactions between a crinivirus, an ipomovirus and a potyvirus in coinfected sweetpotato plants. Plant Pathology 55 458 467
72. KerenyiZ
MeraiZ
HiripiL
BenkovicsA
GyulaP
2008 Inter-kingdom conservation of mechanism of nonsense-mediated mRNA decay. EMBO J 27 1585 1595
73. LakatosL
SzittyaG
SilhavyD
BurgyanJ
2004 Molecular mechanism of RNA silencing suppression mediated by p19 protein of tombusviruses. Embo J 23 876 884
74. ValocziA
HornyikC
VargaN
BurgyanJ
KauppinenS
2004 Sensitive and specific detection of microRNAs by northern blot analysis using LNA-modified oligonucleotide probes. Nucleic Acids Res 32 e175
75. ValliA
Lopez-MoyaJJ
GarciaJA
2007 Recombination and gene duplication in the evolutionary diversification of P1 proteins in the family Potyviridae. J Gen Virol 88 1016 1028
76. SakaiJ
MoriM
MorishitaT
TanakaM
HanadaK
1997 Complete nucleotide sequence and genome organization of sweet potato feathery mottle virus (S strain) genomic RNA: the large coding region of the P1 gene. Arch Virol 142 1553 1562
Štítky
Hygiena a epidemiológia Infekčné lekárstvo LaboratóriumČlánok vyšiel v časopise
PLOS Pathogens
2010 Číslo 7
- Očkování proti virové hemoragické horečce Ebola experimentální vakcínou rVSVDG-ZEBOV-GP
- Parazitičtí červi v terapii Crohnovy choroby a dalších zánětlivých autoimunitních onemocnění
- Koronavirus hýbe světem: Víte jak se chránit a jak postupovat v případě podezření?
Najčítanejšie v tomto čísle
- RNA Virus Replication Complexes
- Virus-Infection or 5′ppp-RNA Activates Antiviral Signal through Redistribution of IPS-1 Mediated by MFN1
- Functional Genetic Diversity among Complex Clinical Isolates: Delineation of Conserved Core and Lineage-Specific Transcriptomes during Intracellular Survival
- Extreme CD8 T Cell Requirements for Anti-Malarial Liver-Stage Immunity following Immunization with Radiation Attenuated Sporozoites