Generation of Neutralizing Antibodies and Divergence of SIVmac239 in Cynomolgus Macaques Following Short-Term Early Antiretroviral Therapy
Neutralizing antibodies (NAb) able to react to heterologous viruses are generated during natural HIV-1 infection in some individuals. Further knowledge is required in order to understand the factors contributing to induction of cross-reactive NAb responses. Here a well-established model of experimental pathogenic infection in cynomolgus macaques, which reproduces long-lasting HIV-1 infection, was used to study the NAb response as well as the viral evolution of the highly neutralization-resistant SIVmac239. Twelve animals were infected intravenously with SIVmac239. Antiretroviral therapy (ART) was initiated ten days post-inoculation and administered daily for four months. Viral load, CD4+ T-cell counts, total IgG levels, and breadth as well as strength of NAb in plasma were compared simultaneously over 14 months. In addition, envs from plasma samples were sequenced at three time points in all animals in order to assess viral evolution. We report here that seven of the 12 animals controlled viremia to below 104 copies/ml of plasma after discontinuation of ART and that this control was associated with a low level of evolutionary divergence. Macaques that controlled viral load developed broader NAb responses early on. Furthermore, escape mutations, such as V67M and R751G, were identified in virus sequenced from all animals with uncontrolled viremia. Bayesian estimation of ancestral population genetic diversity (PGD) showed an increase in this value in non-controlling or transient-controlling animals during the first 5.5 months of infection, in contrast to virus-controlling animals. Similarly, non- or transient controllers displayed more positively-selected amino-acid substitutions. An early increase in PGD, resulting in the generation of positively-selected amino-acid substitutions, greater divergence and relative high viral load after ART withdrawal, may have contributed to the generation of potent NAb in several animals after SIVmac239 infection. However, early broad NAb responses correlated with relatively preserved CD4+ T-cell numbers, low viral load and limited viral divergence.
Vyšlo v časopise:
Generation of Neutralizing Antibodies and Divergence of SIVmac239 in Cynomolgus Macaques Following Short-Term Early Antiretroviral Therapy. PLoS Pathog 6(9): e32767. doi:10.1371/journal.ppat.1001084
Kategorie:
Research Article
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.ppat.1001084
Souhrn
Neutralizing antibodies (NAb) able to react to heterologous viruses are generated during natural HIV-1 infection in some individuals. Further knowledge is required in order to understand the factors contributing to induction of cross-reactive NAb responses. Here a well-established model of experimental pathogenic infection in cynomolgus macaques, which reproduces long-lasting HIV-1 infection, was used to study the NAb response as well as the viral evolution of the highly neutralization-resistant SIVmac239. Twelve animals were infected intravenously with SIVmac239. Antiretroviral therapy (ART) was initiated ten days post-inoculation and administered daily for four months. Viral load, CD4+ T-cell counts, total IgG levels, and breadth as well as strength of NAb in plasma were compared simultaneously over 14 months. In addition, envs from plasma samples were sequenced at three time points in all animals in order to assess viral evolution. We report here that seven of the 12 animals controlled viremia to below 104 copies/ml of plasma after discontinuation of ART and that this control was associated with a low level of evolutionary divergence. Macaques that controlled viral load developed broader NAb responses early on. Furthermore, escape mutations, such as V67M and R751G, were identified in virus sequenced from all animals with uncontrolled viremia. Bayesian estimation of ancestral population genetic diversity (PGD) showed an increase in this value in non-controlling or transient-controlling animals during the first 5.5 months of infection, in contrast to virus-controlling animals. Similarly, non- or transient controllers displayed more positively-selected amino-acid substitutions. An early increase in PGD, resulting in the generation of positively-selected amino-acid substitutions, greater divergence and relative high viral load after ART withdrawal, may have contributed to the generation of potent NAb in several animals after SIVmac239 infection. However, early broad NAb responses correlated with relatively preserved CD4+ T-cell numbers, low viral load and limited viral divergence.
Zdroje
1. AlbertJ
AbrahamssonB
NagyK
AureliusE
GainesH
1990 Rapid development of isolate-specific neutralizing antibodies after primary HIV-1 infection and consequent emergence of virus variants which resist neutralization by autologous sera. Aids 4 107 112
2. MoogC
FleuryHJ
PellegrinI
KirnA
AubertinAM
1997 Autologous and heterologous neutralizing antibody responses following initial seroconversion in human immunodeficiency virus type 1-infected individuals. J Virol 71 3734 3741
3. RichmanDD
WrinT
LittleSJ
PetropoulosCJ
2003 Rapid evolution of the neutralizing antibody response to HIV type 1 infection. Proc Natl Acad Sci U S A 100 4144 4149
4. WeiX
DeckerJM
WangS
HuiH
KappesJC
2003 Antibody neutralization and escape by HIV-1. Nature 422 307 312
5. MooreJP
CaoY
LeuJ
QinL
KorberB
1996 Inter- and intraclade neutralization of human immunodeficiency virus type 1: genetic clades do not correspond to neutralization serotypes but partially correspond to gp120 antigenic serotypes. J Virol 70 427 444
6. BunnikEM
PisasL
van NuenenAC
SchuitemakerH
2008 Autologous neutralizing humoral immunity and evolution of the viral envelope in the course of subtype B human immunodeficiency virus type 1 infection. J Virol 82 7932 7941
7. Doria-RoseNA
KleinRM
ManionMM
O'DellS
PhogatA
2009 Frequency and phenotype of human immunodeficiency virus envelope-specific B cells from patients with broadly cross-neutralizing antibodies. J Virol 83 188 199
8. SatherDN
ArmannJ
ChingLK
MavrantoniA
SellhornG
2009 Factors associated with the development of cross-reactive neutralizing antibodies during human immunodeficiency virus type 1 infection. J Virol 83 757 769
9. SimekMD
RidaW
PriddyFH
PungP
CarrowE
2009 Human immunodeficiency virus type 1 elite neutralizers: individuals with broad and potent neutralizing activity identified by using a high-throughput neutralization assay together with an analytical selection algorithm. J Virol 83 7337 7348
10. ZhangYJ
FracassoC
FioreJR
BjorndalA
AngaranoG
1997 Augmented serum neutralizing activity against primary human immunodeficiency virus type 1 (HIV-1) isolates in two groups of HIV-1-infected long-term nonprogressors. J Infect Dis 176 1180 1187
11. CaoY
QinL
ZhangL
SafritJ
HoDD
1995 Virologic and immunologic characterization of long-term survivors of human immunodeficiency virus type 1 infection. N Engl J Med 332 201 208
12. CeciliaD
KleebergerC
MunozA
GiorgiJV
Zolla-PaznerS
1999 A longitudinal study of neutralizing antibodies and disease progression in HIV-1-infected subjects. J Infect Dis 179 1365 1374
13. JollyPE
WeissHL
2000 Neutralization and enhancement of HIV-1 infection by sera from HIV-1 infected individuals who progress to disease at different rates. Virology 273 52 59
14. StamatatosL
MorrisL
BurtonDR
MascolaJR
2009 Neutralizing antibodies generated during natural HIV-1 infection: good news for an HIV-1 vaccine? Nat Med 15 866 870
15. HessellAJ
RakaszEG
TehraniDM
HuberM
WeisgrauKL
Broadly neutralizing monoclonal antibodies 2F5 and 4E10 directed against the human immunodeficiency virus type 1 gp41 membrane-proximal external region protect against mucosal challenge by simian-human immunodeficiency virus SHIVBa-L. J Virol 84 1302 1313
16. HessellAJ
PoignardP
HunterM
HangartnerL
TehraniDM
2009 Effective, low-titer antibody protection against low-dose repeated mucosal SHIV challenge in macaques. Nat Med 15 951 954
17. NishimuraY
IgarashiT
HaigwoodN
SadjadpourR
PlishkaRJ
2002 Determination of a statistically valid neutralization titer in plasma that confers protection against simian-human immunodeficiency virus challenge following passive transfer of high-titered neutralizing antibodies. J Virol 76 2123 2130
18. ParrenPW
MarxPA
HessellAJ
LuckayA
HarouseJ
2001 Antibody protects macaques against vaginal challenge with a pathogenic R5 simian/human immunodeficiency virus at serum levels giving complete neutralization in vitro. J Virol 75 8340 8347
19. BabaTW
LiskaV
Hofmann-LehmannR
VlasakJ
XuW
2000 Human neutralizing monoclonal antibodies of the IgG1 subtype protect against mucosal simian-human immunodeficiency virus infection. Nat Med 6 200 206
20. MascolaJR
StieglerG
VanCottTC
KatingerH
CarpenterCB
2000 Protection of macaques against vaginal transmission of a pathogenic HIV-1/SIV chimeric virus by passive infusion of neutralizing antibodies. Nat Med 6 207 210
21. MascolaJR
LewisMG
StieglerG
HarrisD
VanCottTC
1999 Protection of Macaques against pathogenic simian/human immunodeficiency virus 89.6PD by passive transfer of neutralizing antibodies. J Virol 73 4009 4018
22. ShibataR
IgarashiT
HaigwoodN
Buckler-WhiteA
OgertR
1999 Neutralizing antibody directed against the HIV-1 envelope glycoprotein can completely block HIV-1/SIV chimeric virus infections of macaque monkeys. Nat Med 5 204 210
23. PutkonenP
ThorstenssonR
GhavamzadehL
AlbertJ
HildK
1991 Prevention of HIV-2 and SIVsm infection by passive immunization in cynomolgus monkeys. Nature 352 436 438
24. SchererE
DouekD
McMichaelA
2008 25 years of HIV research on virology, virus restriction, immunopathogenesis, genes and vaccines. Clin Exp Immunol 154 6 14
25. LacknerAA
VeazeyRS
2007 Current concepts in AIDS pathogenesis: insights from the SIV/macaque model. Annu Rev Med 58 461 476
26. CoffinJM
1995 HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy. Science 267 483 489
27. KraftZ
DerbyNR
McCaffreyRA
NiecR
BlayWM
2007 Macaques infected with a CCR5-tropic simian/human immunodeficiency virus (SHIV) develop broadly reactive anti-HIV neutralizing antibodies. J Virol 81 6402 6411
28. CagigiA
NilssonA
De MilitoA
ChiodiF
2008 B cell immunopathology during HIV-1 infection: lessons to learn for HIV-1 vaccine design. Vaccine 26 3016 3025
29. YokoyamaS
1988 Molecular evolution of the Human and Simian immunideficienct viruses. Mol Biol Evol 5 645 649
30. ShankarappaR
MargolickJB
GangeSJ
RodrigoAG
UpchurchD
1999 Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection. J Virol 73 10489 10502
31. PowerJP
DavidsonF
O'RiordanJ
SimmondsP
YapPL
1995 Hepatitis C infection from anti-D immunoglobulin. Lancet 346 372 373
32. OgataN
AlterHJ
MillerRH
PurcellRH
1991 Nucleotide sequence and mutation rate of the H strain of hepatitis C virus. Proc Natl Acad Sci U S A 88 3392 3396
33. HarveyPH
PagelMD
1991 The Comparative Method in Evolutionary Biology Oxford Oxford University Press 239
34. SalemiM
VandammeAM
2003 The Phylogenetics Handbook-A practical approach to DNA and protein phylogeny Cambridge Cambridge University Press 406
35. LemeyP
Van DoorenS
VandammeAM
2005 Evolutionary dynamics of human retroviruses investigated through full-genome scanning. Mol Biol Evol 22 942 951
36. NowakMA
LloydAL
VasquezGM
WiltroutTA
WahlLM
1997 Viral dynamics of primary viremia and antiretroviral therapy in simian immunodeficiency virus infection. J Virol 71 7518 7525
37. OxeniusA
PriceDA
EasterbrookPJ
O'CallaghanCA
KelleherAD
2000 Early highly active antiretroviral therapy for acute HIV-1 infection preserves immune function of CD8+ and CD4+ T lymphocytes. Proc Natl Acad Sci U S A 97 3382 3387
38. KarlssonI
MalleretB
BrochardP
DelacheB
CalvoJ
2007 Dynamics of T-cell responses and memory T cells during primary simian immunodeficiency virus infection in cynomolgus macaques. J Virol 81 13456 13468
39. MattapallilJJ
DouekDC
HillB
NishimuraY
MartinM
2005 Massive infection and loss of memory CD4+ T cells in multiple tissues during acute SIV infection. Nature 434 1093 1097
40. SatoS
YusteE
LauerWA
ChangEH
MorganJS
2008 Potent antibody-mediated neutralization and evolution of antigenic escape variants of simian immunodeficiency virus strain SIVmac239 in vivo. J Virol 82 9739 9752
41. FultzPN
McClureHM
AndersonDC
SwensonRB
AnandR
1986 Isolation of a T-lymphotropic retrovirus from naturally infected sooty mangabey monkeys (Cercocebus atys). Proc Natl Acad Sci U S A 83 5286 5290
42. ZhangYJ
OhmanP
PutkonenP
AlbertJ
WaltherL
1993 Autologous neutralizing antibodies to SIVsm in cynomolgus monkeys correlate to prognosis. Virology 197 609 615
43. LaurenA
ThorstenssonR
FenyoEM
2006 Comparative studies on mucosal and intravenous transmission of simian immunodeficiency virus (SIVsm): the kinetics of evolution to neutralization resistance are related to progression rate of disease. J Gen Virol 87 595 606
44. BenjaminiY
HochbergY
1995 Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society Series B (Methodological) 57 289 300
45. RambautA
PosadaD
CrandallKA
HolmesEC
2004 The causes and consequences of HIV evolution. Nat Rev Genet 5 52 61
46. GaskillPJ
WatryDD
BurdoTH
FoxHS
2005 Development and characterization of positively selected brain-adapted SIV. Virol J 2 44
47. MoriK
RinglerDJ
KodamaT
DesrosiersRC
1992 Complex determinants of macrophage tropism in env of simian immunodeficiency virus. J Virol 66 2067 2075
48. WyattR
KwongPD
DesjardinsE
SweetRW
RobinsonJ
1998 The antigenic structure of the HIV gp120 envelope glycoprotein. Nature 393 705 711
49. RongR
LiB
LynchRM
HaalandRE
MurphyMK
2009 Escape from autologous neutralizing antibodies in acute/early subtype C HIV-1 infection requires multiple pathways. PLoS Pathog 5 1 17
50. KuntzenT
TimmJ
BericalA
Lewis-XimenezLL
JonesA
2007 Viral sequence evolution in acute hepatitis C virus infection. J Virol 81 11658 11668
51. ClementsJE
MontelaroRC
ZinkMC
AmedeeAM
MillerS
1995 Cross-protective immune responses induced in rhesus macaques by immunization with attenuated macrophage-tropic simian immunodeficiency virus. J Virol 69 2737 2744
52. ColeKS
RowlesJL
JagerskiBA
Murphey-CorbM
UnangstT
1997 Evolution of envelope-specific antibody responses in monkeys experimentally infected or immunized with simian immunodeficiency virus and its association with the development of protective immunity. J Virol 71 5069 5079
53. BinleyJM
LybargerEA
CrooksET
SeamanMS
GrayE
2008 Profiling the specificity of neutralizing antibodies in a large panel of plasmas from patients chronically infected with human immunodeficiency virus type 1 subtypes B and C. J Virol 82 11651 11668
54. BalzariniJ
NaesensL
SlachmuyldersJ
NiphuisH
RosenbergI
1991 9-(2-Phosphonylmethoxyethyl)adenine (PMEA) effectively inhibits retrovirus replication in vitro and simian immunodeficiency virus infection in rhesus monkeys. Aids 5 21 28
55. CorriganGE
HanssonEO
MornerA
BerryN
KallanderCF
2006 Reverse transcriptase viral load correlates with RNA in SIV/SHIV-infected macaques. AIDS Res Hum Retroviruses 22 917 923
56. ReevesJD
HibbittsS
SimmonsG
McKnightA
Azevedo-PereiraJM
1999 Primary human immunodeficiency virus type 2 (HIV-2) isolates infect CD4-negative cells via CCR5 and CXCR4: comparison with HIV-1 and simian immunodeficiency virus and relevance to cell tropism in vivo. J Virol 73 7795 7804
57. MornerA
BjorndalA
AlbertJ
KewalramaniVN
LittmanDR
1999 Primary human immunodeficiency virus type 2 (HIV-2) isolates, like HIV-1 isolates, frequently use CCR5 but show promiscuity in coreceptor usage. J Virol 73 2343 2349
58. ScarlattiG
LombardiV
PlebaniA
PrincipiN
VegniC
1991 Polymerase chain reaction, virus isolation and antigen assay in HIV-1-antibody-positive mothers and their children. Aids 5 1173 1178
59. DongM
ZhangPF
GriederF
LeeJ
KrishnamurthyG
2003 Induction of primary virus-cross-reactive human immunodeficiency virus type 1-neutralizing antibodies in small animals by using an alphavirus-derived in vivo expression system. J Virol 77 3119 3130
60. ShiY
BrandinE
VincicE
JanssonM
BlaxhultA
2005 Evolution of human immunodeficiency virus type 2 coreceptor usage, autologous neutralization, envelope sequence and glycosylation. J Gen Virol 86 3385 3396
61. ShiY
AlbertJ
FrancisG
HolmesH
FenyoEM
2002 A new cell line-based neutralization assay for primary HIV type 1 isolates. AIDS Res Hum Retroviruses 18 957 967
62. EdgarRC
2004 MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32 1792 1797
63. GuindonS
GascuelO
2003 A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52 696 704
64. PosadaD
CrandallKA
1998 MODELTEST: testing the model of DNA substitution. Bioinformatics 14 817 818
65. PosadaD
2003 Using MODELTEST and PAUP* to select a model of nucleotide substitution. Curr Protoc Bioinformatics Chapter 6 Unit 6 5
66. PosadaD
2006 ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online. Nucleic Acids Res 34 W700 703
67. PondSL
FrostSD
MuseSV
2005 HyPhy: hypothesis testing using phylogenies. Bioinformatics 21 676 679
68. ZwicklDJ
2006 Genetic algoritm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation. The University of Texas Austin
69. ShannonCE
1948 A matematical theory of communication. The Bell Syst Tech J 27 379 423
70. KingmanJFC
1982 The coalescent. Stochastic Processes and their Applications. Stoch Proc App 13 235 248
71. DrummondAJ
RambautA
2007 BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7 214
72. DrummondAJ
HoSY
PhillipsMJ
RambautA
2006 Relaxed phylogenetics and dating with confidence. PLoS Biol 4 0699 0710
73. ArnoldK
BordoliL
KoppJ
SchwedeT
2006 The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22 195 201
74. EmsleyP
CowtanK
2004 Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60 2126 2132
75. ZhangM
GaschenB
BlayW
FoleyB
HaigwoodN
2004 Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and influenza hemagglutinin. Glycobiology 14 1229 1246
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