HrpA, an RNA Helicase Involved in RNA Processing, Is Required for Mouse Infectivity and Tick Transmission of the Lyme Disease Spirochete
The Lyme disease spirochete Borrelia burgdorferi must differentially express genes and proteins in order to survive in and transit between its tick vector and vertebrate reservoir. The putative DEAH-box RNA helicase, HrpA, has been recently identified as an addition to the spirochete's global regulatory machinery; using proteomic methods, we demonstrated that HrpA modulates the expression of at least 180 proteins. Although most bacteria encode an HrpA helicase, RNA helicase activity has never been demonstrated for HrpAs and the literature contains little information on the contribution of this protein to bacterial physiology or pathogenicity. In this work, we report that B. burgdorferi HrpA has RNA-stimulated ATPase activity and RNA helicase activity and that this enzyme is essential for both mammalian infectivity by syringe inoculation and tick transmission. Reduced infectivity of strains carrying mutations in the ATPase and RNA binding motif mutants suggests that full virulence expression requires both ATPase and coupled helicase activity. Microarray profiling revealed changes in RNA levels of two-fold, or less in an hrpA mutant versus wild-type, suggesting that the enzyme functions largely or exclusively at the post-transcriptional level. In this regard, northern blot analysis of selected gene products highly regulated by HrpA (bb0603 [p66], bba74, bb0241 [glpK], bb0242 and bb0243 [glpA]) suggests a role for HrpA in the processing and translation of transcripts. In addition to being the first demonstration of RNA helicase activity for a bacterial HrpA, our data indicate that the post-transcriptional regulatory functions of this enzyme are essential for maintenance of the Lyme disease spirochete's enzootic cycle.
Vyšlo v časopise:
HrpA, an RNA Helicase Involved in RNA Processing, Is Required for Mouse Infectivity and Tick Transmission of the Lyme Disease Spirochete. PLoS Pathog 9(12): e32767. doi:10.1371/journal.ppat.1003841
Kategorie:
Research Article
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.ppat.1003841
Souhrn
The Lyme disease spirochete Borrelia burgdorferi must differentially express genes and proteins in order to survive in and transit between its tick vector and vertebrate reservoir. The putative DEAH-box RNA helicase, HrpA, has been recently identified as an addition to the spirochete's global regulatory machinery; using proteomic methods, we demonstrated that HrpA modulates the expression of at least 180 proteins. Although most bacteria encode an HrpA helicase, RNA helicase activity has never been demonstrated for HrpAs and the literature contains little information on the contribution of this protein to bacterial physiology or pathogenicity. In this work, we report that B. burgdorferi HrpA has RNA-stimulated ATPase activity and RNA helicase activity and that this enzyme is essential for both mammalian infectivity by syringe inoculation and tick transmission. Reduced infectivity of strains carrying mutations in the ATPase and RNA binding motif mutants suggests that full virulence expression requires both ATPase and coupled helicase activity. Microarray profiling revealed changes in RNA levels of two-fold, or less in an hrpA mutant versus wild-type, suggesting that the enzyme functions largely or exclusively at the post-transcriptional level. In this regard, northern blot analysis of selected gene products highly regulated by HrpA (bb0603 [p66], bba74, bb0241 [glpK], bb0242 and bb0243 [glpA]) suggests a role for HrpA in the processing and translation of transcripts. In addition to being the first demonstration of RNA helicase activity for a bacterial HrpA, our data indicate that the post-transcriptional regulatory functions of this enzyme are essential for maintenance of the Lyme disease spirochete's enzootic cycle.
Zdroje
1. RadolfJD, CaimanoMJ, StevensonB, HuLT (2012) Of ticks, mice and men: understanding the dual-host lifestyle of Lyme disease spirochaetes. Nat Rev Microbiol
2. StanekG, WormserGP, GrayJ, StrleF (2012) Lyme borreliosis. Lancet 379: 461–473.
3. Skare JT, Carroll JA, X.F Y, Samuels DS, Akins DR (2010) Gene regulation, transcriptomics and proteomics. In: Samuels DS, Radolf JD, editors. Borrelia: Molecular Biology, Host Interaction and Pathogenesis. Norfolk, UK: Caister Academic Press. pp. 67–101.
4. SamuelsDS (2011) Gene Regulation in Borrelia burgdorferi. Annu Rev Microbiol
5. CaimanoMJ, IyerR, EggersCH, GonzalezC, MortonEA, et al. (2007) Analysis of the RpoS regulon in Borrelia burgdorferi in response to mammalian host signals provides insight into RpoS function during the enzootic cycle. Mol Microbiol 65: 1193–1217.
6. FisherMA, GrimmD, HenionAK, EliasAF, StewartPE, et al. (2005) Borrelia burgdorferi sigma54 is required for mammalian infection and vector transmission but not for tick colonization. Proc Natl Acad Sci U S A 102: 5162–5167.
7. HubnerA, YangX, NolenDM, PopovaTG, CabelloFC, et al. (2001) Expression of Borrelia burgdorferi OspC and DbpA is controlled by a RpoN-RpoS regulatory pathway. Proc Natl Acad Sci U S A 98: 12724–12729.
8. YangXF, AlaniSM, NorgardMV (2003) The response regulator Rrp2 is essential for the expression of major membrane lipoproteins in Borrelia burgdorferi. Proc Natl Acad Sci U S A 100: 11001–11006.
9. BoardmanBK, HeM, OuyangZ, XuH, PangX, et al. (2008) Essential role of the response regulator Rrp2 in the infectious cycle of Borrelia burgdorferi. Infect Immun 76: 3844–3853.
10. BlevinsJS, XuH, HeM, NorgardMV, ReitzerL, et al. (2009) Rrp2, a sigma54-dependent transcriptional activator of Borrelia burgdorferi, activates rpoS in an enhancer-independent manner. J Bacteriol 191: 2902–2905.
11. GroshongAM, GibbonsNE, YangXF, BlevinsJS (2012) Rrp2, a prokaryotic enhancer-like binding protein, is essential for viability of Borrelia burgdorferi. J Bacteriol 194: 3336–3342.
12. HydeJA, ShawDK, Smith IiiR, TrzeciakowskiJP, SkareJT (2009) The BosR regulatory protein of Borrelia burgdorferi interfaces with the RpoS regulatory pathway and modulates both the oxidative stress response and pathogenic properties of the Lyme disease spirochete. Mol Microbiol 74: 1344–1355.
13. OuyangZ, DekaRK, NorgardMV (2011) BosR (bb0647) controls the RpoN-RpoS regulatory pathway and virulence expression in Borrelia burgdorferi by a novel DNA-binding mechanism. PLoS Pathog 7: e1001272.
14. GuellM, YusE, Lluch-SenarM, SerranoL (2011) Bacterial transcriptomics: what is beyond the RNA horiz-ome? Nat Rev Microbiol 9: 658–669.
15. GripenlandJ, NetterlingS, LohE, TiensuuT, Toledo-AranaA, et al. (2010) RNAs: regulators of bacterial virulence. Nat Rev Microbiol 8: 857–866.
16. PapenfortK, VogelJ (2010) Regulatory RNA in bacterial pathogens. Cell Host Microbe 8: 116–127.
17. CaronMP, LafontaineDA, MasseE (2010) Small RNA-mediated regulation at the level of transcript stability. RNA Biol 7: 140–144.
18. FrohlichKS, VogelJ (2009) Activation of gene expression by small RNA. Curr Opin Microbiol 12: 674–682.
19. LioliouE, RomillyC, RombyP, FechterP (2010) RNA-mediated regulation in bacteria: from natural to artificial systems. N Biotechnol 27: 222–235.
20. LybeckerMC, SamuelsDS (2007) Temperature-induced regulation of RpoS by a small RNA in Borrelia burgdorferi. Mol Microbiol 64: 1075–1089.
21. LybeckerMC, AbelCA, FeigAL, SamuelsDS (2010) Identification and function of the RNA chaperone Hfq in the Lyme disease spirochete Borrelia burgdorferi. Mol Microbiol 78: 622–635.
22. KarnaSL, SanjuanE, Esteve-GassentMD, MillerCL, MaruskovaM, et al. (2011) CsrA modulates levels of lipoproteins and key regulators of gene expression critical for pathogenic mechanisms of Borrelia burgdorferi. Infect Immun 79: 732–744.
23. SzeCW, LiC (2011) Inactivation of bb0184, which encodes carbon storage regulator A, represses the infectivity of Borrelia burgdorferi. Infect Immun 79: 1270–1279.
24. HardwickSW, LuisiBF (2012) Rarely at rest: RNA helicases and their busy contributions to RNA degradation, regulation and quality control. RNA Biol 10: 56–70.
25. MartinR, StraubAU, DoebeleC, BohnsackMT (2012) DExD/H-box RNA helicases in ribosome biogenesis. RNA Biol 9.
26. CordinO, BeggsJD (2013) RNA helicases in splicing. RNA Biol 10.
27. MarintchevA (2013) Roles of helicases in translation initiation: A mechanistic view. Biochim Biophys Acta 1829: 799–809.
28. KlostermeierD (2013) Lifelong companions: RNA helicases and their roles in RNA metabolism. RNA Biol 10.
29. KaberdinVR, BlasiU (2013) Bacterial helicases in post-transcriptional control. Biochim Biophys Acta 1829: 878–883.
30. SteimerL, KlostermeierD (2012) RNA helicases in infection and disease. RNA Biol 9: 751–771.
31. JankowskyE (2011) RNA helicases at work: binding and rearranging. Trends Biochem Sci 36: 19–29.
32. MoriyaH, KasaiH, IsonoK (1995) Cloning and characterization of the hrpA gene in the terC region of Escherichia coli that is highly similar to the DEAH family RNA helicase genes of Saccharomyces cerevisiae. Nucleic Acids Res 23: 595–598.
33. KooJT, ChoeJ, MoseleySL (2004) HrpA, a DEAH-box RNA helicase, is involved in mRNA processing of a fimbrial operon in Escherichia coli. Mol Microbiol 52: 1813–1826.
34. ButlandG, Peregrin-AlvarezJM, LiJ, YangW, YangX, et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433: 531–537.
35. Salman-DilgimenA, HardyP-O, DresserAR, ChaconasG (2011) HrpA, a DEAH-box RNA helicase, is a global regulator of gene expression in the Lyme disease spirochete. PLoS ONE 6: e22168.
36. LinderP, JankowskyE (2011) From unwinding to clamping - the DEAD box RNA helicase family. Nat Rev Mol Cell Biol 12: 505–516.
37. DethoffEA, ChughJ, MustoeAM, Al-HashimiHM (2012) Functional complexity and regulation through RNA dynamics. Nature 482: 322–330.
38. SchneiderS, SchwerB (2001) Functional domains of the yeast splicing factor Prp22p. J Biol Chem 276: 21184–21191.
39. LeeCG, HurwitzJ (1992) A new RNA helicase isolated from HeLa cells that catalytically translocates in the 3′ to 5′ direction. J Biol Chem 267: 4398–4407.
40. UtamaA, ShimizuH, MorikawaS, HasebeF, MoritaK, et al. (2000) Identification and characterization of the RNA helicase activity of Japanese encephalitis virus NS3 protein. FEBS Lett 465: 74–78.
41. SchneiderS, HotzHR, SchwerB (2002) Characterization of dominant-negative mutants of the DEAH-box splicing factors Prp22 and Prp16. J Biol Chem 277: 15452–15458.
42. KimDW, KimJ, GwackY, HanJH, ChoeJ (1997) Mutational analysis of the hepatitis C virus RNA helicase. J Virol 71: 9400–9409.
43. GrossCH, ShumanS (1995) Mutational analysis of vaccinia virus nucleoside triphosphate phosphohydrolase II, a DExH box RNA helicase. J Virol 69: 4727–4736.
44. SchneiderS, CampodonicoE, SchwerB (2004) Motifs IV and V in the DEAH box splicing factor Prp22 are important for RNA unwinding, and helicase-defective Prp22 mutants are suppressed by Prp8. J Biol Chem 279: 8617–8626.
45. NewtonCR, GrahamA, HeptinstallLE, PowellSJ, SummersC, et al. (1989) Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS). Nucleic Acids Res 17: 2503–2516.
46. KnightSW, KimmelBJ, EggersCH, SamuelsDS (2000) Disruption of the Borrelia burgdorferi gac gene, encoding the naturally synthesized GyrA C-terminal domain. J Bacteriol 182: 2048–2051.
47. PolicastroPF, SchwanTG (2003) Experimental infection of Ixodes scapularis larvae (Acari: Ixodidae) by immersion in low passage cultures of Borrelia burgdorferi. J Med Entomol 40: 364–370.
48. Dunham-EmsSM, CaimanoMJ, EggersCH, RadolfJD (2012) Borrelia burgdorferi requires the alternative sigma factor RpoS for dissemination within the vector during tick-to-mammal transmission. PLoS Pathog 8: e1002532.
49. TillyK, BestorA, JewettMW, RosaP (2007) Rapid clearance of Lyme disease spirochetes lacking OspC from skin. Infect Immun 75: 1517–1519.
50. GrimmD, TillyK, ByramR, StewartPE, KrumJG, et al. (2004) Outer-surface protein C of the Lyme disease spirochete: a protein induced in ticks for infection of mammals. Proc Natl Acad Sci U S A 101: 3142–3147.
51. KimDW, GwackY, HanJH, ChoeJ (1995) C-Terminal Domain of the Hepatitis C Virus NS3 Protein Contains an RNA Helicase Activity. Biochemical and Biophysical Research Communications 215: 160–166.
52. TanakaN, SchwerB (2005) Characterization of the NTPase, RNA-Binding, and RNA helicase activities of the DEAH-box splicing factor Prp22. Biochemistry 44: 9795–9803.
53. GwackY, YooH, SongI, ChoeJ, HanJH (1999) RNA-Stimulated ATPase and RNA helicase activities and RNA binding domain of hepatitis G virus nonstructural protein 3. J Virol 73: 2909–2915.
54. IostI, DreyfusM (2006) DEAD-box RNA helicases in Escherichia coli. Nucleic Acids Res 34: 4189–4197.
55. PerutkaJ, WangW, GoerlitzD, LambowitzAM (2004) Use of computer-designed group II introns to disrupt Escherichia coli DExH/D-box protein and DNA helicase genes. J Mol Biol 336: 421–439.
56. de la CruzJ, KresslerD, LinderP (1999) Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 24: 192–198.
57. RistowLC, MillerHE, PadmoreLJ, ChettriR, SalzmanN, et al. (2012) The β3-integrin ligand of Borrelia burgdorferi is critical for infection of mice but not ticks. Mol Microbiol 85: 1105–1118.
58. OuyangZ, BlevinsJS, NorgardMV (2008) Transcriptional interplay among the regulators Rrp2, RpoN and RpoS in Borrelia burgdorferi. Microbiology 154: 2641–2658.
59. ZhaoX, JainC (2011) DEAD-box proteins from Escherichia coli exhibit multiple ATP-independent activities. J Bacteriol 193: 2236–2241.
60. PappasCJ, IyerR, PetzkeMM, CaimanoMJ, RadolfJD, et al. (2011) Borrelia burgdorferi requires glycerol for maximum fitness during the tick phase of the enzootic cycle. PLoS Pathog 7: e1002102.
61. HeM, OuyangZ, TroxellB, XuH, MohA, et al. (2011) Cyclic di-GMP is essential for the survival of the lyme disease spirochete in ticks. PLoS Pathog 7: e1002133.
62. MoriartyTJ, ChaconasG (2009) Identification of the determinant conferring permissive substrate usage in the telomere resolvase, ResT. J Biol Chem 284: 23293–23301.
63. BankheadT, ChaconasG (2004) Mixing active site components: A recipe for the unique enzymatic activity of a telomere resolvase. Proc Natl Acad Sci USA 101: 13768–13773.
64. BradfordMM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248–254.
65. BarbourAG (1984) Isolation and cultivation of Lyme disease spirochetes. Yale J Biol Med 57: 521–525.
66. HardyP-O, ChaconasG (2013) The nucleotide excision repair system of Borrelia burgdorferi is the sole pathway involved in repair of DNA damage by uv light. J Bacteriol 195: 2220–2231.
67. SamuelsDS (1995) Electrotransformation of the spirochete Borrelia burgdorferi. Methods Mol Biol 47: 253–259.
68. BonoJL, EliasAF, KupkoJJIII, StevensonB, TillyK, et al. (2000) Efficient targeted mutagenesis in Borrelia burgdorferi. J Bacteriol 182: 2445–2452.
69. ChenQ, FischerJR, BenoitVM, DufourNP, YouderianP, et al. (2008) In vitro CpG methylation increases the transformation efficiency of Borrelia burgdorferi strains harboring the endogenous linear plasmid lp56. J Bacteriol 190: 7885–7891.
70. BunikisI, Kutschan-BunikisS, BondeM, BergströmS (2011) Multiplex PCR as a tool for validating plasmid content of Borrelia burgdorferi. Journal of Microbiological Methods 86: 243–247.
71. TokarzR, AndertonJM, KatonaLI, BenachJL (2004) Combined effects of blood and temperature shift on Borrelia burgdorferi gene expression as determined by whole genome DNA array. Infect Immun 72: 5419–5432.
72. KnightSW, SamuelsDS (1999) Natural synthesis of a DNA-binding protein from the C-terminal domain of DNA gyrase A in Borrelia burgdorferi. EMBO J 18: 4875–4881.
73. MulayVB, CaimanoMJ, IyerR, Dunham-EmsS, LiverisD, et al. (2009) Borrelia burgdorferi bba74 is expressed exclusively during tick feeding and is regulated by both arthropod- and mammalian host-specific signals. J Bacteriol 191: 2783–2794.
74. DresserAR, HardyP-O, ChaconasG (2009) Investigation of the role of DNA replication, recombination and repair genes in antigenic switching at the vlsE locus in Borrelia burgdorferi: an essential role for the RuvAB branch migrase. PLoS Pathogens 5: e1000680.
75. CaimanoMJ, KenedyMR, KairuT, DesrosiersDC, HarmanM, et al. (2011) The hybrid histidine kinase Hk1 is part of a two-component system that is essential for survival of Borrelia burgdorferi in feeding Ixodes scapularis ticks. Infect Immun 79: 3117–3130.
Štítky
Hygiena a epidemiológia Infekčné lekárstvo LaboratóriumČlánok vyšiel v časopise
PLOS Pathogens
2013 Číslo 12
- Parazitičtí červi v terapii Crohnovy choroby a dalších zánětlivých autoimunitních onemocnění
- Očkování proti virové hemoragické horečce Ebola experimentální vakcínou rVSVDG-ZEBOV-GP
- Koronavirus hýbe světem: Víte jak se chránit a jak postupovat v případě podezření?
Najčítanejšie v tomto čísle
- Influence of Mast Cells on Dengue Protective Immunity and Immune Pathology
- Myeloid Dendritic Cells Induce HIV-1 Latency in Non-proliferating CD4 T Cells
- Host Defense via Symbiosis in
- Coronaviruses as DNA Wannabes: A New Model for the Regulation of RNA Virus Replication Fidelity