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Identification, Replication, and Fine-Mapping of Loci Associated with Adult Height in Individuals of African Ancestry


Adult height is a classic polygenic trait of high heritability (h2 ∼0.8). More than 180 single nucleotide polymorphisms (SNPs), identified mostly in populations of European descent, are associated with height. These variants convey modest effects and explain ∼10% of the variance in height. Discovery efforts in other populations, while limited, have revealed loci for height not previously implicated in individuals of European ancestry. Here, we performed a meta-analysis of genome-wide association (GWA) results for adult height in 20,427 individuals of African ancestry with replication in up to 16,436 African Americans. We found two novel height loci (Xp22-rs12393627, P = 3.4×10−12 and 2p14-rs4315565, P = 1.2×10−8). As a group, height associations discovered in European-ancestry samples replicate in individuals of African ancestry (P = 1.7×10−4 for overall replication). Fine-mapping of the European height loci in African-ancestry individuals showed an enrichment of SNPs that are associated with expression of nearby genes when compared to the index European height SNPs (P<0.01). Our results highlight the utility of genetic studies in non-European populations to understand the etiology of complex human diseases and traits.


Vyšlo v časopise: Identification, Replication, and Fine-Mapping of Loci Associated with Adult Height in Individuals of African Ancestry. PLoS Genet 7(10): e32767. doi:10.1371/journal.pgen.1002298
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1002298

Souhrn

Adult height is a classic polygenic trait of high heritability (h2 ∼0.8). More than 180 single nucleotide polymorphisms (SNPs), identified mostly in populations of European descent, are associated with height. These variants convey modest effects and explain ∼10% of the variance in height. Discovery efforts in other populations, while limited, have revealed loci for height not previously implicated in individuals of European ancestry. Here, we performed a meta-analysis of genome-wide association (GWA) results for adult height in 20,427 individuals of African ancestry with replication in up to 16,436 African Americans. We found two novel height loci (Xp22-rs12393627, P = 3.4×10−12 and 2p14-rs4315565, P = 1.2×10−8). As a group, height associations discovered in European-ancestry samples replicate in individuals of African ancestry (P = 1.7×10−4 for overall replication). Fine-mapping of the European height loci in African-ancestry individuals showed an enrichment of SNPs that are associated with expression of nearby genes when compared to the index European height SNPs (P<0.01). Our results highlight the utility of genetic studies in non-European populations to understand the etiology of complex human diseases and traits.


Zdroje

1. PerolaMSammalistoSHiekkalinnaTMartinNGVisscherPM 2007 Combined genome scans for body stature in 6,602 European twins: evidence for common Caucasian loci. PLoS Genet 3 e97 doi:10.1371/journal.pgen.0030097

2. VisscherPMMedlandSEFerreiraMAMorleyKIZhuG 2006 Assumption-Free Estimation of Heritability from Genome-Wide Identity-by-Descent Sharing between Full Siblings. PLoS Genet 2 e41 doi:10.1371/journal.pgen.0020041

3. Lango AllenHEstradaKLettreGBerndtSIWeedonMN 2010 Hundreds of variants clustered in genomic loci and biological pathways affect human height. Nature 467 832 838

4. FisherRA 1918 The Correlation Between Relatives on the Supposition of Mendelian Inheritance. Transactions of the Royal Society of Edinburgh 52 399 433

5. ChoYSGoMJKimYJHeoJYOhJH 2009 A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits. Nat Genet 41 527 534

6. OkadaYKamataniYTakahashiAMatsudaKHosonoN 2010 A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci. Hum Mol Genet 19 2303 2312

7. KimJJLeeHIParkTKimKLeeJE 2010 Identification of 15 loci influencing height in a Korean population. J Hum Genet 55 27 31

8. KangSJChiangCWPalmerCDTayoBOLettreG 2010 Genome-wide association of anthropometric traits in African- and African-derived populations. Hum Mol Genet 19 2725 2738

9. ShrinerDAdeyemoAGerryNPHerbertAChenG 2009 Transferability and fine-mapping of genome-wide associated loci for adult height across human populations. PLoS ONE 4 e8398 doi:10.1371/journal.pone.0008398

10. LanktreeMBGuoYMurtazaMGlessnerJTBaileySD 2011 Meta-analysis of Dense Genecentric Association Studies Reveals Common and Uncommon Variants Associated with Height. Am J Hum Genet 88 6 18

11. YangJWeedonMNPurcellSLettreGEstradaK 2011 Genomic inflation factors under polygenic inheritance. Eur J Hum Genet

12. CasarinARusalenFDoimoMTrevissonECarraroS 2009 X-linked brachytelephalangic chondrodysplasia punctata: a simple trait that is not so simple. Am J Med Genet A 149A 2464 2468

13. WeedonMNLettreGFreathyRMLindgrenCMVoightBF 2007 A common variant of HMGA2 is associated with adult and childhood height in the general population. Nat Genet 39 1245 1250

14. SannaSJacksonAUNagarajaRWillerCJChenWM 2008 Common variants in the GDF5-UQCC region are associated with variation in human height. Nat Genet 40 198 203

15. PriceALPattersonNYuFCoxDRWaliszewskaA 2007 A genomewide admixture map for Latino populations. Am J Hum Genet 80 1024 1036

16. AltshulerDMGibbsRAPeltonenLDermitzakisESchaffnerSF 2010 Integrating common and rare genetic variation in diverse human populations. Nature 467 52 58

17. NeptuneERFrischmeyerPAArkingDEMyersLBuntonTE 2003 Dysregulation of TGF-beta activation contributes to pathogenesis in Marfan syndrome. Nat Genet 33 407 411

18. VoightBFKudaravalliSWenXPritchardJK 2006 A map of recent positive selection in the human genome. PLoS Biol 4 e72 doi:10.1371/journal.pbio.0040072

19. PriceALTandonAPattersonNBarnesKCRafaelsN 2009 Sensitive detection of chromosomal segments of distinct ancestry in admixed populations. PLoS Genet 5 e1000519 doi:10.1371/journal.pgen.1000519

20. LettreGPalmerCDYoungTEjebeKGAllayeeH 2011 Genome-Wide Association Study of Coronary Heart Disease and Its Risk Factors in 8,090 African Americans: The NHLBI CARe Project. PLoS Genet 7 e1001300 doi:10.1371/journal.pgen.1001300

21. GeBPokholokDKKwanTGrundbergEMorcosL 2009 Global patterns of cis variation in human cells revealed by high-density allelic expression analysis. Nat Genet 41 1216 1222

22. PruimRJWelchRPSannaSTeslovichTMChinesPS 2010 LocusZoom: regional visualization of genome-wide association scan results. Bioinformatics 26 2336 2337

Štítky
Genetika Reprodukčná medicína

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PLOS Genetics


2011 Číslo 10
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