Origin and Evolution of Sulfadoxine Resistant
The Thailand-Cambodia border is the epicenter for drug-resistant falciparum malaria. Previous studies have shown that chloroquine (CQ) and pyrimethamine resistance originated in this region and eventually spread to other Asian countries and Africa. However, there is a dearth in understanding the origin and evolution of dhps alleles associated with sulfadoxine resistance. The present study was designed to reveal the origin(s) of sulfadoxine resistance in Cambodia and its evolutionary relationship to African and South American dhps alleles. We sequenced 234 Cambodian Plasmodium falciparum isolates for the dhps codons S436A/F, A437G, K540E, A581G and A613S/T implicated in sulfadoxine resistance. We also genotyped 10 microsatellite loci around dhps to determine the genetic backgrounds of various alleles and compared them with the backgrounds of alleles prevalent in Africa and South America. In addition to previously known highly-resistant triple mutant dhps alleles SGEGA and AGEAA (codons 436, 437, 540, 581, 613 are sequentially indicated), a large proportion of the isolates (19.3%) contained a 540N mutation in association with 437G/581G yielding a previously unreported triple mutant allele, SGNGA. Microsatellite data strongly suggest the strength of selection was greater on triple mutant dhps alleles followed by the double and single mutants. We provide evidence for at least three independent origins for the double mutants, one each for the SGKGA, AGKAA and SGEAA alleles. Our data suggest that the triple mutant allele SGEGA and the novel allele SGNGA have common origin on the SGKGA background, whereas the AGEAA triple mutant was derived from AGKAA on multiple, albeit limited, genetic backgrounds. The SGEAA did not share haplotypes with any of the triple mutants. Comparative analysis of the microsatellite haplotypes flanking dhps alleles from Cambodia, Kenya, Cameroon and Venezuela revealed an independent origin of sulfadoxine resistant alleles in each of these regions.
Vyšlo v časopise:
Origin and Evolution of Sulfadoxine Resistant. PLoS Pathog 6(3): e32767. doi:10.1371/journal.ppat.1000830
Kategorie:
Research Article
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.ppat.1000830
Souhrn
The Thailand-Cambodia border is the epicenter for drug-resistant falciparum malaria. Previous studies have shown that chloroquine (CQ) and pyrimethamine resistance originated in this region and eventually spread to other Asian countries and Africa. However, there is a dearth in understanding the origin and evolution of dhps alleles associated with sulfadoxine resistance. The present study was designed to reveal the origin(s) of sulfadoxine resistance in Cambodia and its evolutionary relationship to African and South American dhps alleles. We sequenced 234 Cambodian Plasmodium falciparum isolates for the dhps codons S436A/F, A437G, K540E, A581G and A613S/T implicated in sulfadoxine resistance. We also genotyped 10 microsatellite loci around dhps to determine the genetic backgrounds of various alleles and compared them with the backgrounds of alleles prevalent in Africa and South America. In addition to previously known highly-resistant triple mutant dhps alleles SGEGA and AGEAA (codons 436, 437, 540, 581, 613 are sequentially indicated), a large proportion of the isolates (19.3%) contained a 540N mutation in association with 437G/581G yielding a previously unreported triple mutant allele, SGNGA. Microsatellite data strongly suggest the strength of selection was greater on triple mutant dhps alleles followed by the double and single mutants. We provide evidence for at least three independent origins for the double mutants, one each for the SGKGA, AGKAA and SGEAA alleles. Our data suggest that the triple mutant allele SGEGA and the novel allele SGNGA have common origin on the SGKGA background, whereas the AGEAA triple mutant was derived from AGKAA on multiple, albeit limited, genetic backgrounds. The SGEAA did not share haplotypes with any of the triple mutants. Comparative analysis of the microsatellite haplotypes flanking dhps alleles from Cambodia, Kenya, Cameroon and Venezuela revealed an independent origin of sulfadoxine resistant alleles in each of these regions.
Zdroje
1. EylesDE
HooCC
WarrenM
SandoshamAA
1963 Plasmodium falciparum resistant to chloroquine in Cambodia. Am J Trop Med Hyg 12 840 843
2. VerdragerJ
1986 Epidemiology of the emergence and spread of drug-resistant falciparum malaria in South-East Asia and Australasia. J Trop Med Hyg 89 277 289
3. HurwitzES
JohnsonD
CampbellCC
1981 Resistance of Plasmodium falciparum malaria to sulfadoxine-pyrimethamine (‘Fansidar’) in a refugee camp in Thailand. Lancet 1 1068 1070
4. WongsrichanalaiC
MeshnickSR
2008 Declining artesunate-mefloquine efficacy against falciparum malaria on the Cambodia-Thailand border. Emerg Infect Dis 14 716 719
5. WHO 2002 Development of South-Asia surveillance network for malaria drug resistance. Report on informal consultative meeting. World Health Organization, Geneva, Switzerland
6. HurlyMG
1959 Potentiation of pyrimethamine by sulphadiazine in human malaria. Trans R Soc Trop Med Hyg 53 412 413
7. ChulayJD
WatkinsWM
SixsmithDG
1984 Synergistic antimalarial activity of pyrimethamine and sulfadoxine against Plasmodium falciparum in vitro. Am J Trop Med Hyg 33 325 330
8. LaingAB
1970 Studies on the chemotherapy of malaria. I. The treatment of overt falciparum malaria with potentiating combinations of pyrimethamine and sulphormethoxine or dapsone in The Gambia. Trans R Soc Trop Med Hyg 64 562 568
9. WHO 2008 World Malaria Report 2008, World Health Organization, Geneva, Switzerland
10. BrownGM
1962 The biosynthesis of folic acid. II. Inhibition by sulfonamides. J Biol Chem 237 536 540
11. BrooksDR
WangP
ReadM
WatkinsWM
SimsPF
1994 Sequence variation of the hydroxymethyldihydropterin pyrophosphokinase: dihydropteroate synthase gene in lines of the human malaria parasite, Plasmodium falciparum, with differing resistance to sulfadoxine. Eur J Biochem 224 397 405
12. TrigliaT
CowmanAF
1994 Primary structure and expression of the dihydropteroate synthetase gene of Plasmodium falciparum. Proc Natl Acad Sci U S A 91 7149 7153
13. TrigliaT
MentingJG
WilsonC
CowmanAF
1997 Mutations in dihydropteroate synthase are responsible for sulfone and sulfonamide resistance in Plasmodium falciparum. Proc Natl Acad Sci U S A 94 13944 13949
14. WangP
ReadM
SimsPF
HydeJE
1997 Sulfadoxine resistance in the human malaria parasite Plasmodium falciparum is determined by mutations in dihydropteroate synthetase and an additional factor associated with folate utilization. Mol Microbiol 23 979 986
15. TrigliaT
WangP
SimsPF
HydeJE
CowmanAF
1998 Allelic exchange at the endogenous genomic locus in Plasmodium falciparum proves the role of dihydropteroate synthase in sulfadoxine-resistant malaria. EMBO J 17 3807 3815
16. KhimN
BouchierC
EkalaMT
IncardonaS
LimP
2005 Countrywide survey shows very high prevalence of Plasmodium falciparum multilocus resistance genotypes in Cambodia. Antimicrob Agents Chemother 49 3147 3152
17. van den BroekIV
van der WardtS
TalukderL
ChakmaS
BrockmanA
2004 Drug resistance in Plasmodium falciparum from the Chittagong Hill Tracts, Bangladesh. Trop Med Int Health 9 680 687
18. AhmedA
LumbV
DasMK
DevV
Wajihullah
2006 Prevalence of mutations associated with higher levels of sulfadoxine-pyrimethamine resistance in Plasmodium falciparum isolates from Car Nicobar Island and Assam, India. Antimicrob Agents Chemother 50 3934 3938
19. KublinJG
WitzigRS
ShankarAH
ZuritaJQ
GilmanRH
1998 Molecular assays for surveillance of antifolate-resistant malaria. Lancet 351 1629 1630
20. CorteseJF
CaraballoA
ContrerasCE
PloweCV
2002 Origin and dissemination of Plasmodium falciparum drug-resistance mutations in South America. J Infect Dis 186 999 1006
21. McCollumAM
MuellerK
VillegasL
UdhayakumarV
EscalanteAA
2007 Common origin and fixation of Plasmodium falciparum dhfr and dhps mutations associated with sulfadoxine-pyrimethamine resistance in a low-transmission area in South America. Antimicrob Agents Chemother 51 2085 2091
22. BaconDJ
McCollumAM
GriffingSM
SalasC
SoberonV
2009 Dynamics of malaria drug resistance patterns in the Amazon basin region following changes in Peruvian national treatment policy for uncomplicated malaria. Antimicrob Agents Chemother 53 2042 2051
23. ZhouZ
GriffingSM
de OliveiraAM
McCollumAM
QuezadaWM
2008 Decline in sulfadoxine-pyrimethamine-resistant alleles after change in drug policy in the Amazon region of Peru. Antimicrob Agents Chemother 52 739 741
24. PearceRJ
PotaH
EveheMS
Ba elH
Mombo-NgomaG
2009 Multiple origins and regional dispersal of resistant dhps in African Plasmodium falciparum malaria. PLoS Med 6 e1000055 doi:10.1371/journal.pmed.1000055
25. McCollumAM
BascoLK
TaharR
UdhayakumarV
EscalanteAA
2008 Hitchhiking and selective sweeps of Plasmodium falciparum sulfadoxine and pyrimethamine resistance alleles in a population from central Africa. Antimicrob Agents Chemother 52 4089 4097
26. NairS
WilliamsJT
BrockmanA
PaiphunL
MayxayM
2003 A selective sweep driven by pyrimethamine treatment in southeast asian malaria parasites. Mol Biol Evol 20 1526 1536
27. McCollumAM
PoeAC
HamelM
HuberC
ZhouZ
2006 Antifolate resistance in Plasmodium falciparum: multiple origins and identification of novel dhfr alleles. J Infect Dis 194 189 197
28. MitaT
TanabeK
TakahashiN
CulletonR
NdoungaM
2009 Indigenous evolution of Plasmodium falciparum pyrimethamine resistance multiple times in Africa. J Antimicrob Chemother 63 252 255
29. CertainLK
BricenoM
KiaraSM
NzilaAM
WatkinsWM
2008 Characteristics of Plasmodium falciparum dhfr haplotypes that confer pyrimethamine resistance, Kilifi, Kenya, 1987–2006. J Infect Dis 197 1743 1751
30. RoperC
PearceR
BredenkampB
GumedeJ
DrakeleyC
2003 Antifolate antimalarial resistance in southeast Africa: a population-based analysis. Lancet 361 1174 1181
31. RoperC
PearceR
NairS
SharpB
NostenF
2004 Intercontinental spread of pyrimethamine-resistant malaria. Science 305 1124
32. MaigaO
DjimdeAA
HubertV
RenardE
AubouyA
2007 A shared Asian origin of the triple-mutant dhfr allele in Plasmodium falciparum from sites across Africa. J Infect Dis 196 165 172
33. ArieyF
FandeurT
DurandR
RandrianarivelojosiaM
JambouR
2006 Invasion of Africa by a single pfcrt allele of South East Asian type. Malar J 5 34
34. NdiayeD
DailyJP
SarrO
NdirO
GayeO
2006 Defining the origin of Plasmodium falciparum resistant dhfr isolates in Senegal. Acta Trop 99 106 111
35. LynchC
PearceR
PotaH
CoxJ
AbekuTA
2008 Emergence of a dhfr mutation conferring high-level drug resistance in Plasmodium falciparum populations from southwest Uganda. J Infect Dis 197 1598 1604
36. MitaT
TanabeK
TakahashiN
TsukaharaT
EtoH
2007 Independent evolution of pyrimethamine resistance in Plasmodium falciparum isolates in Melanesia. Antimicrob Agents Chemother 51 1071 1077
37. McCollumAM
2007 Drug resistant Plasmodium falciparum: Genetic hitchhiking, selective sweeps, and multiple origins [Ph.D Thesis], Emory University, Atlanta, USA
38. SuX
FerdigMT
HuangY
HuynhCQ
LiuA
1999 A genetic map and recombination parameters of the human malaria parasite Plasmodium falciparum. Science 286 1351 1353
39. PeakallR
SmousePE
2006 GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6 288 295
40. WeirBS
CockerhamCC
1984 Estimating F-statistics for the analysis of population structure. Evolution 38 1358 1370
41. LewisPO
ZaykinD
2001 Genetic Data Analysis: Computer program for the analysis of allelic data. Version 1.0 (d16c). Free program distributed by the authors over the internet from http://lewis.eeb.uconn.edu/lewishome/software.html
42. LewontinRC
KrakauerJ
1973 Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics 74 175 195
43. BeaumontMA
NicholsRA
1996 Evaluating loci for use in the genetic analysis of population structure. Proc R Soc Lond B: Biol Sci 263 1619 1626
44. WildingCS
ButlinRK
GrahameJ
2001 Differential gene exchange between parapatric morphs of Littorina saxatilis detected using AFLP markers. J Evol Biol 14 611 619
45. AndersonTJ
NairS
SudimackD
WilliamsJT
MayxayM
2005 Geographical distribution of selected and putatively neutral SNPs in Southeast Asian malaria parasites. Mol Biol Evol 22 2362 2374
46. StorzJF
2005 Using genome scans of DNA polymorphism to infer adaptive population divergence. Mol Ecol 14 671 688
47. BeaumontMA
2005 Adaptation and speciation: what can F(st) tell us? Trends Ecol Evol 20 435 440
48. DemontisD
PertoldiC
LoeschckeV
MikkelsenK
AxelssonT
2009 Efficiency of selection, as measured by single nucleotide polymorphism variation, is dependent on inbreeding rate in Drosophila melanogaster. Mol Ecol 18 4551 4563
49. AntaoT
LopesA
LopesRJ
Beja-PereiraA
LuikartG
2008 LOSITAN: a workbench to detect molecular adaptation based on a Fst-outlier method. BMC Bioinformatics 9 323
50. GoudetJ
2001 FSTAT, a program to estimate and test gene diversities and fixation indices Version 2.9.3.2. www2.unil.ch/popgen/softwares/fstat.htm
51. SmithJM
SmithNH
O'RourkeM
SprattBG
1993 How clonal are bacteria? Proc Natl Acad Sci U S A 90 4384 4388
52. HudsonRR
1994 Analytical results concerning linkage disequilibrium in models with genetic transformation and conjugation. J Evol Biol 7 535 548
53. HauboldB
HudsonRR
2000 LIAN 3.0: detecting linkage disequilibrium in multilocus data. Linkage Analysis. Bioinformatics 16 847 848
54. BandeltHJ
ForsterP
RohlA
1999 Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16 37 48
55. FeilEJ
LiBC
AanensenDM
HanageWP
SprattBG
2004 eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol 186 1518 1530
56. NashD
NairS
MayxayM
NewtonPN
GuthmannJP
2005 Selection strength and hitchhiking around two anti-malarial resistance genes. Proc Biol Sci 272 1153 1161
57. HarrisEE
HeyJ
1999 X chromosome evidence for ancient human histories. Proc Natl Acad Sci U S A 96 3320 3324
58. GregsonA
PloweCV
2005 Mechanisms of resistance of malaria parasites to antifolates. Pharmacol Rev 57 117 145
59. PicotS
OlliaroP
de MonbrisonF
BienvenuAL
PriceRN
2009 A systematic review and meta-analysis of evidence for correlation between molecular markers of parasite resistance and treatment outcome in falciparum malaria. Malar J 8 89
60. CurtisJ
DuraisinghMT
WarhurstDC
1998 In vivo selection for a specific genotype of dihydropteroate synthetase of Plasmodium falciparum by pyrimethamine-sulfadoxine but not chlorproguanil-dapsone treatment. J Infect Dis 177 1429 1433
61. WangP
LeeCS
BayoumiR
DjimdeA
DoumboO
1997 Resistance to antifolates in Plasmodium falciparum monitored by sequence analysis of dihydropteroate synthetase and dihydrofolate reductase alleles in a large number of field samples of diverse origins. Mol Biochem Parasitol 89 161 177
62. NzilaAM
MberuEK
SuloJ
DayoH
WinstanleyPA
2000 Towards an understanding of the mechanism of pyrimethamine-sulfadoxine resistance in Plasmodium falciparum: genotyping of dihydrofolate reductase and dihydropteroate synthase of Kenyan parasites. Antimicrob Agents Chemother 44 991 996
63. OmarSA
AdaguIS
GumpDW
NdaruNP
WarhurstDC
2001 Plasmodium falciparum in Kenya: high prevalence of drug-resistance-associated polymorphisms in hospital admissions with severe malaria in an epidemic area. Ann Trop Med Parasitol 95 661 669
64. StaedkeSG
SendagireH
LamolaS
KamyaMR
DorseyG
2004 Relationship between age, molecular markers, and response to sulphadoxine-pyrimethamine treatment in Kampala, Uganda. Trop Med Int Health 9 624 629
65. KunJF
LehmanLG
LellB
Schmidt-OttR
KremsnerPG
1999 Low-dose treatment with sulfadoxine-pyrimethamine combinations selects for drug-resistant Plasmodium falciparum strains. Antimicrob Agents Chemother 43 2205 2208
66. KublinJG
DzinjalamalaFK
KamwendoDD
MalkinEM
CorteseJF
2002 Molecular markers for failure of sulfadoxine-pyrimethamine and chlorproguanil-dapsone treatment of Plasmodium falciparum malaria. J Infect Dis 185 380 388
67. KyabayinzeD
CattamanchiA
KamyaMR
RosenthalPJ
DorseyG
2003 Validation of a simplified method for using molecular markers to predict sulfadoxine-pyrimethamine treatment failure in African children with falciparum malaria. Am J Trop Med Hyg 69 247 252
68. NageshaHS
DinS
CaseyGJ
SusantiAI
FryauffDJ
2001 Mutations in the pfmdr1, dhfr and dhps genes of Plasmodium falciparum are associated with in-vivo drug resistance in West Papua, Indonesia. Trans R Soc Trop Med Hyg 95 43 49
69. LumbV
DasMK
MittraP
AhmedA
KumarM
2009 Emergence of an unusual sulfadoxine-pyrimethamine resistance pattern and a novel K540N mutation in dihydropteroate synthetase in Plasmodium falciparum isolates obtained from Car Nicobar Island, India, after the 2004 Tsunami. J Infect Dis 199 1064 1073
70. WoottonJC
FengX
FerdigMT
CooperRA
MuJ
2002 Genetic diversity and chloroquine selective sweeps in Plasmodium falciparum. Nature 418 320 323
Štítky
Hygiena a epidemiológia Infekčné lekárstvo LaboratóriumČlánok vyšiel v časopise
PLOS Pathogens
2010 Číslo 3
- Očkování proti virové hemoragické horečce Ebola experimentální vakcínou rVSVDG-ZEBOV-GP
- Parazitičtí červi v terapii Crohnovy choroby a dalších zánětlivých autoimunitních onemocnění
- Koronavirus hýbe světem: Víte jak se chránit a jak postupovat v případě podezření?
Najčítanejšie v tomto čísle
- Kaposi's Sarcoma-Associated Herpesvirus ORF57 Protein Binds and Protects a Nuclear Noncoding RNA from Cellular RNA Decay Pathways
- Endocytosis of the Anthrax Toxin Is Mediated by Clathrin, Actin and Unconventional Adaptors
- Perforin and IL-2 Upregulation Define Qualitative Differences among Highly Functional Virus-Specific Human CD8 T Cells
- Inhibition of Macrophage Migration Inhibitory Factor Ameliorates Ocular -Induced Keratitis