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The Evolution and Genetics of Virus Host Shifts


Emerging viral diseases are often the product of a host shift, where a pathogen jumps from its original host into a novel species. Phylogenetic studies show that host shifts are a frequent event in the evolution of most pathogens, but why pathogens successfully jump between some host species but not others is only just becoming clear. The susceptibility of potential new hosts can vary enormously, with close relatives of the natural host typically being the most susceptible. Often, pathogens must adapt to successfully infect a novel host, for example by evolving to use different cell surface receptors, to escape the immune response, or to ensure they are transmitted by the new host. In viruses there are often limited molecular solutions to achieve this, and the same sequence changes are often seen each time a virus infects a particular host. These changes may come at a cost to other aspects of the pathogen's fitness, and this may sometimes prevent host shifts from occurring. Here we examine how these evolutionary factors affect patterns of host shifts and disease emergence.


Vyšlo v časopise: The Evolution and Genetics of Virus Host Shifts. PLoS Pathog 10(11): e32767. doi:10.1371/journal.ppat.1004395
Kategorie: Review
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.ppat.1004395

Souhrn

Emerging viral diseases are often the product of a host shift, where a pathogen jumps from its original host into a novel species. Phylogenetic studies show that host shifts are a frequent event in the evolution of most pathogens, but why pathogens successfully jump between some host species but not others is only just becoming clear. The susceptibility of potential new hosts can vary enormously, with close relatives of the natural host typically being the most susceptible. Often, pathogens must adapt to successfully infect a novel host, for example by evolving to use different cell surface receptors, to escape the immune response, or to ensure they are transmitted by the new host. In viruses there are often limited molecular solutions to achieve this, and the same sequence changes are often seen each time a virus infects a particular host. These changes may come at a cost to other aspects of the pathogen's fitness, and this may sometimes prevent host shifts from occurring. Here we examine how these evolutionary factors affect patterns of host shifts and disease emergence.


Zdroje

1. SharpPM, HahnBH (2010) The evolution of HIV-1 and the origin of AIDS. Philos Trans R Soc Lond B Biol Sci 365: 2487–2494.

2. WebbyRJ, WebsterRG (2001) Emergence of influenza A viruses. Philos Trans R Soc Lond B Biol Sci 356: 1817–1828.

3. LiuWM, LiYY, LearnGH, RudicellRS, RobertsonJD, et al. (2010) Origin of the human malaria parasite Plasmodium falciparum in gorillas. Nature 467: 420–U467.

4. LiWD, ShiZL, YuM, RenWZ, SmithC, et al. (2005) Bats are natural reservoirs of SARS-like coronaviruses. Science 310: 676–679.

5. ChuaKB, BelliniWJ, RotaPA, HarcourtBH, TaminA, et al. (2000) Nipah virus: a recently emergent deadly paramyxovirus. Science 288: 1432–1435.

6. FuruseY, SuzukiA, OshitaniH (2010) Origin of measles virus: divergence from rinderpest virus between the 11th and 12th centuries. Virol J 7: 52.

7. de VienneDM, RefregierG, Lopez-VillavicencioM, TellierA, HoodME, et al. (2013) Cospeciation vs host-shift speciation: methods for testing, evidence from natural associations and relation to coevolution. New Phytol 198: 347–385.

8. SharpPM, SimmondsP (2011) Evaluating the evidence for virus/host co-evolution. Curr Opin Virol 1: 436–441.

9. CleavelandS, LaurensonMK, TaylorLH (2001) Diseases of humans and their domestic mammals: pathogen characteristics, host range and the risk of emergence. Philos Trans R Soc Lond B Biol Sci 356: 991–999.

10. DaviesTJ, PedersenAB (2008) Phylogeny and geography predict pathogen community similarity in wild primates and humans. Proc Biol Sci 275: 1695–1701.

11. TaylorLH, LathamSM, WoolhouseME (2001) Risk factors for human disease emergence. Philos Trans R Soc Lond B Biol Sci 356: 983–989.

12. WoolhouseME, HaydonDT, AntiaR (2005) Emerging pathogens: the epidemiology and evolution of species jumps. Trends Ecol Evol 20: 238–244.

13. FariaNR, SuchardMA, RambautA, StreickerDG, LemeyP (2013) Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints. Philos Trans R Soc Lond B Biol Sci 368: 20120196.

14. PedersenAB, DaviesTJ (2009) Cross-species pathogen transmission and disease emergence in primates. Ecohealth 6: 496–508.

15. KeesingF, BeldenLK, DaszakP, DobsonA, HarvellCD, et al. (2010) Impacts of biodiversity on the emergence and transmission of infectious diseases. Nature 468: 647–652.

16. LongdonB, HadfieldJD, WebsterCL, ObbardDJ, JigginsFM (2011) Host phylogeny determines viral persistence and replication in novel hosts. PLoS Pathogens 7: e1002260.

17. de VienneDM, HoodME, GiraudT (2009) Phylogenetic determinants of potential host shifts in fungal pathogens. J Evol Biol 22: 2532–2541.

18. GilbertGS, WebbCO (2007) Phylogenetic signal in plant pathogen-host range. Proc Natl Acad Sci U S A 104: 4979–4983.

19. TinsleyMC, MajerusMEN (2007) Small steps or giant leaps for male-killers? Phylogenetic constraints to male-killer host shifts. BMC Evol Biol 7: 238.

20. RussellJA, Goldman-HuertasB, MoreauCS, BaldoL, StahlhutJK, et al. (2009) Specialization and geographic isolation among Wolbachia symbionts from ants and lycaenid butterflies. Evolution 63: 624–640.

21. PerlmanSJ, JaenikeJ (2003) Infection success in novel hosts: An experimental and phylogenetic study of Drosophila-parasitic nematodes. Evolution 57: 544–557.

22. StreickerDG, TurmelleAS, VonhofMJ, KuzminIV, McCrackenGF, et al. (2010) Host Phylogeny Constrains Cross-Species Emergence and Establishment of Rabies Virus in Bats. Science 329: 676–679.

23. CooperN, GriffinR, FranzM, OmotayoM, NunnCL, et al. (2012) Phylogenetic host specificity and understanding parasite sharing in primates. Ecol Lett 15: 1370–1377.

24. WaxmanD, WeinertLA, WelchJJ (2014) Inferring host range dynamics from comparative data: the protozoan parasites of new world monkeys. Am Nat 184: 65–74.

25. HuangS, Bininda-EmondsORP, StephensPR, GittlemanJL, AltizerS (2013) Phylogenetically related and ecologically similar carnivores harbor similar parasite assemblages. J Anim Ecol E-pub ahead of print. doi:10.1111/1365-2656.12160

26. HadfieldJD, KrasnovBR, PoulinR, NakagawaS (2014) A Tale of Two Phylogenies: Comparative Analyses of Ecological Interactions. Am Nat 183: 174–187.

27. RamsdenC, HolmesEC, CharlestonMA (2009) Hantavirus evolution in relation to its rodent and insectivore hosts: no evidence for codivergence. Mol Biol Evol 26: 143–153.

28. LiJL, CornmanRS, EvansJD, PettisJS, ZhaoY, et al. (2014) Systemic spread and propagation of a plant-pathogenic virus in European honeybees, Apis mellifera. MBio 5: e00898-00813.

29. CampisanoA, OmettoL, CompantS, PancherM, AntonielliL, et al. (2014) Interkingdom Transfer of the Acne-Causing Agent, Propionibacterium acnes, from Human to Grapevine. Mol Biol Evol 31: 1059–1065.

30. Salazar-JaramilloL, PaspatiA, van de ZandeL, VermeulenCJ, SchwanderT, et al. (2014) Evolution of a cellular immune response in Drosophila: a phenotypic and genomic comparative analysis. Genome Biol Evol 6: 273–289.

31. WeinertLA, WelchJJ, SuchardMA, LemeyP, RambautA, et al. (2012) Molecular dating of human-to-bovid host jumps by Staphylococcus aureus reveals an association with the spread of domestication. Biol Lett 8: 829–832.

32. WoolhouseME, Gowtage-SequeriaS (2005) Host range and emerging and reemerging pathogens. Emerg Infect Dis 11: 1842–1847.

33. ShinyaK, EbinaM, YamadaS, OnoM, KasaiN, et al. (2006) Avian flu: influenza virus receptors in the human airway. Nature 440: 435–436.

34. TetartF, RepoilaF, MonodC, KrischHM (1996) Bacteriophage T4 host range is expanded by duplications of a small domain of the tail fiber adhesin. J Mol Biol 258: 726–731.

35. FerrisMT, JoyceP, BurchCL (2007) High frequency of mutations that expand the host range of an RNA virus. Genetics 176: 1013–1022.

36. HallAR, ScanlanPD, BucklingA (2011) Bacteria-Phage Coevolution and the Emergence of Generalist Pathogens. Am Nat 177: 44–53.

37. PatersonS, VogwillT, BucklingA, BenmayorR, SpiersAJ, et al. (2010) Antagonistic coevolution accelerates molecular evolution. Nature 464: 275–278.

38. CrillWD, WichmanHA, BullJJ (2000) Evolutionary reversals during viral adaptation to alternating hosts. Genetics 154: 27–37.

39. WoolhouseM, ScottF, HudsonZ, HoweyR, Chase-ToppingM (2012) Human viruses: discovery and emergence. Philos Trans R Soc Lond B Biol Sci 367: 2864–2871.

40. TruyenU, EvermannJF, VielerE, ParrishCR (1996) Evolution of canine parvovirus involved loss and gain of feline host range. Virology 215: 186–189.

41. LoverdoC, Lloyd-SmithJO (2013) Evolutionary Invasion and Escape in the Presence of Deleterious Mutations. Plos ONE 8: e61879.

42. SanjuanR, NebotMR, ChiricoN, ManskyLM, BelshawR (2010) Viral mutation rates. J Virol 84: 9733–9748.

43. CarrascoP, de la IglesiaF, ElenaSF (2007) Distribution of fitness and virulence effects caused by single-nucleotide substitutions in Tobacco Etch virus. J Virol 81: 12979–12984.

44. OrrHA (2000) The rate of adaptation in asexuals. Genetics 155: 961–968.

45. LalicJ, CuevasJM, ElenaSF (2011) Effect of Host Species on the Distribution of Mutational Fitness Effects for an RNA Virus. Plos Genetics 7: e1002378.

46. AnishchenkoM, BowenRA, PaesslerS, AustgenL, GreeneIP, et al. (2006) Venezuelan encephalitis emergence mediated by a phylogenetically predicted viral mutation. Proc Natl Acad Sci U S A 103: 4994–4999.

47. DuffyS, BurchCL, TurnerPE (2007) Evolution of host specificity drives reproductive isolation among RNA viruses. Evolution 61: 2614–2622.

48. LinsterM, van BoheemenS, de GraafM, SchrauwenEJ, LexmondP, et al. (2014) Identification, Characterization, and Natural Selection of Mutations Driving Airborne Transmission of A/H5N1 Virus. Cell 157: 329–339.

49. TsetsarkinKA, ChenRB, LealG, ForresterN, HiggsS, et al. (2011) Chikungunya virus emergence is constrained in Asia by lineage-specific adaptive landscapes. Proc Natl Acad Sci U S A 108: 7872–7877.

50. RemoldSK, RambautA, TurnerPE (2008) Evolutionary genomics of host adaptation in vesicular stomatitis virus. Mol Biol Evol 25: 1138–1147.

51. WichmanHA, BadgettMR, ScottLA, BoulianneCM, BullJJ (1999) Different trajectories of parallel evolution during viral adaptation. Science 285: 422–424.

52. BullJJ, BadgettMR, WichmanHA, HuelsenbeckJP, HillisDM, et al. (1997) Exceptional convergent evolution in a virus. Genetics 147: 1497–1507.

53. BedhommeS, LafforgueG, ElenaSF (2012) Multihost experimental evolution of a plant RNA virus reveals local adaptation and host-specific mutations. Mol Biol Evol 29: 1481–1492.

54. Agudelo-RomeroP, de la IglesiaF, ElenaSF (2008) The pleiotropic cost of host-specialization in Tobacco etch potyvirus. Infect Genet Evol 8: 806–814.

55. WallisCM, StoneAL, ShermanDJ, DamsteegtVD, GildowFE, et al. (2007) Adaptation of plum pox virus to a herbaceous host (Pisum sativum) following serial passages. J Gen Virol 88: 2839–2845.

56. RicoP, IvarsP, ElenaSF, HernandezC (2006) Insights into the selective pressures restricting Pelargonium flower break virus genome variability: Evidence for host adaptation. J Virol 80: 8124–8132.

57. LiangXZ, LeeBTK, WongSM (2002) Covariation in the capsid protein of Hibiscus chlorotic ringspot virus induced by serial passaging in a host that restricts movement leads to avirulence in its systemic host. J Virol 76: 12320–12324.

58. StreickerDG, AltizerSM, Velasco-VillaA, RupprechtCE (2012) Variable evolutionary routes to host establishment across repeated rabies virus host shifts among bats. Proc Natl Acad Sci U S A 109: 19715–19720.

59. WainLV, BailesE, Bibollet-RucheF, DeckerJM, KeeleBF, et al. (2007) Adaptation of HIV-1 to its human host. Mol Biol Evol 24: 1853–1860.

60. LiuW, TangF, FontanetA, ZhanL, WangTB, et al. (2005) Molecular epidemiology of SARS-associated coronavirus, Beijing. Emerg Infect Dis 11: 1420–1424.

61. MalimMH, BieniaszPD (2012) HIV Restriction Factors and Mechanisms of Evasion. Cold Spring Harb Perspect Med 2: a006940.

62. WorobeyM, GemmelM, TeuwenDE, HaselkornT, KunstmanK, et al. (2008) Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960. Nature 455: 661–664.

63. LamaJ, MangasarianA, TronoD (1999) Cell-surface expression of CD4 reduces HIV-1 infectivity by blocking Env incorporation in a Nef- and Vpu-inhibitable manner. Curr Biol 9: 622–631.

64. SauterD, SchindlerM, SpechtA, LandfordWN, MunchJ, et al. (2009) Tetherin-Driven Adaptation of Vpu and Nef Function and the Evolution of Pandemic and Nonpandemic HIV-1 Strains. Cell Host & Microbe 6: 409–421.

65. DuffyS, TurnerPE, BurchCL (2006) Pleiotropic costs of niche expansion in the RNA bacteriophage phi 6. Genetics 172: 751–757.

66. BenmayorR, HodgsonDJ, PerronGG, BucklingA (2009) Host Mixing and Disease Emergence. Curr Biol 19: 764–767.

67. NovellaIS, ClarkeDK, QuerJ, DuarteEA, LeeCH, et al. (1995) Extreme fitness differences in mammalian and insect hosts after continuous replication of vesicular stomatitis virus in sandfly cells. J Virol 69: 6805–6809.

68. GreeneIP, WangE, DeardorffER, MilleronR, DomingoE, et al. (2005) Effect of alternating passage on adaptation of sindbis virus to vertebrate and invertebrate cells. J Virol 79: 14253–14260.

69. CoffeyLL, VasilakisN, BraultAC, PowersAM, TripetF, et al. (2008) Arbovirus evolution in vivo is constrained by host alternation. Proc Natl Acad Sci U S A 105: 6970–6975.

70. AndersonRM, MayRM (1982) Coevolution of hosts and parasites. Parasitology 85 (Pt 2) 411–426.

71. JensenKH, LittleTJ, SkorpingA, EbertD (2006) Empirical support for optimal virulence in a castrating parasite. PLoS Biol 4: e197.

72. Ebert D, Bull JJ (2008) The evolution and expression of virulence. In: Stearns SC, Koella JC, editors. Evolution in Health and Disease. 2nd ed. Oxford: Oxford University Press. pp. 153–167.

73. de RoodeJC, YatesAJ, AltizerS (2008) Virulence-transmission trade-offs and population divergence in virulence in a naturally occurring butterfly parasite. Proc Natl Acad Sci U S A 105: 7489–7494.

74. FraserC, HollingsworthTD, ChapmanR, de WolfF, HanageWP (2007) Variation in HIV-1 set-point viral load: Epidemiological analysis and an evolutionary hypothesis. Proc Natl Acad Sci U S A 104: 17441–17446.

75. KerrPJ (2012) Myxomatosis in Australia and Europe: a model for emerging infectious diseases. Antiviral Res 93: 387–415.

76. Fenner F, Ratcliffe FN (1965) Myxomatosis. Cambridge: Cambridge University press.

77. KerrPJ, GhedinE, DePasseJV, FitchA, CattadoriIM, et al. (2012) Evolutionary history and attenuation of myxoma virus on two continents. PLoS Pathog 8: e1002950.

78. LoMK, LoweL, HummelKB, SazzadHM, GurleyES, et al. (2012) Characterization of Nipah virus from outbreaks in Bangladesh, 2008–2010. Emerg Infect Dis 18: 248–255.

79. LeroyEM, RouquetP, FormentyP, SouquiereS, KilbourneA, et al. (2004) Multiple Ebola virus transmission events and rapid decline of central African wildlife. Science 303: 387–390.

80. HolmesEC (2013) What can we predict about viral evolution and emergence? Curr Opin Virol 3: 180–184.

81. WolfeND, DunavanCP, DiamondJ (2007) Origins of major human infectious diseases. Nature 447: 279–283.

82. ImaiM, WatanabeT, HattaM, DasSC, OzawaM, et al. (2012) Experimental adaptation of an influenza H5 HA confers respiratory droplet transmission to a reassortant H5 HA/H1N1 virus in ferrets. Nature 486: 420–+.

83. HerfstS, SchrauwenEJA, LinsterM, ChutinimitkulS, de WitE, et al. (2012) Airborne Transmission of Influenza A/H5N1 Virus Between Ferrets. Science 336: 1534–1541.

84. RussellCA, FonvilleJM, BrownAE, BurkeDF, SmithDL, et al. (2012) The potential for respiratory droplet-transmissible A/H5N1 influenza virus to evolve in a mammalian host. Science 336: 1541–1547.

85. EngelstadterJ, HurstGD (2006) The dynamics of parasite incidence across host species. Evol Ecol 20: 603–616.

86. CuthillJH, CharlestonMA (2013) A Simple Model Explains the Dynamics of Preferential Host Switching among Mammal Rna Viruses. Evolution 67: 980–990.

87. SmithJM (1976) What determines the rate of evolution? Am Nat 110: 331–338.

88. MacArthur RH, Wilson EO (1967) The theory of island biogeography. Princeton: Princeton University Press.

89. JoyJB, CrespiBJ (2012) Island phytophagy: explaining the remarkable diversity of plant-feeding insects. Proc Biol Sci 279: 3250–3255.

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Hygiena a epidemiológia Infekčné lekárstvo Laboratórium

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