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Identification of a Novel Type of Spacer Element Required for Imprinting in Fission Yeast
Asymmetrical segregation of differentiated sister chromatids is thought to be important for cellular differentiation in higher eukaryotes. Similarly, in fission yeast, cellular differentiation involves the asymmetrical segregation of a chromosomal imprint. This imprint has been shown to consist of two ribonucleotides that are incorporated into the DNA during lagging-strand synthesis in response to a replication pause, but the underlying mechanism remains unknown. Here we present key novel discoveries important for unravelling this process. Our data show that cis-acting sequences within the mat1 cassette mediate pausing of replication forks at the proximity of the imprinting site, and the results suggest that this pause dictates specific priming at the position of imprinting in a sequence-independent manner. Also, we identify a novel type of cis-acting spacer region important for the imprinting process that affects where subsequent primers are put down after the replication fork is released from the pause. Thus, our data suggest that the imprint is formed by ligation of a not-fully-processed Okazaki fragment to the subsequent fragment. The presented work addresses how differentiated sister chromatids are established during DNA replication through the involvement of replication barriers.
Vyšlo v časopise: Identification of a Novel Type of Spacer Element Required for Imprinting in Fission Yeast. PLoS Genet 7(3): e32767. doi:10.1371/journal.pgen.1001328
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1001328Souhrn
Asymmetrical segregation of differentiated sister chromatids is thought to be important for cellular differentiation in higher eukaryotes. Similarly, in fission yeast, cellular differentiation involves the asymmetrical segregation of a chromosomal imprint. This imprint has been shown to consist of two ribonucleotides that are incorporated into the DNA during lagging-strand synthesis in response to a replication pause, but the underlying mechanism remains unknown. Here we present key novel discoveries important for unravelling this process. Our data show that cis-acting sequences within the mat1 cassette mediate pausing of replication forks at the proximity of the imprinting site, and the results suggest that this pause dictates specific priming at the position of imprinting in a sequence-independent manner. Also, we identify a novel type of cis-acting spacer region important for the imprinting process that affects where subsequent primers are put down after the replication fork is released from the pause. Thus, our data suggest that the imprint is formed by ligation of a not-fully-processed Okazaki fragment to the subsequent fragment. The presented work addresses how differentiated sister chromatids are established during DNA replication through the involvement of replication barriers.
Zdroje
1. TajbakhshS
2008 Stem cell identity and template DNA strand segregation. Curr Opin Cell Biol 20 716 722
2. MiyataH
MiyataM
1981 Mode of conjugation in homotallic cells of Schizosaccharomyces pombe. J Gen Appl Microbiol 27 365 371
3. EgelR
EieB
1987 Cell lineage asymmetry for Schizosaccharomyces pombe: Unilateral transmission of a high-frequency state of mating-type switching in diploid pedigrees. Curr Genet 12 429 433
4. EgelR
1984 The pedigree pattern of mating-type switching in Schizosaccharomyces pombe. Curr Genet 8 205 210
5. KlarAJ
1987 Differentiated parental DNA strands confer developmental asymmetry on daughter cells in fission yeast. Nature 326 466 470
6. KlarAJ
1990 The developmental fate of fission yeast cells is determined by the pattern of inheritance of parental and grandparental DNA strands. EMBO J 9 1407 1415
7. BeachDH
1983 Cell type switching by DNA transposition in fission yeast. Nature 305 682 687
8. KellyM
BurkeJ
SmithM
KlarA
BeachD
1988 Four mating-type genes control sexual differentiation in the fission yeast. EMBO J 7 1537 1547
9. SinghJ
KlarAJ
1993 DNA polymerase-alpha is essential for mating-type switching in fission yeast. Nature 361 271 273
10. DalgaardJZ
KlarAJ
1999 Orientation of DNA replication establishes mating-type switching pattern in S. pombe. Nature 400 181 184
11. HolmesAM
KaykovA
ArcangioliB
2005 Molecular and cellular dissection of mating-type switching steps in Schizosaccharomyces pombe. Mol Cell Biol 25 303 311
12. VengrovaS
DalgaardJZ
2004 RNase-sensitive DNA modification(s) initiates S. pombe mating-type switching. Genes Dev 18 794 804
13. KaykovA
HolmesAM
ArcangioliB
2004 Formation, maintenance and consequences of the imprint at the mating-type locus in fission yeast. EMBO J 23 930 938
14. Yamada-InagawaT
KlarAJ
DalgaardJZ
2007 Schizosaccharomyces pombe switches mating type by the synthesis-dependent strand-annealing mechanism. Genetics 177 255 265
15. ArcangioliB
de LahondesR
2000 Fission yeast switches mating type by a replication-recombination coupled process. EMBO J 19 1389 1396
16. KlarAJ
BonaduceMJ
1993 The mechanism of fission yeast mating-type interconversion: evidence for two types of epigenetically inherited chromosomal imprinted events. Cold Spring Harb Symp Quant Biol 58 457 465
17. VengrovaS
DalgaardJZ
2006 The wild-type Schizosaccharomyces pombe mat1 imprint consists of two ribonucleotides. EMBO Rep 7 59 65
18. NielsenO
EgelR
1989 Mapping the double-strand breaks at the mating-type locus in fission yeast by genomic sequencing. EMBO J 8 269 276
19. ArcangioliB
1998 A site - and strand-specific DNA break confers asymmetric switching potential in fission yeast. EMBO J 17 4503 4510
20. KaykovA
ArcangioliB
2004 A programmed strand-specific and modified nick in S. pombe constitutes a novel type of chromosomal imprint. Curr Biol 14 1924 1928
21. EgelR
BeachDH
KlarAJ
1984 Genes required for initiation and resolution steps of mating-type switching in fission yeast. Proc Natl Acad Sci U S A 81 3481 3485
22. SommarivaE
PellnyTK
KarahanN
KumarS
HubermanJA
2005 Schizosaccharomyces pombe Swi1, Swi3, and Hsk1 are components of a novel S-phase response pathway to alkylation damage. Mol Cell Biol 25 2770 2784
23. NoguchiE
NoguchiC
DuLL
RussellP
2003 Swi1 prevents replication fork collapse and controls checkpoint kinase Cds1. Mol Cell Biol 23 7861 7874
24. DalgaardJZ
KlarAJ
2000 swi1 and swi3 perform imprinting, pausing, and termination of DNA replication in S. pombe. Cell 102 745 751
25. DalgaardJZ
KlarAJ
2001 A DNA replication-arrest site RTS1 regulates imprinting by determining the direction of replication at mat1 in S. pombe. Genes Dev 15 2060 2068
26. DalgaardJZ
EydmannT
KoulintchenkoM
SayracS
VengrovaS
2009 Random and site-specific replication termination. Methods Mol Biol 521 35 53
27. StyrkarsdottirU
EgelR
NielsenO
1993 The smt-0 mutation which abolishes mating-type switching in fission yeast is a deletion. Curr Genet 23 184 186
28. ArcangioliB
CopelandTD
KlarAJ
1994 Sap1, a protein that binds to sequences required for mating-type switching, is essential for viability in Schizosaccharomyces pombe. Mol Cell Biol 14 2058 2065
29. GerbiSA
BielinskyAK
1997 Replication initiation point mapping. Methods 13 271 280
30. RoseaulinL
YamadaY
TsutsuiY
RussellP
IwasakiH
2008 Mus81 is essential for sister chromatid recombination at broken replication forks. EMBO J 27 1378 1387
31. CravenRA
GriffithsDJ
SheldrickKS
RandallRE
HaganIM
1998 Vectors for the expression of tagged proteins in Schizosaccharomyces pombe. Gene 221 59 68
32. EydmannT
SommarivaE
InagawaT
MianS
KlarAJ
2008 Rtf1-mediated eukaryotic site-specific replication termination. Genetics 180 27 39
33. KimSM
DubeyDD
HubermanJA
2003 Early-replicating heterochromatin. Genes Dev 17 330 335
34. VengrovaS
DalgaardJZ
2005 The Schizosaccharomyces pombe imprint—nick or ribonucleotide(s)? Curr Biol : - 15 R326 327; author reply R327
35. NoguchiE
NoguchiC
McDonaldWH
YatesJR3rd
RussellP
2004 Swi1 and Swi3 are components of a replication fork protection complex in fission yeast. Mol Cell Biol 24 8342 8355
36. LeeJB
HiteRK
HamdanSM
XieXS
RichardsonCC
2006 DNA primase acts as a molecular brake in DNA replication. Nature 439 621 624
37. MorenoS
KlarA
NurseP
1991 Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol 194 795 823
38. BrewerBJ
FangmanWL
1987 The localization of replication origins on ARS plasmids in S. cerevisiae. Cell 51 463 471
39. HubermanJA
SpotilaLD
NawotkaKA
el-AssouliSM
DavisLR
1987 The in vivo replication origin of the yeast 2 microns plasmid. Cell 51 473 481
40. KigerJAJr
SinsheimerRL
1969 Vegetative lambda DNA. IV. Fractionation of replicating lambda DNA on benzoylated-naphthoylated DEAE cellulose. J Mol Biol 40 467 490
41. RuvenHJ
SeelenCM
LohmanPH
MullendersLH
van ZeelandAA
1994 Efficient synthesis of 32P-labeled single-stranded DNA probes using linear PCR; application of the method for analysis of strand-specific DNA repair. Mutat Res 315 189 195
42. SchmittME
BrownTA
TrumpowerBL
1990 A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae. Nucleic Acids Res 18 3091 3092
43. RosenKM
LampertiED
Villa-KomaroffL
1990 Optimizing the northern blot procedure. Biotechniques 8 398 403
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