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Lifespan Extension Conferred by Endoplasmic Reticulum Secretory Pathway Deficiency Requires Induction of the Unfolded Protein Response


Cells respond to accumulation of misfolded proteins in the endoplasmic reticulum (ER) by activating the unfolded protein response (UPR) signaling pathway. The UPR restores ER homeostasis by degrading misfolded proteins, inhibiting translation, and increasing expression of chaperones that enhance ER protein folding capacity. Although ER stress and protein aggregation have been implicated in aging, the role of UPR signaling in regulating lifespan remains unknown. Here we show that deletion of several UPR target genes significantly increases replicative lifespan in yeast. This extended lifespan depends on a functional ER stress sensor protein, Ire1p, and is associated with constitutive activation of upstream UPR signaling. We applied ribosome profiling coupled with next generation sequencing to quantitatively examine translational changes associated with increased UPR activity and identified a set of stress response factors up-regulated in the long-lived mutants. Besides known UPR targets, we uncovered up-regulation of components of the cell wall and genes involved in cell wall biogenesis that confer resistance to multiple stresses. These findings demonstrate that the UPR is an important determinant of lifespan that governs ER stress and identify a signaling network that couples stress resistance to longevity.


Vyšlo v časopise: Lifespan Extension Conferred by Endoplasmic Reticulum Secretory Pathway Deficiency Requires Induction of the Unfolded Protein Response. PLoS Genet 10(1): e32767. doi:10.1371/journal.pgen.1004019
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1004019

Souhrn

Cells respond to accumulation of misfolded proteins in the endoplasmic reticulum (ER) by activating the unfolded protein response (UPR) signaling pathway. The UPR restores ER homeostasis by degrading misfolded proteins, inhibiting translation, and increasing expression of chaperones that enhance ER protein folding capacity. Although ER stress and protein aggregation have been implicated in aging, the role of UPR signaling in regulating lifespan remains unknown. Here we show that deletion of several UPR target genes significantly increases replicative lifespan in yeast. This extended lifespan depends on a functional ER stress sensor protein, Ire1p, and is associated with constitutive activation of upstream UPR signaling. We applied ribosome profiling coupled with next generation sequencing to quantitatively examine translational changes associated with increased UPR activity and identified a set of stress response factors up-regulated in the long-lived mutants. Besides known UPR targets, we uncovered up-regulation of components of the cell wall and genes involved in cell wall biogenesis that confer resistance to multiple stresses. These findings demonstrate that the UPR is an important determinant of lifespan that governs ER stress and identify a signaling network that couples stress resistance to longevity.


Zdroje

1. RonD, WalterP (2007) Signal integration in the endoplasmic reticulum unfolded protein response. Nat Rev Mol Cell Biol 8: 519–529.

2. McCrackenAA, BrodskyJL (2003) Evolving questions and paradigm shifts in endoplasmic-reticulum-associated degradation (ERAD). Bioessays 25: 868–877.

3. HardingHP, ZhangY, BertolottiA, ZengH, RonD (2000) Perk is essential for translational regulation and cell survival during the unfolded protein response. Mol Cell 5: 897–904.

4. SidrauskiC, WalterP (1997) The transmembrane kinase Ire1p is a site-specific endonuclease that initiates mRNA splicing in the unfolded protein response. Cell 90: 1031–1039.

5. CoxJS, ShamuCE, WalterP (1993) Transcriptional induction of genes encoding endoplasmic reticulum resident proteins requires a transmembrane protein kinase. Cell 73: 1197–1206.

6. MoriK, MaW, GethingMJ, SambrookJ (1993) A transmembrane protein with a cdc2+/CDC28-related kinase activity is required for signaling from the ER to the nucleus. Cell 74: 743–756.

7. AragonT, van AnkenE, PincusD, SerafimovaIM, KorennykhAV, et al. (2009) Messenger RNA targeting to endoplasmic reticulum stress signalling sites. Nature 457: 736–740.

8. ShamuCE, WalterP (1996) Oligomerization and phosphorylation of the Ire1p kinase during intracellular signaling from the endoplasmic reticulum to the nucleus. Embo J 15: 3028–3039.

9. LeeKP, DeyM, NeculaiD, CaoC, DeverTE, et al. (2008) Structure of the dual enzyme Ire1 reveals the basis for catalysis and regulation in nonconventional RNA splicing. Cell 132: 89–100.

10. TraversKJ, PatilCK, WodickaL, LockhartDJ, WeissmanJS, et al. (2000) Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation. Cell 101: 249–258.

11. LeeAH, HeidtmanK, HotamisligilGS, GlimcherLH (2011) Dual and opposing roles of the unfolded protein response regulated by IRE1alpha and XBP1 in proinsulin processing and insulin secretion. Proc Natl Acad Sci U S A 108: 8885–8890.

12. HanD, LernerAG, Vande WalleL, UptonJP, XuW, et al. (2009) IRE1alpha kinase activation modes control alternate endoribonuclease outputs to determine divergent cell fates. Cell 138: 562–575.

13. HollienJ, WeissmanJS (2006) Decay of endoplasmic reticulum-localized mRNAs during the unfolded protein response. Science 313: 104–107.

14. SalminenA, KaarnirantaK (2010) ER stress and hormetic regulation of the aging process. Ageing Res Rev 9: 211–217.

15. SteffenKK, McCormickMA, PhamKM, MacKayVL, DelaneyJR, et al. (2012) Ribosome deficiency protects against ER stress in Saccharomyces cerevisiae. Genetics 191: 107–118.

16. JohnsonTE, HendersonS, MurakamiS, de CastroE, de CastroSH, et al. (2002) Longevity genes in the nematode Caenorhabditis elegans also mediate increased resistance to stress and prevent disease. J Inherit Metab Dis 25: 197–206.

17. RionS, KaweckiTJ (2007) Evolutionary biology of starvation resistance: what we have learned from Drosophila. J Evol Biol 20: 1655–1664.

18. DelaneyJR, AhmedU, ChouA, SimS, CarrD, et al. (2012) Stress profiling of longevity mutants identifies Afg3 as a mitochondrial determinant of cytoplasmic mRNA translation and aging. Aging Cell 12: 156–166.

19. KaeberleinM (2010) Lessons on longevity from budding yeast. Nature 464: 513–519.

20. JonikasMC, CollinsSR, DenicV, OhE, QuanEM, et al. (2009) Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum. Science 323: 1693–1697.

21. BurdaP, JakobCA, BeinhauerJ, HegemannJH, AebiM (1999) Ordered assembly of the asymmetrically branched lipid-linked oligosaccharide in the endoplasmic reticulum is ensured by the substrate specificity of the individual glycosyltransferases. Glycobiology 9: 617–625.

22. TanakaS, MaedaY, TashimaY, KinoshitaT (2004) Inositol deacylation of glycosylphosphatidylinositol-anchored proteins is mediated by mammalian PGAP1 and yeast Bst1p. J Biol Chem 279: 14256–14263.

23. KaeberleinM, PowersRW3rd, SteffenKK, WestmanEA, HuD, et al. (2005) Regulation of yeast replicative life span by TOR and Sch9 in response to nutrients. Science 310: 1193–1196.

24. IngoliaNT, GhaemmaghamiS, NewmanJR, WeissmanJS (2009) Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324: 218–223.

25. GhoshAK, RamakrishnanG, RajasekharanR (2008) YLR099C (ICT1) encodes a soluble Acyl-CoA-dependent lysophosphatidic acid acyltransferase responsible for enhanced phospholipid synthesis on organic solvent stress in Saccharomyces cerevisiae. J Biol Chem 283: 9768–9775.

26. HirayamaT, MaedaT, SaitoH, ShinozakiK (1995) Cloning and characterization of seven cDNAs for hyperosmolarity-responsive (HOR) genes of Saccharomyces cerevisiae. Mol Gen Genet 249: 127–138.

27. Martinez-PastorMT, MarchlerG, SchullerC, Marchler-BauerA, RuisH, et al. (1996) The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE). Embo J 15: 2227–2235.

28. PereiraMD, EleutherioEC, PanekAD (2001) Acquisition of tolerance against oxidative damage in Saccharomyces cerevisiae. BMC Microbiol 1: 11.

29. TsujimotoY, IzawaS, InoueY (2000) Cooperative regulation of DOG2, encoding 2-deoxyglucose-6-phosphate phosphatase, by Snf1 kinase and the high-osmolarity glycerol-mitogen-activated protein kinase cascade in stress responses of Saccharomyces cerevisiae. J Bacteriol 182: 5121–5126.

30. SollnerS, NebauerR, EhammerH, PremA, DellerS, et al. (2007) Lot6p from Saccharomyces cerevisiae is a FMN-dependent reductase with a potential role in quinone detoxification. Febs J 274: 1328–1339.

31. ShimoiH, KitagakiH, OhmoriH, IimuraY, ItoK (1998) Sed1p is a major cell wall protein of Saccharomyces cerevisiae in the stationary phase and is involved in lytic enzyme resistance. J Bacteriol 180: 3381–3387.

32. LissinaE, YoungB, UrbanusML, GuanXL, LowensonJ, et al. (2011) A systems biology approach reveals the role of a novel methyltransferase in response to chemical stress and lipid homeostasis. PLoS Genet 7: e1002332.

33. VerseleM, TheveleinJM (2001) Lre1 affects chitinase expression, trehalose accumulation and heat resistance through inhibition of the Cbk1 protein kinase in Saccharomyces cerevisiae. Mol Microbiol 41: 1311–1326.

34. Huang daW, ShermanBT, LempickiRA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44–57.

35. LevinDE (2011) Regulation of cell wall biogenesis in Saccharomyces cerevisiae: the cell wall integrity signaling pathway. Genetics 189: 1145–1175.

36. JungUS, LevinDE (1999) Genome-wide analysis of gene expression regulated by the yeast cell wall integrity signalling pathway. Mol Microbiol 34: 1049–1057.

37. KaeberleinM, AndalisAA, FinkGR, GuarenteL (2002) High osmolarity extends life span in Saccharomyces cerevisiae by a mechanism related to calorie restriction. Mol Cell Biol 22: 8056–8066.

38. WeiM, FabrizioP, MadiaF, HuJ, GeH, et al. (2009) Tor1/Sch9-regulated carbon source substitution is as effective as calorie restriction in life span extension. PLoS Genet 5: e1000467.

39. McCormickMA, TsaiSY, KennedyBK (2011) TOR and ageing: a complex pathway for a complex process. Philos Trans R Soc Lond B Biol Sci 366: 17–27.

40. HansenM, TaubertS, CrawfordD, LibinaN, LeeSJ, et al. (2007) Lifespan extension by conditions that inhibit translation in Caenorhabditis elegans. Aging Cell 6: 95–110.

41. DavidDC, OllikainenN, TrinidadJC, CaryMP, BurlingameAL, et al. (2010) Widespread protein aggregation as an inherent part of aging in C. elegans. PLoS Biol 8: e1000450.

42. PoonHF, VaishnavRA, GetchellTV, GetchellML, ButterfieldDA (2006) Quantitative proteomics analysis of differential protein expression and oxidative modification of specific proteins in the brains of old mice. Neurobiol Aging 27: 1010–1019.

43. SquierTC (2001) Oxidative stress and protein aggregation during biological aging. Exp Gerontol 36: 1539–1550.

44. NaidooN (2009) The endoplasmic reticulum stress response and aging. Rev Neurosci 20: 23–37.

45. GardnerBM, WalterP (2011) Unfolded proteins are Ire1-activating ligands that directly induce the unfolded protein response. Science 333: 1891–1894.

46. RutkowskiDT, HegdeRS (2010) Regulation of basal cellular physiology by the homeostatic unfolded protein response. J Cell Biol 189: 783–794.

47. KaeberleinM, GuarenteL (2002) Saccharomyces cerevisiae MPT5 and SSD1 function in parallel pathways to promote cell wall integrity. Genetics 160: 83–95.

48. ValdiviesoMH, FerrarioL, VaiM, DuranA, PopoloL (2000) Chitin synthesis in a gas1 mutant of Saccharomyces cerevisiae. J Bacteriol 182: 4752–4757.

49. SingerMA, LindquistS (1998) Multiple effects of trehalose on protein folding in vitro and in vivo. Mol Cell 1: 639–648.

50. DunnCD, TamuraY, SesakiH, JensenRE (2008) Mgr3p and Mgr1p are adaptors for the mitochondrial i-AAA protease complex. Mol Biol Cell 19: 5387–5397.

51. NakaiM, EndoT, HaseT, MatsubaraH (1993) Intramitochondrial protein sorting. Isolation and characterization of the yeast MSP1 gene which belongs to a novel family of putative ATPases. J Biol Chem 268: 24262–24269.

52. FriedlanderR, JaroschE, UrbanJ, VolkweinC, SommerT (2000) A regulatory link between ER-associated protein degradation and the unfolded-protein response. Nat Cell Biol 2: 379–384.

53. SchuldinerM, CollinsSR, ThompsonNJ, DenicV, BhamidipatiA, et al. (2005) Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile. Cell 123: 507–519.

54. CurranSP, RuvkunG (2007) Lifespan regulation by evolutionarily conserved genes essential for viability. PLoS Genet 3: e56.

55. ShoreDE, CarrCE, RuvkunG (2012) Induction of cytoprotective pathways is central to the extension of lifespan conferred by multiple longevity pathways. PLoS Genet 8: e1002792.

56. ChenD, ThomasEL, KapahiP (2009) HIF-1 modulates dietary restriction-mediated lifespan extension via IRE-1 in Caenorhabditis elegans. PLoS Genet 5: e1000486.

57. Henis-KorenblitS, ZhangP, HansenM, McCormickM, LeeSJ, et al. (2010) Insulin/IGF-1 signaling mutants reprogram ER stress response regulators to promote longevity. Proc Natl Acad Sci U S A 107: 9730–9735.

58. TaylorRC, DillinA (2013) XBP-1 Is a Cell-Nonautonomous Regulator of Stress Resistance and Longevity. Cell 153: 1435–1447.

59. GiaeverG, ChuAM, NiL, ConnellyC, RilesL, et al. (2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature 418: 387–391.

60. BreslowDK, CameronDM, CollinsSR, SchuldinerM, Stewart-OrnsteinJ, et al. (2008) A comprehensive strategy enabling high-resolution functional analysis of the yeast genome. Nat Methods 5: 711–718.

61. SteffenKK, KennedyBK, KaeberleinM (2009) Measuring replicative life span in the budding yeast. J Vis Exp 28: pii: 1209.

62. GerashchenkoMV, LobanovAV, GladyshevVN (2012) Genome-wide ribosome profiling reveals complex translational regulation in response to oxidative stress. Proc Natl Acad Sci U S A 109: 17394–17399.

63. LangmeadB, TrapnellC, PopM, SalzbergSL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.

64. de HoonMJ, ImotoS, NolanJ, MiyanoS (2004) Open source clustering software. Bioinformatics 20: 1453–1454.

65. SaldanhaAJ (2004) Java Treeview–extensible visualization of microarray data. Bioinformatics 20: 3246–3248.

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Genetika Reprodukčná medicína

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PLOS Genetics


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