#PAGE_PARAMS# #ADS_HEAD_SCRIPTS# #MICRODATA#

Genomics Meets Glycomics—The First GWAS Study of Human N-Glycome Identifies HNF1α as a Master Regulator of Plasma Protein Fucosylation


Over half of all proteins are glycosylated, and alterations in glycosylation have been observed in numerous physiological and pathological processes. Attached glycans significantly affect protein function; but, contrary to polypeptides, they are not directly encoded by genes, and the complex processes that regulate their assembly are poorly understood. A novel approach combining genome-wide association and high-throughput glycomics analysis of 2,705 individuals in three population cohorts showed that common variants in the Hepatocyte Nuclear Factor 1α (HNF1α) and fucosyltransferase genes FUT6 and FUT8 influence N-glycan levels in human plasma. We show that HNF1α and its downstream target HNF4α regulate the expression of key fucosyltransferase and fucose biosynthesis genes. Moreover, we show that HNF1α is both necessary and sufficient to drive the expression of these genes in hepatic cells. These results reveal a new role for HNF1α as a master transcriptional regulator of multiple stages in the fucosylation process. This mechanism has implications for the regulation of immunity, embryonic development, and protein folding, as well as for our understanding of the molecular mechanisms underlying cancer, coronary heart disease, and metabolic and inflammatory disorders.


Vyšlo v časopise: Genomics Meets Glycomics—The First GWAS Study of Human N-Glycome Identifies HNF1α as a Master Regulator of Plasma Protein Fucosylation. PLoS Genet 6(12): e32767. doi:10.1371/journal.pgen.1001256
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1001256

Souhrn

Over half of all proteins are glycosylated, and alterations in glycosylation have been observed in numerous physiological and pathological processes. Attached glycans significantly affect protein function; but, contrary to polypeptides, they are not directly encoded by genes, and the complex processes that regulate their assembly are poorly understood. A novel approach combining genome-wide association and high-throughput glycomics analysis of 2,705 individuals in three population cohorts showed that common variants in the Hepatocyte Nuclear Factor 1α (HNF1α) and fucosyltransferase genes FUT6 and FUT8 influence N-glycan levels in human plasma. We show that HNF1α and its downstream target HNF4α regulate the expression of key fucosyltransferase and fucose biosynthesis genes. Moreover, we show that HNF1α is both necessary and sufficient to drive the expression of these genes in hepatic cells. These results reveal a new role for HNF1α as a master transcriptional regulator of multiple stages in the fucosylation process. This mechanism has implications for the regulation of immunity, embryonic development, and protein folding, as well as for our understanding of the molecular mechanisms underlying cancer, coronary heart disease, and metabolic and inflammatory disorders.


Zdroje

1. MarthJD

GrewalPK

2008 Mammalian glycosylation in immunity. Nature Reviews Immunology 8 874 887

2. DennisJW

LauKS

DemetriouM

NabiIR

2009 Adaptive Regulation at the Cell Surface by N-Glycosylation. Traffic 10 1569 1578

3. OhtsuboK

MarthJD

2006 Glycosylation in cellular mechanisms of health and disease. Cell 126 855 867

4. ApweilerR

HermjakobH

SharonN

1999 On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database. Biochimica et Biophysica Acta 1473 4 8

5. SkropetaD

2009 The effect of individual N-glycans on enzyme activity. Bioorganic & Medicinal Chemistry 17 2645 2653

6. HartGW

HousleyMP

SlawsonC

2007 Cycling of O-linked beta-N-acetylglucosamine on nucleocytoplasmic proteins. Nature 446 1017 1022

7. CrockerPR

PaulsonJC

VarkiA

2007 Siglecs and their roles in the immune system. Nature Reviews Immunology 7 255 266

8. BrownJR

CrawfordBE

EskoJD

2007 Glycan antagonists and inhibitors: a fount for drug discovery. Critical reviews in biochemistry and molecular biology 42 481 515

9. JaekenJ

2003 Komrower Lecture. Congenital disorders of glycosylation (CDG): it's all in it! J Inherit Metab Dis 26 99 118

10. FreezeHH

2006 Genetic defects in the human glycome. Nature Reviews Genetics 7 537 551

11. FreezeHH

2002 Human disorders in N-glycosylation and animal models. Biochimica et Biophysica Acta 1573 388 393

12. LaucG

RudanI

CampbellH

RuddPM

2010 Complex Genetic Regulation of Protein Glycosylation. Molecular Biosystems 6 329 335

13. RoyleL

CampbellMP

RadcliffeCM

WhiteDM

HarveyDJ

2008 HPLC-based analysis of serum N-glycans on a 96-well plate platform with dedicated database software. Analytical Biochemistry 376 1 12

14. RuddPM

RudanI

WrightAF

2009 High-Throughput Glycome Analysis Is Set To Join High-Throughput Genomics. Journal of Proteome Research 8 1105 1105

15. KneževićA

PolašekO

GornikO

RudanI

CampbellH

2009 Variability, Heritability and Environmental Determinants of Human Plasma N-Glycome. Journal of Proteome Research 8 694 701

16. GornikO

WagnerJ

PučićM

KneževićA

RedžićI

2009 Stability of N-glycan profiles in human plasma. Glycobiology 19 1547 1553

17. KneževićA

GornikO

PolašekO

PučićM

NovokmetM

2010 Effects of aging, body mass index, plasma lipid profiles, and smoking on human plasma N-glycans. Glycobiology 20 959 969

18. PučićM

PintoS

NovokmetM

KneževićA

GornikO

2010 Common aberrations from normal human N-glycan plasma profile. Glycobiology 20 970 975

19. BeckerDJ

LoweJB

2003 Fucose: biosynthesis and biological function in mammals. Glycobiology 13 41R 53R

20. TonettiM

SturlaL

BissoA

BenattiU

De FloraA

1996 Synthesis of GDP-L-fucose by the human FX protein. Journal of Biological Chemistry 271 27274 27279

21. JavaudC

DupuyF

MaftahA

JulienR

PetitJM

2003 The fucosyltransferase gene family: an amazing summary of the underlying mechanisms of gene evolution. Genetica 118 157 170

22. GornikO

LaucG

2008 Glycosylation of serum proteins in inflammatory diseases. Disease Markers 25 267 278

23. MiyoshiE

MoriwakiK

NakagawaT

2008 Biological function of fucosylation in cancer biology. Journal of Biochemistry 143 725 729

24. OdomDT

ZizlspergerN

GordonDB

BellGW

RinaldiNJ

2004 Control of pancreas and liver gene expression by HNF transcription factors. Science 303 1378 1381

25. YamagataK

FurutaH

OdaN

KaisakiPJ

MenzelS

1996 Mutations in the hepatocyte nuclear factor-4alpha gene in maturity-onset diabetes of the young (MODY1). Nature 384 458 460

26. YamagataK

OdaN

KaisakiPJ

MenzelS

FurutaH

1996 Mutations in the hepatocyte nuclear factor-1alpha gene in maturity-onset diabetes of the young (MODY3). Nature 384 455 458

27. ElliottP

ChambersJC

ZhangW

ClarkeR

HopewellJC

2009 Genetic Loci associated with C-reactive protein levels and risk of coronary heart disease. JAMA 302 37 48

28. YuanX

WaterworthD

PerryJR

LimN

SongK

2008 Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes. American Journal of Human Genetics 83 520 528

29. ReinerAP

GrossMD

CarlsonCS

BielinskiSJ

LangeLA

2009 Common coding variants of the HNF1A gene are associated with multiple cardiovascular risk phenotypes in community-based samples of younger and older European-American adults: the Coronary Artery Risk Development in Young Adults Study and The Cardiovascular Health Study. Circ Cardiovasc Genet 2 244 254

30. BarrettJC

LeeJC

LeesCW

PrescottNJ

AndersonCA

2009 Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region. Nature Genetics 41 1330 1334

31. KathiresanS

WillerCJ

PelosoGM

DemissieS

MusunuruK

2009 Common variants at 30 loci contribute to polygenic dyslipidemia. Nature Genetics 41 56 65

32. VitartV

RudanI

HaywardC

GrayNK

FloydJ

2008 SLC2A9 is a newly identified urate transporter influencing serum urate concentration, urate excretion and gout. Nature Genetics 40 437 442

33. TaniguchiN

HonkeK

FukudaM

2002 Handbook of glycosyltransferases and related genes. Tokyo Springer Verlag

34. Brinkman-Van der LindenEC

MolliconeR

OriolR

LarsonG

Van den EijndenDH

1996 A missense mutation in the FUT6 gene results in total absence of alpha3-fucosylation of human alpha1-acid glycoprotein. J Biol Chem 271 14492 14495

35. MaB

Simala-GrantJL

TaylorDE

2006 Fucosylation in prokaryotes and eukaryotes. Glycobiology 16 158R 184R

36. HigaiK

MiyazakiN

AzumaY

MatsumotoK

2008 Transcriptional regulation of the fucosyltransferase VI gene in hepatocellular carcinoma cells. Glycoconjugate Journal 25 225 235

37. ServitjaJM

PignatelliM

MaestroMA

CardaldaC

BojSF

2009 Hnf1alpha (MODY3) controls tissue-specific transcriptional programs and exerts opposed effects on cell growth in pancreatic islets and liver. Molecular & Cellular Biology 29 2945 2959

38. BojSF

PetrovD

FerrerJ

2010 Epistasis of transcriptomes reveals synergism between transcriptional activators Hnf1alpha and Hnf4alpha. PLoS Genet 6 e1000970 doi:10.1371/journal.pgen.1000970

39. BejeranoG

SiepelAC

KentWJ

HausslerD

2005 Computational screening of conserved genomic DNA in search of functional noncoding elements. Nature Methods 2 535 545

40. OdomDT

DowellRD

JacobsenES

GordonW

DanfordTW

2007 Tissue-specific transcriptional regulation has diverged significantly between human and mouse. Nat Genet 39 730 732

41. LootsG

OvcharenkoI

2007 ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes. Bioinformatics 23 122 124

42. BoydM

BressendorffS

MollerJ

OlsenJ

TroelsenJT

2009 Mapping of HNF4alpha target genes in intestinal epithelial cells. BMC Gastroenterol 9 68

43. BenkoS

FantesJA

AmielJ

KleinjanDJ

ThomasS

2009 Highly conserved non-coding elements on either side of SOX9 associated with Pierre Robin sequence. Nat Genet 41 359 364

44. EssafiA

Fernandez de MattosS

HassenYA

SoeiroI

MuftiGJ

2005 Direct transcriptional regulation of Bim by FoxO3a mediates STI571-induced apoptosis in Bcr-Abl-expressing cells. Oncogene 24 2317 2329

45. WithersDA

HakomoriSI

2000 Human alpha (1,3)-fucosyltransferase IV (FUTIV) gene expression is regulated by elk-1 in the U937 cell line. Journal of Biological Chemistry 275 40588 40593

46. ErdmannJ

GrosshennigA

BraundPS

KonigIR

HengstenbergC

2009 New susceptibility locus for coronary artery disease on chromosome 3q22.3. Nature Genetics 41 280 282

47. KelAE

NiehofM

MatysV

ZemlinR

BorlakJ

2008 Genome wide prediction of HNF4alpha functional binding sites by the use of local and global sequence context. Genome Biol 9 R36

48. BrandleyBK

KisoM

AbbasS

NikradP

SrivasatavaO

1993 Structure-function studies on selectin carbohydrate ligands. Modifications to fucose, sialic acid and sulphate as a sialic acid replacement. Glycobiology 3 633 641

49. LuhnK

MarquardtT

HarmsE

VestweberD

2001 Discontinuation of fucose therapy in LADII causes rapid loss of selectin ligands and rise of leukocyte counts. Blood 97 330 332

50. KleinA

2008 Human total serum N-glycome. Advances in Clinical Chemistry 46 51 85

51. RoyleL

RadcliffeCM

DwekRA

RuddPM

2006 Detailed structural analysis of N-glycans released from glycoproteins in SDS-PAGE gel bands using HPLC combined with exoglycosidase array digestions. Methods Mol Biol 347 125 143

52. CampbellMP

RoyleL

RadcliffeCM

DwekRA

RuddPM

2008 GlycoBase and autoGU: tools for HPLC-based glycan analysis. Bioinformatics 24 1214 1216

53. AulchenkoYS

RipkeS

IsaacsA

van DuijnCM

2007 GenABEL: an R library for genome-wide association analysis. Bioinformatics 23 1294 1296

54. ChenWM

AbecasisGR

2007 Family-based association tests for genomewide association scans. Am J Hum Genet 81 913 926

55. BarrettJC

FryB

MallerJ

DalyMJ

2005 Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21 263 265

56. JohnsonAD

HandsakerRE

PulitSL

NizzariMM

O'DonnellCJ

2008 SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap. Bioinformatics 24 2938 2939

57. SchaidDJ

RowlandCM

TinesDE

JacobsonRM

PolandGA

2002 Score tests for association between traits and haplotypes when linkage phase is ambiguous. Am J Hum Genet 70 425 434

58. AkaikeH

1974 New Look at Statistical-Model Identification. Ieee Transactions on Automatic Control AC19 716 723

Štítky
Genetika Reprodukčná medicína

Článok vyšiel v časopise

PLOS Genetics


2010 Číslo 12
Najčítanejšie tento týždeň
Najčítanejšie v tomto čísle
Kurzy

Zvýšte si kvalifikáciu online z pohodlia domova

Aktuální možnosti diagnostiky a léčby litiáz
nový kurz
Autori: MUDr. Tomáš Ürge, PhD.

Všetky kurzy
Prihlásenie
Zabudnuté heslo

Zadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.

Prihlásenie

Nemáte účet?  Registrujte sa

#ADS_BOTTOM_SCRIPTS#