Molecular Mechanisms of Hypoxic Responses via Unique Roles of Ras1, Cdc24 and Ptp3 in a Human Fungal Pathogen
When Cryptococcus neoformans, an environmental fungal pathogen, enters the human host, it encounters a low oxygen condition. The well conserved Ras1 and Cdc24 proteins are known for their key roles in maintenance of the actin cytoskeletal integrity in eukaryotic cells. In this work, we show a unique role of RAS1 and CDC24 in the growth of C. neoformans in a low oxygen environment. Actin polarization, however, appeared normal in the ras1Δ and cdc24Δ strains under hypoxic conditions for up to eight hours. We show that PTP3 is required for hypoxic growth and it can rescue the hypoxic growth defect in ras1Δ and cdc24Δ. Genetic analysis suggested that RAS1 and CDC24 function linearly while CDC24 and PTP3 function parallelly in regulating hypoxic growth. RNA sequencing combined with analysis by small molecular inhibitors revealed that RAS1, CDC24 and PTP3 regulate several biological processes such as ergosterol biosynthesis, chromosome organization, RNA processing and protein translation which are required in the cryptococcal response to hypoxic conditions.
Vyšlo v časopise:
Molecular Mechanisms of Hypoxic Responses via Unique Roles of Ras1, Cdc24 and Ptp3 in a Human Fungal Pathogen. PLoS Genet 10(4): e32767. doi:10.1371/journal.pgen.1004292
Kategorie:
Research Article
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.pgen.1004292
Souhrn
When Cryptococcus neoformans, an environmental fungal pathogen, enters the human host, it encounters a low oxygen condition. The well conserved Ras1 and Cdc24 proteins are known for their key roles in maintenance of the actin cytoskeletal integrity in eukaryotic cells. In this work, we show a unique role of RAS1 and CDC24 in the growth of C. neoformans in a low oxygen environment. Actin polarization, however, appeared normal in the ras1Δ and cdc24Δ strains under hypoxic conditions for up to eight hours. We show that PTP3 is required for hypoxic growth and it can rescue the hypoxic growth defect in ras1Δ and cdc24Δ. Genetic analysis suggested that RAS1 and CDC24 function linearly while CDC24 and PTP3 function parallelly in regulating hypoxic growth. RNA sequencing combined with analysis by small molecular inhibitors revealed that RAS1, CDC24 and PTP3 regulate several biological processes such as ergosterol biosynthesis, chromosome organization, RNA processing and protein translation which are required in the cryptococcal response to hypoxic conditions.
Zdroje
1. BienCM, EspenshadePJ (2010) Sterol regulatory element binding proteins in fungi: hypoxic transcription factors linked to pathogenesis. Eukaryot Cell 9: 352–359.
2. ButlerG (2013) Hypoxia and gene expression in eukaryotic microbes. Annu Rev Microbiol 67: 291–312.
3. GrahlN, ShepardsonKM, ChungD, CramerRA (2012) Hypoxia and fungal pathogenesis: to air or not to air? Eukaryot Cell 11: 560–570.
4. Gonzalez SisoMI, BecerraM, Lamas MaceirasM, Vizoso VazquezA, CerdanME (2012) The yeast hypoxic responses, resources for new biotechnological opportunities. Biotechnol Lett 34: 2161–2173.
5. ChangYC, BienCM, LeeH, EspenshadePJ, Kwon-ChungKJ (2007) Sre1p, a regulator of oxygen sensing and sterol homeostasis, is required for virulence in Cryptococcus neoformans. Mol Microbiol 64: 614–629.
6. ChunCD, LiuOW, MadhaniHD (2007) A link between virulence and homeostatic responses to hypoxia during infection by the human fungal pathogen Cryptococcus neoformans. PLoS Pathog 3: e22.
7. HughesAL, ToddBL, EspenshadePJ (2005) SREBP pathway responds to sterols and functions as an oxygen sensor in fission yeast. Cell 120: 831–842.
8. IngavaleSS, ChangYC, LeeH, McClellandCM, LeongML, et al. (2008) Importance of mitochondria in survival of Cryptococcus neoformans under low oxygen conditions and tolerance to cobalt chloride. PLoS Pathog 4: e1000155.
9. ChangYC, LamichhaneAK, Kwon-ChungKJ (2012) Role of actin-bundling protein Sac6 in growth of Cryptococcus neoformans at low oxygen concentration. Eukaryot Cell 11: 943–951.
10. HallA (1998) Rho GTPases and the actin cytoskeleton. Science 279: 509–514.
11. VojtekAB, DerCJ (1998) Increasing complexity of the Ras signaling pathway. J Biol Chem 273: 19925–19928.
12. ShieldsJM, PruittK, McFallA, ShaubA, DerCJ (2000) Understanding Ras: ‘it ain't over ‘til it's over’. Trends Cell Biol 10: 147–154.
13. HoJ, BretscherA (2001) Ras regulates the polarity of the yeast actin cytoskeleton through the stress response pathway. Mol Biol Cell 12: 1541–1555.
14. OnkenB, WienerH, PhilipsMR, ChangEC (2006) Compartmentalized signaling of Ras in fission yeast. Proc Natl Acad Sci U S A 103: 9045–9050.
15. HarispeL, PortelaC, ScazzocchioC, PenalvaMA, GorfinkielL (2008) Ras GTPase-activating protein regulation of actin cytoskeleton and hyphal polarity in Aspergillus nidulans. Eukaryot Cell 7: 141–153.
16. HallA, NobesCD (2000) Rho GTPases: molecular switches that control the organization and dynamics of the actin cytoskeleton. Philos Trans R Soc Lond B Biol Sci 355: 965–970.
17. WaughMS, NicholsCB, DeCesareCM, CoxGM, HeitmanJ, et al. (2002) Ras1 and Ras2 contribute shared and unique roles in physiology and virulence of Cryptococcus neoformans. Microbiology 148: 191–201.
18. AlspaughJA, CavalloLM, PerfectJR, HeitmanJ (2000) RAS1 regulates filamentation, mating and growth at high temperature of Cryptococcus neoformans. Mol Microbiol 36: 352–365.
19. NicholsCB, PerfectZH, AlspaughJA (2007) A Ras1-Cdc24 signal transduction pathway mediates thermotolerance in the fungal pathogen Cryptococcus neoformans. Mol Microbiol 63: 1118–1130.
20. VallimMA, NicholsCB, FernandesL, CramerKL, AlspaughJA (2005) A Rac homolog functions downstream of Ras1 to control hyphal differentiation and high-temperature growth in the pathogenic fungus Cryptococcus neoformans. Eukaryot Cell 4: 1066–1078.
21. PriceMS, NicholsCB, AlspaughJA (2008) The Cryptococcus neoformans Rho-GDP dissociation inhibitor mediates intracellular survival and virulence. Infect Immun 76: 5729–5737.
22. BallouER, NicholsCB, MigliaKJ, KozubowskiL, AlspaughJA (2010) Two CDC42 paralogues modulate Cryptococcus neoformans thermotolerance and morphogenesis under host physiological conditions. Mol Microbiol 75: 763–780.
23. BallouER, KozubowskiL, NicholsCB, AlspaughJA (2013) Ras1 acts through duplicated Cdc42 and Rac proteins to regulate morphogenesis and pathogenesis in the human fungal pathogen Cryptococcus neoformans. PLoS Genet 9: e1003687.
24. KaibuchiK, KurodaS, AmanoM (1999) Regulation of the cytoskeleton and cell adhesion by the Rho family GTPases in mammalian cells. Annu Rev Biochem 68: 459–486.
25. ChangEC, BarrM, WangY, JungV, XuHP, et al. (1994) Cooperative interaction of S. pombe proteins required for mating and morphogenesis. Cell 79: 131–141.
26. Wurgler-MurphySM, MaedaT, WittenEA, SaitoH (1997) Regulation of the Saccharomyces cerevisiae HOG1 mitogen-activated protein kinase by the PTP2 and PTP3 protein tyrosine phosphatases. Mol Cell Biol 17: 1289–1297.
27. WaughMS, VallimMA, HeitmanJ, AlspaughJA (2003) Ras1 controls pheromone expression and response during mating in Cryptococcus neoformans. Fungal Genet Biol 38: 110–121.
28. MaengS, KoYJ, KimGB, JungKW, FloydA, et al. (2010) Comparative transcriptome analysis reveals novel roles of the Ras and cyclic AMP signaling pathways in environmental stress response and antifungal drug sensitivity in Cryptococcus neoformans. Eukaryot Cell 9: 360–378.
29. RiedlJ, CrevennaAH, KessenbrockK, YuJH, NeukirchenD, et al. (2008) Lifeact: a versatile marker to visualize F-actin. Nat Methods 5: 605–607.
30. LeeJW, KoYJ, KimSY, BahnYS (2011) Multiple roles of Ypd1 phosphotransfer protein in viability, stress response, and virulence factor regulation in Cryptococcus neoformans. Eukaryot Cell 10: 998–1002.
31. BahnYS, KojimaK, CoxGM, HeitmanJ (2006) A unique fungal two-component system regulates stress responses, drug sensitivity, sexual development, and virulence of Cryptococcus neoformans. Mol Biol Cell 17: 3122–3135.
32. MattisonCP, OtaIM (2000) Two protein tyrosine phosphatases, Ptp2 and Ptp3, modulate the subcellular localization of the Hog1 MAP kinase in yeast. Genes Dev 14: 1229–1235.
33. MattisonCP, SpencerSS, KresgeKA, LeeJ, OtaIM (1999) Differential regulation of the cell wall integrity mitogen-activated protein kinase pathway in budding yeast by the protein tyrosine phosphatases Ptp2 and Ptp3. Mol Cell Biol 19: 7651–7660.
34. WinklerA, ArkindC, MattisonCP, BurkholderA, KnocheK, et al. (2002) Heat stress activates the yeast high-osmolarity glycerol mitogen-activated protein kinase pathway, and protein tyrosine phosphatases are essential under heat stress. Eukaryot Cell 1: 163–173.
35. HickmanMJ, SpattD, WinstonF (2011) The Hog1 mitogen-activated protein kinase mediates a hypoxic response in Saccharomyces cerevisiae. Genetics 188: 325–338.
36. BahnYS, KojimaK, CoxGM, HeitmanJ (2005) Specialization of the HOG pathway and its impact on differentiation and virulence of Cryptococcus neoformans. Mol Biol Cell 16: 2285–2300.
37. DennisGJr, ShermanBT, HosackDA, YangJ, GaoW, et al. (2003) DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol 4: P3.
38. Huang daW, ShermanBT, LempickiRA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44–57.
39. GiaeverG, FlahertyP, KummJ, ProctorM, NislowC, et al. (2004) Chemogenomic profiling: identifying the functional interactions of small molecules in yeast. Proc Natl Acad Sci U S A 101: 793–798.
40. YoshidaM, HorinouchiS, BeppuT (1995) Trichostatin A and trapoxin: novel chemical probes for the role of histone acetylation in chromatin structure and function. Bioessays 17: 423–430.
41. RiggsMG, WhittakerRG, NeumannJR, IngramVM (1977) n-Butyrate causes histone modification in HeLa and Friend erythroleukaemia cells. Nature 268: 462–464.
42. ChangJG, YangDM, ChangWH, ChowLP, ChanWL, et al. (2011) Small molecule amiloride modulates oncogenic RNA alternative splicing to devitalize human cancer cells. PLoS One 6: e18643.
43. SatoY, IchihashiT, NishizawaS, TeramaeN (2012) Strong and selective binding of amiloride to an abasic site in RNA duplexes: thermodynamic characterization and microRNA detection. Angew Chem Int Ed Engl 51: 6369–6372.
44. KaramanMW, HerrgardS, TreiberDK, GallantP, AtteridgeCE, et al. (2008) A quantitative analysis of kinase inhibitor selectivity. Nat Biotechnol 26: 127–132.
45. AukemaKG, ChohanKK, PlourdeGL, ReimerKB, RaderSD (2009) Small molecule inhibitors of yeast pre-mRNA splicing. ACS Chem Biol 4: 759–768.
46. Schneider-PoetschT, JuJ, EylerDE, DangY, BhatS, et al. (2010) Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin. Nat Chem Biol 6: 209–217.
47. ChernoffYO, VincentA, LiebmanSW (1994) Mutations in eukaryotic 18S ribosomal RNA affect translational fidelity and resistance to aminoglycoside antibiotics. EMBO J 13: 906–913.
48. SynnottJM, GuidaA, Mulhern-HaugheyS, HigginsDG, ButlerG (2010) Regulation of the hypoxic response in Candida albicans. Eukaryot Cell 9: 1734–1746.
49. JordanSN, CanmanJC (2012) Rho GTPases in animal cell cytokinesis: an occupation by the one percent. Cytoskeleton (Hoboken) 69: 919–930.
50. PerezP, RinconSA (2010) Rho GTPases: regulation of cell polarity and growth in yeasts. Biochem J 426: 243–253.
51. JohnsonDI, PringleJR (1990) Molecular characterization of CDC42, a Saccharomyces cerevisiae gene involved in the development of cell polarity. J Cell Biol 111: 143–152.
52. MillerPJ, JohnsonDI (1994) Cdc42p GTPase is involved in controlling polarized cell growth in Schizosaccharomyces pombe. Mol Cell Biol 14: 1075–1083.
53. GarciaP, TajaduraV, GarciaI, SanchezY (2006) Role of Rho GTPases and Rho-GEFs in the regulation of cell shape and integrity in fission yeast. Yeast 23: 1031–1043.
54. BienCM, ChangYC, NesWD, Kwon-ChungKJ, EspenshadePJ (2009) Cryptococcus neoformans Site-2 protease is required for virulence and survival in the presence of azole drugs. Mol Microbiol 74: 672–690.
55. ChangYC, IngavaleSS, BienC, EspenshadeP, Kwon-ChungKJ (2009) Conservation of the sterol regulatory element-binding protein pathway and its pathobiological importance in Cryptococcus neoformans. Eukaryot Cell 8: 1770–1779.
56. OstmanA, HellbergC, BohmerFD (2006) Protein-tyrosine phosphatases and cancer. Nat Rev Cancer 6: 307–320.
57. TonksNK (2006) Protein tyrosine phosphatases: from genes, to function, to disease. Nat Rev Mol Cell Biol 7: 833–846.
58. SandinA, DagnellM, GononA, PernowJ, StanglV, et al. (2011) Hypoxia followed by re-oxygenation induces oxidation of tyrosine phosphatases. Cell Signal 23: 820–826.
59. KouzaridesT (2007) Chromatin modifications and their function. Cell 128: 693–705.
60. LandoD, BalmerJ, LaueED, KouzaridesT (2012) The S. pombe histone H2A dioxygenase Ofd2 regulates gene expression during hypoxia. PLoS One 7: e29765.
61. GerbasiVR, WeaverCM, HillS, FriedmanDB, LinkAJ (2004) Yeast Asc1p and mammalian RACK1 are functionally orthologous core 40S ribosomal proteins that repress gene expression. Mol Cell Biol 24: 8276–8287.
62. LeeH, BienCM, HughesAL, EspenshadePJ, Kwon-ChungKJ, et al. (2007) Cobalt chloride, a hypoxia-mimicking agent, targets sterol synthesis in the pathogenic fungus Cryptococcus neoformans. Mol Microbiol 65: 1018–1033.
63. ToffalettiDL, RudeTH, JohnstonSA, DurackDT, PerfectJR (1993) Gene transfer in Cryptococcus neoformans by use of biolistic delivery of DNA. J Bacteriol 175: 1405–1411.
64. KuwayamaH, ObaraS, MorioT, KatohM, UrushiharaH, et al. (2002) PCR-mediated generation of a gene disruption construct without the use of DNA ligase and plasmid vectors. Nucleic Acids Res 30: E2.
65. TrapnellC, WilliamsBA, PerteaG, MortazaviA, KwanG, et al. (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28: 511–515.
66. NesWD, ZhouW, GanapathyK, LiuJ, VatsyayanR, et al. (2009) Sterol 24-C-methyltransferase: an enzymatic target for the disruption of ergosterol biosynthesis and homeostasis in Cryptococcus neoformans. Arch Biochem Biophys 481: 210–218.
67. ChangYC, Kwon-ChungKJ (1994) Complementation of a capsule-deficient mutation of Cryptococcus neoformans restores its virulence. Mol Cell Biol 14: 4912–4919.
68. ZhaoS, FernaldRD (2005) Comprehensive algorithm for quantitative real-time polymerase chain reaction. J Comput Biol 12: 1047–1064.
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Genetika Reprodukčná medicínaČlánok vyšiel v časopise
PLOS Genetics
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