Three Different Pathways Prevent Chromosome Segregation in the Presence of DNA Damage or Replication Stress in Budding Yeast
Genetic inheritance during cell proliferation requires chromosome duplication (replication) and segregation of the replicated chromosomes to the two daughter cells. In response to the presence of DNA damage, cells block chromosome segregation to avoid the inheritance of damaged, incompletely replicated chromosomes. Failure to do so results in loss of genomic integrity. Here we show that three different, redundant pathways are responsible for such control in budding yeast, a model eukaryotic organism. One of the pathways had been described before and blocks the separation of the replicated chromosomes. We show now that two additional pathways inhibit the essential pro-mitotic Cyclin Dependent Kinase (M-CDK) activity. One of them involves the conserved inhibition of M-CDK through tyrosine phosphorylation, which was puzzlingly dispensable in the response to challenged replication in budding yeast. We show that the reason for such dispensability is the existence of redundant control of M-CDK activity by Rad53. Rad53 is part of a surveillance mechanism termed the S phase checkpoint that detects and responds to replication insults. Such control mechanism has been proposed to constitute an anti-cancer barrier in human cells.
Vyšlo v časopise:
Three Different Pathways Prevent Chromosome Segregation in the Presence of DNA Damage or Replication Stress in Budding Yeast. PLoS Genet 11(9): e32767. doi:10.1371/journal.pgen.1005468
Kategorie:
Research Article
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.pgen.1005468
Souhrn
Genetic inheritance during cell proliferation requires chromosome duplication (replication) and segregation of the replicated chromosomes to the two daughter cells. In response to the presence of DNA damage, cells block chromosome segregation to avoid the inheritance of damaged, incompletely replicated chromosomes. Failure to do so results in loss of genomic integrity. Here we show that three different, redundant pathways are responsible for such control in budding yeast, a model eukaryotic organism. One of the pathways had been described before and blocks the separation of the replicated chromosomes. We show now that two additional pathways inhibit the essential pro-mitotic Cyclin Dependent Kinase (M-CDK) activity. One of them involves the conserved inhibition of M-CDK through tyrosine phosphorylation, which was puzzlingly dispensable in the response to challenged replication in budding yeast. We show that the reason for such dispensability is the existence of redundant control of M-CDK activity by Rad53. Rad53 is part of a surveillance mechanism termed the S phase checkpoint that detects and responds to replication insults. Such control mechanism has been proposed to constitute an anti-cancer barrier in human cells.
Zdroje
1. Weinert TA, Kiser GL, Hartwell LH. Mitotic checkpoint genes in budding yeast and the dependence of mitosis on DNA replication and repair. Genes Dev. 1994;8: 652–665. 7926756
2. Allen JB, Zhou Z, Siede W, Friedberg EC, Elledge SJ. The SAD1/RAD53 protein kinase controls multiple checkpoints and DNA damage-induced transcription in yeast. Genes Dev. 77030.; 1994;8: 2401–2415. 7958905
3. Bartkova J, Rezaei N, Liontos M, Karakaidos P, Kletsas D, Issaeva N, et al. Oncogene-induced senescence is part of the tumorigenesis barrier imposed by DNA damage checkpoints. Nature. 2006;444: 633–637. 17136093
4. Bartkova J, Horejsi Z, Koed K, Kramer A, Tort F, Zieger K, et al. DNA damage response as a candidate anti-cancer barrier in early human tumorigenesis. Nature. 2005;434: 864–870. 15829956
5. Gorgoulis VG, Vassiliou L V, Karakaidos P, Zacharatos P, Kotsinas A, Liloglou T, et al. Activation of the DNA damage checkpoint and genomic instability in human precancerous lesions. Nature. 2005;434: 907–913. 15829965
6. Bartek J, Bartkova J, Lukas J. DNA damage signalling guards against activated oncogenes and tumour progression. Oncogene. 2007;26: 7773–7779. 18066090
7. Enoch T, Nurse P. Mutation of fission yeast cell cycle control genes abolishes dependence of mitosis on DNA replication. Cell. 1990;60: 665–673. 2406029
8. Rhind N, Furnari B, Russell P. Cdc2 tyrosine phosphorylation is required for the DNA damage checkpoint in fission yeast. Genes Dev. 1997;11: 504–511. 9042863
9. Rhind N, Russell P. Tyrosine phosphorylation of cdc2 is required for the replication checkpoint in Schizosaccharomyces pombe. Mol Cell Biol. 1998;18: 3782–3787. 9632761
10. Baber-Furnari BA, Rhind N, Boddy MN, Shanahan P, Lopez-Girona A, Russell P. Regulation of mitotic inhibitor Mik1 helps to enforce the DNA damage checkpoint. Mol Biol Cell. 2000;11: 1–11. 10637286
11. McGowan CH, Russell P. Human Wee1 kinase inhibits cell division by phosphorylating p34cdc2 exclusively on Tyr15. EMBO J. 1993;12: 75–85. 8428596
12. Gould KL, Nurse P. Tyrosine phosphorylation of the fission yeast cdc2+ protein kinase regulates entry into mitosis. Nature. 1989;342: 39–45. 2682257
13. Lundgren K, Walworth N, Booher R, Dembski M, Kirschner M, Beach D. Mik1 and Wee1 Cooperate in the Inhibitory Tyrosine Phosphorylation of Cdc2. Cell. 1991;64: 1111–1122. 1706223
14. Dunphy WG, Newport JW. Fission yeast p13 blocks mitotic activation and tyrosine dephosphorylation of the Xenopus cdc2 protein kinase. Cell. 1989;58: 181–191. 2473838
15. Gautier J, Matsukawa T, Nurse P, Maller J. Dephosphorylation and activation of Xenopus p34cdc2 protein kinase during the cell cycle. Nature. 1989;339: 626–629. 2543932
16. Draetta G, Beach D. Activation of cdc2 protein kinase during mitosis in human cells: cell cycle-dependent phosphorylation and subunit rearrangement. Cell. 1988;54: 17–26. 3289755
17. Draetta G, Piwnica-Worms H, Morrison D, Druker B, Roberts T, Beach D. Human cdc2 protein kinase is a major cell-cycle regulated tyrosine kinase substrate. Nature. 1988;336: 738–744. 2462672
18. Morla AO, Draetta G, Beach D, Wang JY. Reversible tyrosine phosphorylation of cdc2: dephosphorylation accompanies activation during entry into mitosis. Cell. 1989;58: 193–203. 2473839
19. Solomon MJ, Glotzer M, Lee TH, Philippe M, Kirschner MW. Cyclin activation of p34cdc2. Cell. 1990;63: 1013–1024. 2147872
20. Sorger PK, Murray AW. S-phase feedback control in budding yeast independent of tyrosine phosphorylation of p34cdc28. Nature. 1992;355: 365–368. 1731250
21. Amon A, Surana U, Muroff I, Nasmyth K. Regulation of p34CDC28 tyrosine phosphorylation is not required for entry into mitosis in S. cerevisiae. Nature. 1992;355: 368–371. 1731251
22. Stueland CS, Lew DJ, Cismowski MJ, Reed SI. Full activation of p34CDC28 histone H1 kinase activity is unable to promote entry into mitosis in checkpoint-arrested cells of the yeast Saccharomyces cerevisiae. Mol Cell Biol. 1993;13: 3744–3755. 8388545
23. Yamamoto A, Guacci V, Koshland D. Pds1p, an inhibitor of anaphase in budding yeast, plays a critical role in the APC and checkpoint pathway(s). J Cell Biol. 1996;133: 99–110. 8601617
24. Cohen-Fix O, Koshland D. The anaphase inhibitor of Saccharomyces cerevisiae Pds1p is a target of the DNA damage checkpoint pathway. Proc Natl Acad Sci U S A. 1997;94: 14361–14366. 9405617
25. Gardner R, Putnam CW, Weinert T. RAD53, DUN1 and PDS1 define two parallel G2/M checkpoint pathways in budding yeast. EMBO J. 1999;18: 3173–3185. 10357828
26. Sanchez Y, Bachant J, Wang H, Hu F, Liu D, Tetzlaff M, et al. Control of the DNA damage checkpoint by chk1 and rad53 protein kinases through distinct mechanisms. Science. 1999;286: 1166–1171. 10550056
27. Wang H, Liu D, Wang Y, Qin J, Elledge SJ. Pds1 phosphorylation in response to DNA damage is essential for its DNA damage checkpoint function. Genes Dev. 2001;15: 1361–1372. 11390356
28. Agarwal R, Tang Z, Yu H, Cohen-Fix O. Two distinct pathways for inhibiting pds1 ubiquitination in response to DNA damage. J Biol Chem. 2003;278: 45027–45033. 12947083
29. Ciosk R, Zachariae W, Michaelis C, Shevchenko A, Mann M, Nasmyth K. An ESP1/PDS1 complex regulates loss of sister chromatid cohesion at the metaphase to anaphase transition in yeast. Cell. 1998;93: 1067–76. 9635435
30. Uhlmann F, Lottspeich F, Nasmyth K. Sister-chromatid separation at anaphase onset is promoted by cleavage of the cohesin subunit Scc1. Nature. 1999;400: 37–42. 10403247
31. Clarke DJ, Segal M, Mondesert G, Reed SI. The Pds1 anaphase inhibitor and Mec1 kinase define distinct checkpoints coupling S phase with mitosis in budding yeast. Curr Biol. 1999;9: 365–368. 10209118
32. Liu H, Wang Y. The function and regulation of budding yeast Swe1 in response to interrupted DNA synthesis. Mol Biol Cell. 2006;17: 2746–2756. 16571676
33. Foiani M, Liberi G, Lucchini G, Plevani P. Cell cycle-dependent phosphorylation and dephosphorylation of the yeast DNA polymerase alpha-primase B subunit. Mol Cell Biol. 1995;15: 883–891. 7823954
34. Tanaka S, Diffley JFX. Deregulated G1-cyclin expression induces genomic instability by preventing efficient pre-RC formation. Genes Dev. 2002;16: 2639–49. 12381663
35. Rahal R, Amon A. Mitotic CDKs control the metaphase-anaphase transition and trigger spindle elongation. Genes Dev. 2008;22: 1534–1548. doi: 10.1101/gad.1638308 18519644
36. Clotet J, Escoté X, Adrover MA, Yaakov G, Garí E, Aldea M, et al. Phosphorylation of Hsl1 by Hog1 leads to a G2 arrest essential for cell survival at high osmolarity. EMBO J. 2006;25: 2338–2346. 16688223
37. Gasch AP, Huang M, Metzner S, Botstein D, Elledge SJ, Brown PO. Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p. Mol Biol Cell. 2001;12: 2987–3003. 11598186
38. Yelamanchi SK, Veis J, Anrather D, Klug H, Ammerer G. Genotoxic stress prevents Ndd1-dependent transcriptional activation of G2/M-specific genes in Saccharomyces cerevisiae. Mol Cell Biol. 2014;34: 711–24. doi: 10.1128/MCB.01090-13 24324010
39. Edenberg ER, Mark KG, Toczyski DP. Ndd1 Turnover by SCFGrr1 Is Inhibited by the DNA Damage Checkpoint in Saccharomyces cerevisiae. PLOS Genet. 2015;11: e1005162. doi: 10.1371/journal.pgen.1005162 25894965
40. Edenberg ER, Vashisht A, Benanti JA, Wohlschlegel J, Toczyski DP. Rad53 downregulates mitotic gene transcription by inhibiting the transcriptional activator Ndd1. Mol Cell Biol. 2014;34: 725–38. doi: 10.1128/MCB.01056-13 24324011
41. Jaehnig EJ, Kuo D, Hombauer H, Ideker TG, Kolodner RD. Checkpoint kinases regulate a global network of transcription factors in response to DNA damage. Cell Rep. 2013;4: 174–88. doi: 10.1016/j.celrep.2013.05.041 23810556
42. Maas NL, Miller KM, DeFazio LG, Toczyski DP. Cell cycle and checkpoint regulation of histone H3 K56 acetylation by Hst3 and Hst4. Mol Cell. 2006;23: 109–19. 16818235
43. Russell P, Nurse P. Cdc25+ Functions as an Inducer in the Mitotic Control of Fission Yeast. Cell. 1986;45: 145–153. 3955656
44. Cid VJ, Jiménez J, Molina M, Sánchez M, Nombela C, Thorner JW. Orchestrating the cell cycle in yeast: sequential localization of key mitotic regulators at the spindle pole and the bud neck. Microbiology. 2002;148: 2647–2659. 12213912
45. Lew DJ. The morphogenesis checkpoint: How yeast cells watch their figures. Current Opinion in Cell Biology. 2003. pp. 648–653. 14644188
46. Lianga N, Williams EC, Kennedy EK, Doré C, Pilon S, Girard SL, et al. A Wee1 checkpoint inhibits anaphase onset. J Cell Biol. 2013;201: 843–62. doi: 10.1083/jcb.201212038 23751495
47. Rupes I. Checking cell size in yeast. Trends in Genetics. 2002. pp. 479–485. 12175809
48. Harvey SL, Kellogg DR. Conservation of mechanisms controlling entry into mitosis: Budding yeast wee1 delays entry into mitosis and is required for cell size control. Curr Biol. 2003;13: 264–275. 12593792
49. Harvey SL, Charlet A, Haas W, Gygi SP, Kellogg DR. Cdk1-dependent regulation of the mitotic inhibitor Wee1. Cell. 2005;122: 407–420. 16096060
50. Sheu YJ, Barral Y, Snyder M. Polarized growth controls cell shape and bipolar bud site selection in Saccharomyces cerevisiae. Mol Cell Biol. 2000;20: 5235–47. 10866679
51. Booher RN, Deshaies RJ, Kirschner MW. Properties of Saccharomyces cerevisiae wee1 and its differential regulation of p34CDC28 in response to G1 and G2 cyclins. Embo J. 1993;12: 3417–3426. 8253069
52. Surana U, Robitsch H, Price C, Schuster T, Fitch I, Futcher AB, et al. The role of CDC28 and cyclins during mitosis in the budding yeast S. cerevisiae. Cell. Research Institute of Molecular Pathology, Vienna, Austria.; 1991;65: 145–161. 1849457
53. Richardson H, Lew DJ, Henze M, Sugimoto K, Reed SI. Cyclin-B homologs in Saccharomyces cerevisiae function in S phase and in G2. Genes Dev. 1992;6: 2021–2034. 1427070
54. Paulovich AG, Hartwell LH. A checkpoint regulates the rate of progression through S phase in S. cerevisiae in response to DNA damage. Cell. 1995;82: 841–847. 7671311
55. Lopes M, Cotta-Ramusino C, Pellicioli A, Liberi G, Plevani P, Muzi-Falconi M, et al. The DNA replication checkpoint response stabilizes stalled replication forks. Nature. 2001;412: 557–561. 11484058
56. Tercero JA, Diffley JF. Regulation of DNA replication fork progression through damaged DNA by the Mec1/Rad53 checkpoint. Nature. 2001;412: 553–557. 11484057
57. Agarwal R, Cohen-Fix O. Phosphorylation of the mitotic regulator Pds1/securin by Cdc28 is required for efficient nuclear localization of Esp1/separase. Genes Dev. 2002;16: 1371–82. 12050115
58. Hsu W-S, Erickson SL, Tsai H-J, Andrews CA, Vas AC, Clarke DJ. S-phase cyclin-dependent kinases promote sister chromatid cohesion in budding yeast. Mol Cell Biol. 2011;31: 2470–83. doi: 10.1128/MCB.05323-11 21518961
59. Higuchi T, Uhlmann F. Stabilization of microtubule dynamics at anaphase onset promotes chromosome segregation. Nature. 2005;433: 171–6. 15650742
60. Jin P, Gu Y, Morgan DO. Role of inhibitory CDC2 phosphorylation in radiation-induced G2 arrest in human cells. J Cell Biol. 1996;134: 963–970. 8769420
61. Oikonomou C, Cross FR. Rising cyclin-CDK levels order cell cycle events. PLoS One. 2011;6: e20788. doi: 10.1371/journal.pone.0020788 21695202
62. Coudreuse D, Nurse P. Driving the cell cycle with a minimal CDK control network. Nature. 2010;468: 1074–1079. doi: 10.1038/nature09543 21179163
63. Rudner AD, Hardwick KG, Murray AW. Cdc28 activates exit from mitosis in budding yeast. J Cell Biol. 2000;149: 1361–76. 10871278
64. Rudner AD, Murray AW. Phosphorylation by Cdc28 activates the Cdc20-dependent activity of the anaphase-promoting complex. J Cell Biol. 2000;149: 1377–90. 10871279
65. Liang H, Lim HH, Venkitaraman A, Surana U. Cdk1 promotes kinetochore bi-orientation and regulates Cdc20 expression during recovery from spindle checkpoint arrest. EMBO J. 2012;31: 403–416. doi: 10.1038/emboj.2011.385 22056777
66. Sanchez-Diaz A, Nkosi PJ, Murray S, Labib K. The Mitotic Exit Network and Cdc14 phosphatase initiate cytokinesis by counteracting CDK phosphorylations and blocking polarised growth. EMBO J. 2012;31: 3620–3634. doi: 10.1038/emboj.2012.224 22872148
67. Dotiwala F, Haase J, Arbel-Eden A, Bloom K, Haber JE. The yeast DNA damage checkpoint proteins control a cytoplasmic response to DNA damage. Proc Natl Acad Sci U S A. 2007;104: 11358–63. 17586685
68. Thomas BJ, Rothstein R. Elevated recombination rates in transcriptionally active DNA. Cell. 1989;56: 619–630. 2645056
69. Travesa A, Duch A, Quintana DG. Distinct phosphatases mediate the deactivation of the DNA damage checkpoint kinase Rad53. J Biol Chem. 2008;283: 17123–17130. doi: 10.1074/jbc.M801402200 18441009
70. Duch A, Palou G, Jonsson ZO, Palou R, Calvo E, Wohlschlegel J, et al. A Dbf4 mutant contributes to bypassing the Rad53-mediated block of origins of replication in response to genotoxic stress. J Biol Chem. 2011;286: 2486–2491. doi: 10.1074/jbc.M110.190843 21098477
71. Palou G, Palou R, Guerra-Moreno A, Duch A, Travesa A, Quintana DG. Cyclin regulation by the s phase checkpoint. J Biol Chem. 2010;285: 26431–26440. doi: 10.1074/jbc.M110.138669 20538605
72. Foiani M, Marini F, Gamba D, Lucchini G, Plevani P. The B subunit of the DNA polymerase alpha-primase complex in Saccharomyces cerevisiae executes an essential function at the initial stage of DNA replication. Mol Cell Biol. 1994;14: 923–933. 8289832
73. Woods A, Sherwin T, Sasse R, MacRae TH, Baines AJ, Gull K. Definition of individual components within the cytoskeleton of Trypanosoma brucei by a library of monoclonal antibodies. J Cell Sci. 1989;93 (Pt 3): 491–500.
74. Wang Q, Barshop WD, Bian M, Vashisht AA, He R, Yu X, et al. The Blue Light-Dependent Phosphorylation of the CCE Domain Determines the Photosensitivity of Arabidopsis CRY2. Mol Plant. 2015;8: 631–43. doi: 10.1016/j.molp.2015.03.005 25792146
75. Bermudez-Lopez M, Ceschia A, de Piccoli G, Colomina N, Pasero P, Aragon L, et al. The Smc5/6 complex is required for dissolution of DNA-mediated sister chromatid linkages. Nucleic Acids Res. 2010;38: 6502–6512. doi: 10.1093/nar/gkq546 20571088
76. Garber PM, Rine J. Overlapping roles of the spindle assembly and DNA damage checkpoints in the cell-cycle response to altered chromosomes in Saccharomyces cerevisiae. Genetics. 2002;161: 521–34. 12072451
Štítky
Genetika Reprodukčná medicínaČlánok vyšiel v časopise
PLOS Genetics
2015 Číslo 9
- Gynekologové a odborníci na reprodukční medicínu se sejdou na prvním virtuálním summitu
- Je „freeze-all“ pro všechny? Odborníci na fertilitu diskutovali na virtuálním summitu
Najčítanejšie v tomto čísle
- Arabidopsis AtPLC2 Is a Primary Phosphoinositide-Specific Phospholipase C in Phosphoinositide Metabolism and the Endoplasmic Reticulum Stress Response
- Bridges Meristem and Organ Primordia Boundaries through , , and during Flower Development in
- KLK5 Inactivation Reverses Cutaneous Hallmarks of Netherton Syndrome
- The Chromatin Protein DUET/MMD1 Controls Expression of the Meiotic Gene during Male Meiosis in