Phylodynamics and Human-Mediated Dispersal of a Zoonotic Virus
Understanding the role of humans in the dispersal of predominately animal pathogens is essential for their control. We used newly developed Bayesian phylogeographic methods to unravel the dynamics and determinants of the spread of dog rabies virus (RABV) in North Africa. Each of the countries studied exhibited largely disconnected spatial dynamics with major geo-political boundaries acting as barriers to gene flow. Road distances proved to be better predictors of the movement of dog RABV than accessibility or raw geographical distance, with occasional long distance and rapid spread within each of these countries. Using simulations that bridge phylodynamics and spatial epidemiology, we demonstrate that the contemporary viral distribution extends beyond that expected for RABV transmission in African dog populations. These results are strongly supportive of human-mediated dispersal, and demonstrate how an integrated phylogeographic approach will turn viral genetic data into a powerful asset for characterizing, predicting, and potentially controlling the spatial spread of pathogens.
Vyšlo v časopise:
Phylodynamics and Human-Mediated Dispersal of a Zoonotic Virus. PLoS Pathog 6(10): e32767. doi:10.1371/journal.ppat.1001166
Kategorie:
Research Article
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.ppat.1001166
Souhrn
Understanding the role of humans in the dispersal of predominately animal pathogens is essential for their control. We used newly developed Bayesian phylogeographic methods to unravel the dynamics and determinants of the spread of dog rabies virus (RABV) in North Africa. Each of the countries studied exhibited largely disconnected spatial dynamics with major geo-political boundaries acting as barriers to gene flow. Road distances proved to be better predictors of the movement of dog RABV than accessibility or raw geographical distance, with occasional long distance and rapid spread within each of these countries. Using simulations that bridge phylodynamics and spatial epidemiology, we demonstrate that the contemporary viral distribution extends beyond that expected for RABV transmission in African dog populations. These results are strongly supportive of human-mediated dispersal, and demonstrate how an integrated phylogeographic approach will turn viral genetic data into a powerful asset for characterizing, predicting, and potentially controlling the spatial spread of pathogens.
Zdroje
1. KnobelDL
CleavelandS
ColemanPG
FevreEM
MeltzerMI
2005 Re-evaluating the burden of rabies in Africa and Asia. Bull World Health Organ 83 360 368
2. CleavelandS
MeslinFX
BreimanR
2006 Dogs can play useful role as sentinel hosts for disease. Nature 440 605
3. FevreEM
KaboyoRW
PerssonV
EdelstenM
ColemanPG
2005 The epidemiology of animal bite injuries in Uganda and projections of the burden of rabies. Trop Med Int Health 10 790 798
4. LyS
BuchyP
HengNY
OngS
ChhorN
2009 Rabies situation in cambodia. PLoS Negl Trop Dis 3 e511
5. NelLH
RupprechtCE
2007 Emergence of lyssaviruses in the Old World: the case of Africa. Curr Top Microbiol Immunol 315 161 193
6. BourhyH
ReynesJM
DunhamEJ
DacheuxL
LarrousF
2008 The origin and phylogeography of dog rabies virus. J Gen Virol 89 2673 2681
7. TalbiC
HolmesEC
de BenedictisP
FayeO
NakouneE
2009 Evolutionary history and dynamics of dog rabies virus in western and central Africa. J Gen Virol 90 783 791
8. LemeyP
RambautA
DrummondAJ
SuchardMA
2009 Bayesian phylogeography finds its roots. PLoS Comput Biol 5 e1000520
9. BiekR
HendersonJC
WallerLA
RupprechtCE
RealLA
2007 A high-resolution genetic signature of demographic and spatial expansion in epizootic rabies virus. Proc Natl Acad Sci U S A 104 7993 7998
10. BourhyH
KissiB
AudryL
SmreczakM
Sadkowska-TodysM
1999 Ecology and evolution of rabies virus in Europe. J Gen Virol 80 ( Pt 10) 2545 2557
11. RealLA
BiekR
2007 Spatial dynamics and genetics of infectious diseases on heterogeneous landscapes. J R Soc Interface 4 935 948
12. RealLA
HendersonJC
BiekR
SnamanJ
JackTL
2005 Unifying the spatial population dynamics and molecular evolution of epidemic rabies virus. Proc Natl Acad Sci U S A 102 12107 12111
13. DrummondAJ
RambautA
2007 BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7 214
14. Ben NéfissaK
MoulinAM
DellagiK
2007 La rage en Tunisie au XIX siècle: recrudescence ou émergence? Gesnerus 64 173 192
15. WangTH
DonaldsonYK
BrettleRP
BellJE
SP
2001 Identification of shared populations of human immunodeficiency virus type 1 infecting microglia and tissue macrophages outside the central nervous system. J Virol 75 11686 11699
16. GrayRR
TatemAJ
LamersS
HouW
LaeyendeckerO
2009 Spatial phylodynamics of HIV-1 epidemic emergence in east Africa. Aids 23 F9 F17
17. McRaeBH
BeierP
2007 Circuit theory predicts gene flow in plant and animal populations. Proc Natl Acad Sci U S A 104 19885 19890
18. BalkDL
DeichmannU
YetmanG
PozziF
HaySI
2006 Determining global population distribution: methods, applications and data. Adv Parasitol 62 119 156
19. MininVN
SuchardM
2008 Counting labeled transitions in continuous-time Markov models of evolution. Journal of Mathematical Biology 56 391 412
20. HampsonK
DushoffJ
BinghamJ
BrucknerG
AliYH
2007 Synchronous cycles of domestic dog rabies in sub-Saharan Africa and the impact of control efforts. Proc Natl Acad Sci U S A 104 7717 7722
21. HampsonK
DushoffJ
CleavelandS
HaydonDT
KaareM
2009 Transmission dynamics and prospects for the elimination of canine rabies. PLoS Biol 7 e53
22. KitalaPM
McDermottJJ
ColemanPG
DyeC
2002 Comparison of vaccination strategies for the control of dog rabies in Machakos District, Kenya. Epidemiol Infect 129 215 222
23. WandelerAI
MatterHC
KappelerA
BuddeA
1993 The ecology of dogs and canine rabies: a selective review. Rev Sci Tech 12 51 71
24. ZinsstagJ
DurrS
PennyMA
MindekemR
RothF
2009 Transmission dynamics and economics of rabies control in dogs and humans in an African city. Proc Natl Acad Sci U S A 106 14996 15001
25. JenkinsSR
WinklerWG
1987 Descriptive epidemiology from an epizootic of raccoon rabies in the Middle Atlantic States, 1982–1983. Am J Epidemiol 126 429 437
26. WindiyaningsihC
WildeH
MeslinFX
SurosoT
WidarsoHS
2004 The rabies epidemic on Flores Island, Indonesia (1998–2003). J Med Assoc Thai 87 1389 1393
27. BourhyH
DacheuxL
StradyC
MaillesA
2005 Rabies in Europe in 2005. Euro Surveill 10 213 216
28. CleavelandS
KaareM
TiringaP
MlengeyaT
BarratJ
2003 A dog rabies vaccination campaign in rural Africa: impact on the incidence of dog rabies and human dog-bite injuries. Vaccine 21 1965 1973
29. ColemanPG
FevreEM
CleavelandS
2004 Estimating the public health impact of rabies. Emerg Infect Dis 10 140 142
30. KayaliU
MindekemR
HuttonG
NdoutamiaAG
ZinsstagJ
2006 Cost-description of a pilot parenteral vaccination campaign against rabies in dogs in N'Djamena, Chad. Trop Med Int Health 11 1058 1065
31. LardonZ
WatierF
BrunetA
BernèdeC
GoudalM
2010 Imported Episodic Rabies Increases Patient Demand for and Physician Delivery of Antirabies Prophylaxis. Plos Neglected Tropical Diseases in press
32. HufnagelL
BrockmannD
GeiselT
2004 Forecast and control of epidemics in a globalized world. Proc Natl Acad Sci U S A 101 15124 15129
33. RussellCA
SmithDL
WallerLA
ChildsJE
RealLA
2004 A priori prediction of disease invasion dynamics in a novel environment. Proc Biol Sci 271 21 25
34. HendersonJC
BiekR
HanlonCA
O'DeeS
RealLA
2008 Rabies virus in raccoons, Ohio, 2004. Emerg Infect Dis 14 650 652
35. TatemAJ
RogersDJ
HaySI
2006 Global transport networks and infectious disease spread. Adv Parasitol 62 293 343
36. KissiB
TordoN
BourhyH
1995 Genetic polymorphism in the rabies virus nucleoprotein gene. Virology 209 526 537
37. DelmasO
HolmesEC
TalbiC
LarrousF
DacheuxL
2008 Genomic diversity and evolution of the lyssaviruses. PLoS ONE 3 e2057
38. EdgarRC
2004 MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32 1792 1797
39. DrummondAJ
HoSY
PhillipsMJ
RambautA
2006 Relaxed phylogenetics and dating with confidence. PLoS Biol 4 e88
40. DrummondAJ
RambautA
ShapiroB
PybusOG
2005 Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol 22 1185 1192
41. SuchardMA
RambautA
2009 Many-core algorithms for statistical phylogenetics. Bioinformatics 25 1370 1376
42. O'BrienJD
MininVN
SuchardM
2009 Learning to count: robust estimates for labeled distances between molecular sequences. Molecular Biology and Evolution 26 801 814
43. SuchardM
KitchenC
SinsheimerJ
WeissR
2003 Hierarchical phylogenetic models for analyzing multipartite sequence data. Syst Biol 52 649 664
44. 2000 Road network data. VMAP0 (Vector Map Level 0) Highlands Ranch, Colorado LandInfo Worldwide Mapping
45. RedelingsBD
SuchardMA
2005 Joint Bayesian estimation of alignment and phylogeny. Syst Biol 54 401 418
46. NewtonM
RafteryA
1994 Approximate Bayesian inference with the weighted likelihood bootstrap. Journal of the Royal Statistical Society Series B 56 3 48
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Hygiena a epidemiológia Infekčné lekárstvo LaboratóriumČlánok vyšiel v časopise
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