Molecular Basis for the Selective Inhibition of Respiratory Syncytial Virus RNA Polymerase by 2'-Fluoro-4'-Chloromethyl-Cytidine Triphosphate
Viral RNA polymerase complexes mediate all of the enzymatic functions required for genomic replication and transcription in RNA viruses. Because of their essential role in the virus life cycle, RNA polymerases are major molecular targets for antiviral therapies. Sofosbuvir and mericitabine are related compounds belonging to a class of drugs called nucleoside analogs that inhibit the RNA polymerase of hepatitis C virus (HCV), a positive-strand RNA virus, but have no effect on negative-strand RNA viruses. The mechanistic reason for this inactivity is unknown. The only nucleoside analog currently under clinical evaluation against respiratory syncytial virus (RSV), a negative-strand RNA virus, is ALS-8176. In this study, we present the detailed mechanism of action of ALS-8112, the parent molecule of ALS-8176. A multidisciplinary approach combining cellular, chemical, structural, and enzymatic methods was employed to demonstrate that the triphosphate form of ALS-8112 targets the RNA polymerase of RSV, but not of HCV. A series of molecules structurally related to ALS-8112 displayed dual RSV/HCV inhibition, whereas mericitabine only targeted HCV RNA polymerase. Understanding the molecular basis of nucleotide selectivity towards distant viral RNA polymerases could not only be used to repurpose existing drugs against new viral infections, but also to design novel molecules with broad antiviral spectrum.
Vyšlo v časopise:
Molecular Basis for the Selective Inhibition of Respiratory Syncytial Virus RNA Polymerase by 2'-Fluoro-4'-Chloromethyl-Cytidine Triphosphate. PLoS Pathog 11(6): e32767. doi:10.1371/journal.ppat.1004995
Kategorie:
Research Article
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.ppat.1004995
Souhrn
Viral RNA polymerase complexes mediate all of the enzymatic functions required for genomic replication and transcription in RNA viruses. Because of their essential role in the virus life cycle, RNA polymerases are major molecular targets for antiviral therapies. Sofosbuvir and mericitabine are related compounds belonging to a class of drugs called nucleoside analogs that inhibit the RNA polymerase of hepatitis C virus (HCV), a positive-strand RNA virus, but have no effect on negative-strand RNA viruses. The mechanistic reason for this inactivity is unknown. The only nucleoside analog currently under clinical evaluation against respiratory syncytial virus (RSV), a negative-strand RNA virus, is ALS-8176. In this study, we present the detailed mechanism of action of ALS-8112, the parent molecule of ALS-8176. A multidisciplinary approach combining cellular, chemical, structural, and enzymatic methods was employed to demonstrate that the triphosphate form of ALS-8112 targets the RNA polymerase of RSV, but not of HCV. A series of molecules structurally related to ALS-8112 displayed dual RSV/HCV inhibition, whereas mericitabine only targeted HCV RNA polymerase. Understanding the molecular basis of nucleotide selectivity towards distant viral RNA polymerases could not only be used to repurpose existing drugs against new viral infections, but also to design novel molecules with broad antiviral spectrum.
Zdroje
1. Ebbert JO, Limper AH (2005) Respiratory syncytial virus pneumonitis in immunocompromised adults: clinical features and outcome. Respiration 72: 263–269. 15942295
2. Elliot AJ, Fleming DM (2008) Influenza and respiratory syncytial virus in the elderly. Expert Rev Vaccines 7: 249–258. doi: 10.1586/14760584.7.2.249 18324893
3. Nair H, Nokes DJ, Gessner BD, Dherani M, Madhi SA, et al. (2010) Global burden of acute lower respiratory infections due to respiratory syncytial virus in young children: a systematic review and meta-analysis. Lancet 375: 1545–1555. doi: 10.1016/S0140-6736(10)60206-1 20399493
4. Thompson WW, Shay DK, Weintraub E, Brammer L, Cox N, et al. (2003) Mortality associated with influenza and respiratory syncytial virus in the United States. JAMA 289: 179–186. 12517228
5. Wu P, Hartert TV (2011) Evidence for a causal relationship between respiratory syncytial virus infection and asthma. Expert Rev Anti Infect Ther 9: 731–745. doi: 10.1586/eri.11.92 21905783
6. Hall CB, Weinberg GA, Iwane MK, Blumkin AK, Edwards KM, et al. (2009) The burden of respiratory syncytial virus infection in young children. N Engl J Med 360: 588–598. doi: 10.1056/NEJMoa0804877 19196675
7. Singleton RJ, Bruden D, Bulkow LR (2007) Respiratory syncytial virus season and hospitalizations in the Alaskan Yukon-Kuskokwim Delta. Pediatr Infect Dis J 26: S46–50. doi: 10.1097/INF.0b013e318157da9b 18090200
8. Empey KM, Peebles RS Jr., Kolls JK (2010) Pharmacologic advances in the treatment and prevention of respiratory syncytial virus. Clin Infect Dis 50: 1258–1267. doi: 10.1086/651603 20235830
9. Bonfanti JF, Roymans D (2009) Prospects for the development of fusion inhibitors to treat human respiratory syncytial virus infection. Curr Opin Drug Discov Devel 12: 479–487. 19562644
10. DeVincenzo JP, Whitley RJ, Mackman RL, Scaglioni-Weinlich C, Harrison L, et al. (2014) Oral GS-5806 activity in a respiratory syncytial virus challenge study. N Engl J Med 371: 711–722. doi: 10.1056/NEJMoa1401184 25140957
11. Yan D, Lee S, Thakkar VD, Luo M, Moore ML, et al. (2014) Cross-resistance mechanism of respiratory syncytial virus against structurally diverse entry inhibitors. Proc Natl Acad Sci U S A 111: E3441–3449. doi: 10.1073/pnas.1405198111 25092342
12. De Clercq E, Neyts J (2009) Antiviral agents acting as DNA or RNA chain terminators. Handb Exp Pharmacol: 53–84.
13. Deval J, Symons JA, Beigelman L (2014) Inhibition of viral RNA polymerases by nucleoside and nucleotide analogs: therapeutic applications against positive-strand RNA viruses beyond hepatitis C virus. Curr Opin Virol 9C: 1–7.
14. Oestereich L, Ludtke A, Wurr S, Rieger T, Munoz-Fontela C, et al. (2014) Successful treatment of advanced Ebola virus infection with T-705 (favipiravir) in a small animal model. Antiviral Res 105: 17–21. doi: 10.1016/j.antiviral.2014.02.014 24583123
15. Smither SJ, Eastaugh LS, Steward JA, Nelson M, Lenk RP, et al. (2014) Post-exposure efficacy of oral T-705 (Favipiravir) against inhalational Ebola virus infection in a mouse model. Antiviral Res 104: 153–155. doi: 10.1016/j.antiviral.2014.01.012 24462697
16. Warren TK, Wells J, Panchal RG, Stuthman KS, Garza NL, et al. (2014) Protection against filovirus diseases by a novel broad-spectrum nucleoside analogue BCX4430. Nature 508: 402–405. doi: 10.1038/nature13027 24590073
17. Jin Z, Smith LK, Rajwanshi VK, Kim B, Deval J (2013) The ambiguous base-pairing and high substrate efficiency of T-705 (Favipiravir) Ribofuranosyl 5'-triphosphate towards influenza A virus polymerase. PLoS One 8: e68347. doi: 10.1371/journal.pone.0068347 23874596
18. Wang G, Deval J, Hong J, Dyatkina N, Prhavc M, et al. (2015) Discovery of 4'-chloromethyl-2'-deoxy-3',5'-di-O-isobutyryl-2'-fluorocytidine (ALS-8176), a first-in-class RSV polymerase inhibitor for treatment of human respiratory syncytial virus infection. J Med Chem 58: 1862–1878. doi: 10.1021/jm5017279 25667954
19. DeVincenzo JP, McClure MW, Symons JA, Fathi H MD, Westland C, et al. (2015) Activity of Oral ALS-008176 in a Respiratory Syncytial Virus Challenge Study. N Engl J Med Submitted.
20. Ren D, Daines DA (2011) Use of the EpiAirway model for characterizing long-term host-pathogen interactions. J Vis Exp: e3261.
21. Werner U, Kissel T (1996) In-vitro cell culture models of the nasal epithelium: a comparative histochemical investigation of their suitability for drug transport studies. Pharm Res 13: 978–988. 8842033
22. Grosfeld H, Hill MG, Collins PL (1995) RNA replication by respiratory syncytial virus (RSV) is directed by the N, P, and L proteins; transcription also occurs under these conditions but requires RSV superinfection for efficient synthesis of full-length mRNA. J Virol 69: 5677–5686. 7637014
23. Mason SW, Lawetz C, Gaudette Y, Do F, Scouten E, et al. (2004) Polyadenylation-dependent screening assay for respiratory syncytial virus RNA transcriptase activity and identification of an inhibitor. Nucleic Acids Res 32: 4758–4767. 15356293
24. Arnold JJ, Sharma SD, Feng JY, Ray AS, Smidansky ED, et al. (2012) Sensitivity of mitochondrial transcription and resistance of RNA polymerase II dependent nuclear transcription to antiviral ribonucleosides. PLoS Pathog 8: e1003030. doi: 10.1371/journal.ppat.1003030 23166498
25. Noton SL, Deflube LR, Tremaglio CZ, Fearns R (2012) The respiratory syncytial virus polymerase has multiple RNA synthesis activities at the promoter. PLoS Pathog 8: e1002980. doi: 10.1371/journal.ppat.1002980 23093940
26. Klumpp K, Leveque V, Le Pogam S, Ma H, Jiang WR, et al. (2006) The novel nucleoside analog R1479 (4'-azidocytidine) is a potent inhibitor of NS5B-dependent RNA synthesis and hepatitis C virus replication in cell culture. J Biol Chem 281: 3793–3799. 16316989
27. Fung A, Jin Z, Dyatkina N, Wang G, Beigelman L, et al. (2014) Efficiency of Incorporation and Chain Termination Determines the Inhibition Potency of 2'-Modified Nucleotide Analogs against Hepatitis C Virus Polymerase. Antimicrob Agents Chemother 58: 3636–3645. doi: 10.1128/AAC.02666-14 24733478
28. Appleby TC, Perry JK, Murakami E, Barauskas O, Feng J, et al. (2015) Viral replication. Structural basis for RNA replication by the hepatitis C virus polymerase. Science 347: 771–775. doi: 10.1126/science.1259210 25678663
29. Dochow M, Krumm SA, Crowe JE Jr., Moore ML, Plemper RK (2012) Independent structural domains in paramyxovirus polymerase protein. J Biol Chem 287: 6878–6891. doi: 10.1074/jbc.M111.325258 22215662
30. Poch O, Blumberg BM, Bougueleret L, Tordo N (1990) Sequence comparison of five polymerases (L proteins) of unsegmented negative-strand RNA viruses: theoretical assignment of functional domains. J Gen Virol 71 (Pt 5): 1153–1162.
31. Sidhu MS, Menonna JP, Cook SD, Dowling PC, Udem SA (1993) Canine distemper virus L gene: sequence and comparison with related viruses. Virology 193: 50–65. 8438585
32. Malur AG, Gupta NK, De Bishnu P, Banerjee AK (2002) Analysis of the mutations in the active site of the RNA-dependent RNA polymerase of human parainfluenza virus type 3 (HPIV3). Gene Expr 10: 93–100. 12064576
33. Sleat DE, Banerjee AK (1993) Transcriptional activity and mutational analysis of recombinant vesicular stomatitis virus RNA polymerase. J Virol 67: 1334–1339. 8382299
34. Deval J (2009) Antimicrobial strategies: inhibition of viral polymerases by 3'-hydroxyl nucleosides. Drugs 69: 151–166. doi: 10.2165/00003495-200969020-00002 19228073
35. Painter GR, Almond MR, Mao S, Liotta DC (2004) Biochemical and mechanistic basis for the activity of nucleoside analogue inhibitors of HIV reverse transcriptase. Curr Top Med Chem 4: 1035–1044. 15193137
36. Bruenn JA (2003) A structural and primary sequence comparison of the viral RNA-dependent RNA polymerases. Nucleic Acids Res 31: 1821–1829. 12654997
37. Gong P, Peersen OB (2010) Structural basis for active site closure by the poliovirus RNA-dependent RNA polymerase. Proc Natl Acad Sci U S A 107: 22505–22510. doi: 10.1073/pnas.1007626107 21148772
38. Gohara DW, Crotty S, Arnold JJ, Yoder JD, Andino R, et al. (2000) Poliovirus RNA-dependent RNA polymerase (3Dpol): structural, biochemical, and biological analysis of conserved structural motifs A and B. J Biol Chem 275: 25523–25532. 10827187
39. Subbiah M, Xiao S, Collins PL, Samal SK (2008) Complete sequence of the genome of avian paramyxovirus type 2 (strain Yucaipa) and comparison with other paramyxoviruses. Virus Res 137: 40–48. doi: 10.1016/j.virusres.2008.05.012 18603323
40. Hotard AL, Shaikh FY, Lee S, Yan D, Teng MN, et al. (2012) A stabilized respiratory syncytial virus reverse genetics system amenable to recombination-mediated mutagenesis. Virology 434: 129–136. doi: 10.1016/j.virol.2012.09.022 23062737
41. Malykhina O, Yednak MA, Collins PL, Olivo PD, Peeples ME (2011) A respiratory syncytial virus replicon that is noncytotoxic and capable of long-term foreign gene expression. J Virol 85: 4792–4801. doi: 10.1128/JVI.02399-10 21389127
42. Fearns R, Peeples ME, Collins PL (2002) Mapping the transcription and replication promoters of respiratory syncytial virus. J Virol 76: 1663–1672. 11799161
43. Noton SL, Cowton VM, Zack CR, McGivern DR, Fearns R (2010) Evidence that the polymerase of respiratory syncytial virus initiates RNA replication in a nontemplated fashion. Proc Natl Acad Sci U S A 107: 10226–10231. doi: 10.1073/pnas.0913065107 20479224
Štítky
Hygiena a epidemiológia Infekčné lekárstvo LaboratóriumČlánok vyšiel v časopise
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