Molecular and Functional Analyses of a Maize Autoactive NB-LRR Protein Identify Precise Structural Requirements for Activity
The plant hypersensitive defense response (HR) is a rapid, localized cell death, usually occurring upon the recognition of specific pathogen-encoded molecules and consequent activation of nucleotide binding-leucine rich repeat (NLR) proteins. Rp1-D21, a naturally-occurring mutant caused by the recombination of two NLR genes, confers a ‘lesion mimic’, HR-like phenotype in the absence of pathogen infection and provides a powerful tool to investigate the molecular mechanisms of NLR regulation. Here we report the results of a genetic screen in maize that identified novel mutations abrogating Rp1-D21-induced HR. To characterize the function of Rp1-D21, we transiently expressed Rp1-D21 and various derivatives in Nicotiana benthamiana to observe the resulting levels of HR. We furthermore examined the protein-protein interactions between and within different Rp1-D21 derivatives. We report novel insights into the precise structural requirements for NLR function and determine the function of a previously undefined motif. These insights enable a better understanding of how NLRs regulate the switch between the resting and the active states.
Vyšlo v časopise:
Molecular and Functional Analyses of a Maize Autoactive NB-LRR Protein Identify Precise Structural Requirements for Activity. PLoS Pathog 11(2): e32767. doi:10.1371/journal.ppat.1004674
Kategorie:
Research Article
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.ppat.1004674
Souhrn
The plant hypersensitive defense response (HR) is a rapid, localized cell death, usually occurring upon the recognition of specific pathogen-encoded molecules and consequent activation of nucleotide binding-leucine rich repeat (NLR) proteins. Rp1-D21, a naturally-occurring mutant caused by the recombination of two NLR genes, confers a ‘lesion mimic’, HR-like phenotype in the absence of pathogen infection and provides a powerful tool to investigate the molecular mechanisms of NLR regulation. Here we report the results of a genetic screen in maize that identified novel mutations abrogating Rp1-D21-induced HR. To characterize the function of Rp1-D21, we transiently expressed Rp1-D21 and various derivatives in Nicotiana benthamiana to observe the resulting levels of HR. We furthermore examined the protein-protein interactions between and within different Rp1-D21 derivatives. We report novel insights into the precise structural requirements for NLR function and determine the function of a previously undefined motif. These insights enable a better understanding of how NLRs regulate the switch between the resting and the active states.
Zdroje
1. Staskawicz BJ, Ausubel FM, Baker BJ, Ellis JG, Jones JD (1995) Molecular genetics of plant disease resistance. Science 268: 661–667. 7732374
2. Dangl JL, Jones JD (2001) Plant pathogens and integrated defence responses to infection. Nature 411: 826–833. 11459065
3. Ellis J, Dodds P, Pryor T (2000) Structure, function and evolution of plant disease resistance genes. Curr Opin Plant Biol 3: 278–284. 10873844
4. Pan Q, Wendel J, Fluhr R (2000) Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes. J Mol Evol 50: 203–213. 10754062
5. Bent AF, Mackey D (2007) Elicitors, Effectors, and R Genes: The New Paradigm and a Lifetime Supply of Questions. Annual Review of Phytopathology 45: 399–436. 17506648
6. Mur LA, Kenton P, Lloyd AJ, Ougham H, Prats E (2008) The hypersensitive response; the centenary is upon us but how much do we know? Journal of experimental Botany 59: 501–520. 18079135
7. Shen QH, Saijo Y, Mauch S, Biskup C, Bieri S, et al. (2007) Nuclear activity of MLA immune receptors links isolate-specific and basal disease-resistance responses. Science 315: 1098–1103. 17185563
8. Mackey D, Holt BF 3rd, Wiig A, Dangl JL (2002) RIN4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis. Cell 108: 743–754. 11955429
9. McHale L, Tan X, Koehl P, Michelmore RW (2006) Plant NBS-LRR proteins: adaptable guards. Genome Biol 7: 212. 16677430
10. Albrecht M, Takken FL (2006) Update on the domain architectures of NLRs and R proteins. Biochem Biophys Res Commun 339: 459–462. 16271351
11. Meyers BC, Dickerman AW, Michelmore RW, Sivaramakrishnan S, Sobral BW, et al. (1999) Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J 20: 317–332. 10571892
12. Maekawa T, Kufer TA, Schulze-Lefert P (2011) NLR functions in plant and animal immune systems: so far and yet so close. Nature immunology 12: 817–826. doi: 10.1038/ni.2083 21852785
13. Takken FL, Albrecht M, Tameling WI (2006) Resistance proteins: molecular switches of plant defence. Curr Opin Plant Biol 9: 383–390. 16713729
14. Tameling WI, Elzinga SD, Darmin PS, Vossen JH, Takken FL, et al. (2002) The tomato R gene products I-2 and MI-1 are functional ATP binding proteins with ATPase activity. Plant Cell 14: 2929–2939. 12417711
15. Williams SJ, Sornaraj P, deCourcy-Ireland E, Menz RI, Kobe B, et al. (2011) An autoactive mutant of the M flax rust resistance protein has a preference for binding ATP, whereas wild-type M protein binds ADP. Mol Plant Microbe Interact 24: 897–906. doi: 10.1094/MPMI-03-11-0052 21539434
16. Tornero P, Chao RA, Luthin WN, Goff SA, Dangl JL (2002) Large-scale structure-function analysis of the Arabidopsis RPM1 disease resistance protein. Plant Cell 14: 435–450. 11884685
17. van Ooijen G, Mayr G, Kasiem MM, Albrecht M, Cornelissen BJ, et al. (2008) Structure-function analysis of the NB-ARC domain of plant disease resistance proteins. J Exp Bot 59: 1383–1397. doi: 10.1093/jxb/ern045 18390848
18. Smith SM, Pryor AJ, Hulbert SH (2004) Allelic and Haplotypic Diversity at the Rp1 Rust Resistance Locus of Maize. Genetics 167: 1939–1947. 15342531
19. Hu G, Richter TE, Hulbert SH, Pryor T (1996) Disease Lesion Mimicry Caused by Mutations in the Rust Resistance Gene rp1. Plant Cell 8: 1367–1376. 12239417
20. Sun Q, Collins NC, Ayliffe M, Smith SM, Drake J, et al. (2001) Recombination between paralogues at the Rp1 rust resistance locus in maize. Genetics 158: 423–438. 11333250
21. Smith SM, Steinau M, Trick HN, Hulbert SH (2010) Recombinant Rp1 genes confer necrotic or nonspecific resistance phenotypes. Mol Genet Genomics 283: 591–602. doi: 10.1007/s00438-010-0536-5 20443026
22. Negeri A, Wang GF, Benavente L, Kibiti CM, Chaikam V, et al. (2013) Characterization of temperature and light effects on the defense response phenotypes associated with the maize Rp1-D21 autoactive resistance gene. BMC Plant Biol 13: 106. doi: 10.1186/1471-2229-13-106 23890100
23. Chintamanani S, Hulbert SH, Johal GS, Balint-Kurti PJ (2010) Identification of a maize locus that modulates the hypersensitive defense response, using mutant-assisted gene identification and characterization. Genetics 184: 813–825. doi: 10.1534/genetics.109.111880 20176981
24. Olukolu BA, Negeri A, Dhawan R, Venkata BP, Sharma P, et al. (2013) A connected set of genes associated with programmed cell death implicated in controlling the hypersensitive response in maize. Genetics 193: 609–620. doi: 10.1534/genetics.112.147595 23222653
25. Chaikam V, Negeri A, Dhawan R, Puchaka B, Ji J, et al. (2011) Use of Mutant-Assisted Gene Identification and Characterization (MAGIC) to identify novel genetic loci that modify the maize hypersensitive response. Theor Appl Genet 123: 985–997. doi: 10.1007/s00122-011-1641-5 21792633
26. Olukolu BA, Wang GF, Vontimitta V, Venkata BP, Marla S, et al. (2014) A genome-wide association study of the maize hypersensitive defense response identifies genes that cluster in related pathways. PLoS Genet 10: e1004562. doi: 10.1371/journal.pgen.1004562 25166276
27. Bai S, Liu J, Chang C, Zhang L, Maekawa T, et al. (2012) Structure-function analysis of barley NLR immune receptor MLA10 reveals its cell compartment specific activity in cell death and disease resistance. PLoS Pathog 8: e1002752. doi: 10.1371/journal.ppat.1002752 22685408
28. Collier SM, Hamel LP, Moffett P (2011) Cell death mediated by the N-terminal domains of a unique and highly conserved class of NB-LRR protein. Mol Plant Microbe Interact 24: 918–931. doi: 10.1094/MPMI-03-11-0050 21501087
29. Qi D, DeYoung BJ, Innes RW (2012) Structure-function analysis of the coiled-coil and leucine-rich repeat domains of the RPS5 disease resistance protein. Plant Physiol 158: 1819–1832. doi: 10.1104/pp.112.194035 22331412
30. Rairdan GJ, Collier SM, Sacco MA, Baldwin TT, Boettrich T, et al. (2008) The coiled-coil and nucleotide binding domains of the Potato Rx disease resistance protein function in pathogen recognition and signaling. Plant Cell 20: 739–751. doi: 10.1105/tpc.107.056036 18344282
31. Inoue H, Hayashi N, Matsushita A, Xinqiong L, Nakayama A, et al. (2013) Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction. Proc Natl Acad Sci U S A.
32. Hoser R, Zurczak M, Lichocka M, Zuzga S, Dadlez M, et al. (2013) Nucleocytoplasmic partitioning of tobacco N receptor is modulated by SGT1. New Phytol 200: 158–171. doi: 10.1111/nph.12347 23731343
33. Slootweg E, Roosien J, Spiridon LN, Petrescu AJ, Tameling W, et al. (2010) Nucleocytoplasmic distribution is required for activation of resistance by the potato NB-LRR receptor Rx1 and is balanced by its functional domains. Plant Cell 22: 4195–4215. doi: 10.1105/tpc.110.077537 21177483
34. van Ooijen G, Mayr G, Albrecht M, Cornelissen BJ, Takken FL (2008) Transcomplementation, but not physical association of the CC-NB-ARC and LRR domains of tomato R protein Mi-1.2 is altered by mutations in the ARC2 subdomain. Mol Plant 1: 401–410. doi: 10.1093/mp/ssn009 19825549
35. Collins N, Drake J, Ayliffe M, Sun Q, Ellis J, et al. (1999) Molecular characterization of the maize Rp1-D rust resistance haplotype and its mutants. Plant Cell 11: 1365–1376. 10402435
36. Slootweg EJ, Spiridon LN, Roosien J, Butterbach P, Pomp R, et al. (2013) Structural determinants at the interface of the ARC2 and leucine-rich repeat domains control the activation of the plant immune receptors Rx1 and Gpa2. Plant Physiol 162: 1510–1528. doi: 10.1104/pp.113.218842 23660837
37. Howles P, Lawrence G, Finnegan J, McFadden H, Ayliffe M, et al. (2005) Autoactive alleles of the flax L6 rust resistance gene induce non-race-specific rust resistance associated with the hypersensitive response. Mol Plant Microbe Interact 18: 570–582. 15986927
38. Ade J, DeYoung BJ, Golstein C, Innes RW (2007) Indirect activation of a plant nucleotide binding site-leucine-rich repeat protein by a bacterial protease. Proc Natl Acad Sci U S A 104: 2531–2536. 17277084
39. Dodds PN, Lawrence GJ, Catanzariti AM, Teh T, Wang CI, et al. (2006) Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes. Proc Natl Acad Sci U S A 103: 8888–8893. 16731621
40. Riedl SJ, Li W, Chao Y, Schwarzenbacher R, Shi Y (2005) Structure of the apoptotic protease-activating factor 1 bound to ADP. Nature 434: 926–933. 15829969
41. Maekawa T, Cheng W, Spiridon LN, Toller A, Lukasik E, et al. (2011) Coiled-coil domain-dependent homodimerization of intracellular barley immune receptors defines a minimal functional module for triggering cell death. Cell Host Microbe 9: 187–199. doi: 10.1016/j.chom.2011.02.008 21402358
42. Mestre P, Baulcombe DC (2006) Elicitor-mediated oligomerization of the tobacco N disease resistance protein. Plant Cell 18: 491–501. 16387833
43. Bernoux M, Ve T, Williams S, Warren C, Hatters D, et al. (2011) Structural and functional analysis of a plant resistance protein TIR domain reveals interfaces for self-association, signaling, and autoregulation. Cell Host Microbe 9: 200–211. doi: 10.1016/j.chom.2011.02.009 21402359
44. Rairdan GJ, Moffett P (2006) Distinct domains in the ARC region of the potato resistance protein Rx mediate LRR binding and inhibition of activation. Plant Cell 18: 2082–2093. 16844906
45. Stirnweis D, Milani SD, Jordan T, Keller B, Brunner S (2014) Substitutions of Two Amino Acids in the Nucleotide-Binding Site Domain of a Resistance Protein Enhance the Hypersensitive Response and Enlarge the PM3F Resistance Spectrum in Wheat. Mol Plant Microbe Interact 27: 265–276. doi: 10.1094/MPMI-10-13-0297-FI 24329172
46. Tameling WI, Baulcombe DC (2007) Physical association of the NB-LRR resistance protein Rx with a Ran GTPase-activating protein is required for extreme resistance to Potato virus X. Plant Cell 19: 1682–1694. 17526750
47. Sacco MA, Mansoor S, Moffett P (2007) A RanGAP protein physically interacts with the NB-LRR protein Rx, and is required for Rx-mediated viral resistance. Plant J 52: 82–93. 17655649
48. Moffett P (2009) Mechanisms of recognition in dominant R gene mediated resistance. Adv Virus Res 75: 1–33. doi: 10.1016/S0065-3527(09)07501-0 20109662
49. Collier SM, Moffett P (2009) NB-LRRs work a "bait and switch" on pathogens. Trends Plant Sci 14: 521–529. doi: 10.1016/j.tplants.2009.08.001 19720556
50. Farnham G, Baulcombe DC (2006) Artificial evolution extends the spectrum of viruses that are targeted by a disease-resistance gene from potato. Proc Natl Acad Sci U S A 103: 18828–18833. 17021014
51. Hwang CF, Williamson VM (2003) Leucine-rich repeat-mediated intramolecular interactions in nematode recognition and cell death signaling by the tomato resistance protein Mi. Plant J 34: 585–593. 12787241
52. Ellis JG, Lawrence GJ, Luck JE, Dodds PN (1999) Identification of regions in alleles of the flax rust resistance gene L that determine differences in gene-for-gene specificity. Plant Cell 11: 495–506. 10072407
53. Axtell MJ, McNellis TW, Mudgett MB, Hsu CS, Staskawicz BJ (2001) Mutational analysis of the Arabidopsis RPS2 disease resistance gene and the corresponding pseudomonas syringae avrRpt2 avirulence gene. Mol Plant Microbe Interact 14: 181–188. 11204781
54. Jia Y, McAdams SA, Bryan GT, Hershey HP, Valent B (2000) Direct interaction of resistance gene and avirulence gene products confers rice blast resistance. EMBO J 19: 4004–4014. 10921881
55. Bendahmane A, Farnham G, Moffett P, Baulcombe DC (2002) Constitutive gain-of-function mutants in a nucleotide binding site-leucine rich repeat protein encoded at the Rx locus of potato. Plant J 32: 195–204. 12383085
56. Gao Z, Chung EH, Eitas TK, Dangl JL (2011) Plant intracellular innate immune receptor Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1) is activated at, and functions on, the plasma membrane. Proc Natl Acad Sci U S A 108: 7619–7624. doi: 10.1073/pnas.1104410108 21490299
57. Cesari S, Kanzaki H, Fujiwara T, Bernoux M, Chalvon V, et al. (2014) The NB-LRR proteins RGA4 and RGA5 interact functionally and physically to confer disease resistance. EMBO J 33: 18.
58. Hwang CF, Bhakta AV, Truesdell GM, Pudlo WM, Williamson VM (2000) Evidence for a role of the N terminus and leucine-rich repeat region of the Mi gene product in regulation of localized cell death. Plant Cell 12: 1319–1329. 10948252
59. Takken FL, Tameling WI (2009) To nibble at plant resistance proteins. Science 324: 744–746. doi: 10.1126/science.1171666 19423813
60. Hao W, Collier SM, Moffett P, Chai J (2013) Structural basis for the interaction between the potato virus X resistance protein (Rx) and its cofactor Ran GTPase-activating protein 2 (RanGAP2). J Biol Chem 288: 35868–35876. doi: 10.1074/jbc.M113.517417 24194517
61. Krasileva KV, Dahlbeck D, Staskawicz BJ (2010) Activation of an Arabidopsis resistance protein is specified by the in planta association of its leucine-rich repeat domain with the cognate oomycete effector. Plant Cell 22: 2444–2458. doi: 10.1105/tpc.110.075358 20601497
62. Moffett P, Farnham G, Peart J, Baulcombe DC (2002) Interaction between domains of a plant NBS-LRR protein in disease resistance-related cell death. EMBO J 21: 4511–4519. 12198153
63. Williams SJ, Sohn KH, Wan L, Bernoux M, Sarris PF, et al. (2014) Structural basis for assembly and function of a heterodimeric plant immune receptor. Science 344: 299–303. doi: 10.1126/science.1247357 24744375
64. Narusaka M, Kubo Y, Hatakeyama K, Imamura J, Ezura H, et al. (2013) Interfamily transfer of dual NB-LRR genes confers resistance to multiple pathogens. PLoS One 8: e55954. doi: 10.1371/journal.pone.0055954 23437080
65. Maekawa T, Kracher B, Vernaldi S, Ver Loren van Themaat E, Schulze-Lefert P (2012) Conservation of NLR-triggered immunity across plant lineages. Proc Natl Acad Sci U S A 109: 20119–20123. doi: 10.1073/pnas.1218059109 23175786
66. Harris CJ, Slootweg EJ, Goverse A, Baulcombe DC (2013) Stepwise artificial evolution of a plant disease resistance gene. Proc Natl Acad Sci U S A 110: 21189–21194. doi: 10.1073/pnas.1311134110 24324167
67. Martin K, Kopperud K, Chakrabarty R, Banerjee R, Brooks R, et al. (2009) Transient expression in Nicotiana benthamiana fluorescent marker lines provides enhanced definition of protein localization, movement and interactions in planta. Plant J 59: 150–162. doi: 10.1111/j.1365-313X.2009.03850.x 19309457
68. Nakagawa T, Kurose T, Hino T, Tanaka K, Kawamukai M, et al. (2007) Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation. J Biosci Bioeng 104: 34–41. 17697981
69. Kelley LA, Sternberg MJ (2009) Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc 4: 363–371. doi: 10.1038/nprot.2009.2 19247286
70. Voinnet O, Rivas S, Mestre P, Baulcombe D (2003) An enhanced transient expression system in plants based on suppression of gene silencing by the p19 protein of tomato bushy stunt virus. Plant J 33: 949–956. 12609035
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