#PAGE_PARAMS# #ADS_HEAD_SCRIPTS# #MICRODATA#

Hox Transcription Factors Access the RNA Polymerase II Machinery through Direct Homeodomain Binding to a Conserved Motif of Mediator Subunit Med19


Mutations of Hox developmental genes in the fruit fly Drosophila melanogaster may provoke spectacular changes in form: transformations of one body part into another, or loss of organs. This attribute identifies them as important developmental genes. Insect and vertebrate Hox proteins contain highly related homeodomain motifs used to bind to regulatory DNA and influence expression of developmental target genes. This occurs at the level of transcription of target gene DNA to messenger RNA by RNA polymerase II and its associated protein machinery (>50 proteins). How Hox homeodomain proteins induce fine-tuned transcription remains an open question. We provide an initial response, finding that Hox proteins also use their homeodomains to bind one machinery protein, Mediator complex subunit 19 (Med19) through a Med19 sequence that is highly conserved in animal phyla. Med19 mutants isolated in this work (the first animal mutants) show that Med19 assists Hox protein functions. Further, they indicate that homeodomain binding to the Med19 motif is required for normal expression of a Hox target gene. Our work provides new clues for understanding how the specific transcriptional inputs of the highly conserved Hox class of transcription factors are integrated at the level of the whole transcription machinery.


Vyšlo v časopise: Hox Transcription Factors Access the RNA Polymerase II Machinery through Direct Homeodomain Binding to a Conserved Motif of Mediator Subunit Med19. PLoS Genet 10(5): e32767. doi:10.1371/journal.pgen.1004303
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1004303

Souhrn

Mutations of Hox developmental genes in the fruit fly Drosophila melanogaster may provoke spectacular changes in form: transformations of one body part into another, or loss of organs. This attribute identifies them as important developmental genes. Insect and vertebrate Hox proteins contain highly related homeodomain motifs used to bind to regulatory DNA and influence expression of developmental target genes. This occurs at the level of transcription of target gene DNA to messenger RNA by RNA polymerase II and its associated protein machinery (>50 proteins). How Hox homeodomain proteins induce fine-tuned transcription remains an open question. We provide an initial response, finding that Hox proteins also use their homeodomains to bind one machinery protein, Mediator complex subunit 19 (Med19) through a Med19 sequence that is highly conserved in animal phyla. Med19 mutants isolated in this work (the first animal mutants) show that Med19 assists Hox protein functions. Further, they indicate that homeodomain binding to the Med19 motif is required for normal expression of a Hox target gene. Our work provides new clues for understanding how the specific transcriptional inputs of the highly conserved Hox class of transcription factors are integrated at the level of the whole transcription machinery.


Zdroje

1. LewisEB (1978) A gene complex controlling segmentation in Drosophila. Nature 276: 565–570.

2. KaufmanTC, LewisR, WakimotoB (1980) Cytogenetic Analysis of Chromosome 3 in DROSOPHILA MELANOGASTER: The Homoeotic Gene Complex in Polytene Chromosome Interval 84a-B. Genetics 94: 115–133.

3. ChooSW, WhiteR, RussellS (2011) Genome-wide analysis of the binding of the Hox protein Ultrabithorax and the Hox cofactor Homothorax in Drosophila. PLoS One 6: e14778.

4. SlatteryM, MaL, NégreN, WhiteKP, MannRS (2011) Genome-wide tissue-specific occupancy of the Hox protein Ultrabithorax and Hox cofactor Homothorax in Drosophila. PLoS One 6: e14686.

5. PavlopoulosA, AkamM (2011) Hox gene Ultrabithorax regulates distinct sets of target genes at successive stages of Drosophila haltere morphogenesis. Proc Natl Acad Sci U S A 108: 2855–2860.

6. HueberSD, LohmannI (2008) Shaping segments: Hox gene function in the genomic age. Bioessays 30: 965–979.

7. HueberSD, BezdanD, HenzSR, BlankM, WuH, et al. (2007) Comparative analysis of Hox downstream genes in Drosophila. Development 134: 381–392.

8. GehringWJ, KloterU, SugaH (2009) Evolution of the Hox gene complex from an evolutionary ground state. Curr Top Dev Biol 88: 35–61.

9. GehringWJ, HiromiY (1986) Homeotic genes and the homeobox. Annu Rev Genet 20: 147–173.

10. McGinnisW, KrumlaufR (1992) Homeobox genes and axial patterning. Cell 68: 283–302.

11. ScottMP, CarrollSB (1987) The segmentation and homeotic gene network in early Drosophila development. Cell 51: 689–698.

12. ScottMP, WeinerAJ (1984) Structural relationships among genes that control development: sequence homology between the Antennapedia, Ultrabithorax, and fushi tarazu loci of Drosophila. Proc Natl Acad Sci U S A 81: 4115–4119.

13. GehringWJ, AffolterM, BürglinT (1994) Homeodomain proteins. Annu Rev Biochem 63: 487–526.

14. McGinnisW, LevineMS, HafenE, KuroiwaA, GehringWJ (1984) A conserved DNA sequence in homoeotic genes of the Drosophila Antennapedia and bithorax complexes. Nature 308: 428–433.

15. ChauvetS, MerabetS, BilderD, ScottMP, PradelJ, et al. (2000) Distinct hox protein sequences determine specificity in different tissues. Proc Natl Acad Sci U S A 97: 4064–4069.

16. MerabetS, SambraniN, PradelJ, GrabaY (2010) Regulation of Hox activity: insights from protein motifs. Adv Exp Med Biol 689: 3–16.

17. GebeleinB, McKayDJ, MannRS (2004) Direct integration of Hox and segmentation gene inputs during Drosophila development. Nature 431: 653–659.

18. JoshiR, SunL, MannR (2010) Dissecting the functional specificities of two Hox proteins. Genes Dev 24: 1533–1545.

19. JoshiR, PassnerJM, RohsR, JainR, SosinskyA, et al. (2007) Functional specificity of a Hox protein mediated by the recognition of minor groove structure. Cell 131: 530–543.

20. PrinceF, KatsuyamaT, OshimaY, PlazaS, Resendez-PerezD, et al. (2008) The YPWM motif links Antennapedia to the basal transcriptional machinery. Development 135: 1669–1679.

21. BourbonHM (2008) Comparative genomics supports a deep evolutionary origin for the large, four-module transcriptional mediator complex. Nucleic Acids Res 36: 3993–4008.

22. BoubeM, JouliaL, CribbsDL, BourbonHM (2002) Evidence for a mediator of RNA polymerase II transcriptional regulation conserved from yeast to man. Cell 110: 143–151.

23. BourbonHM, AguileraA, AnsariAZ, AsturiasFJ, BerkAJ, et al. (2004) A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II. Mol Cell 14: 553–557.

24. BorggrefeT, YueX (2011) Interactions between subunits of the Mediator complex with gene-specific transcription factors. Semin Cell Dev Biol 22: 759–768 Epub 2011 Aug 2014.

25. KornbergRD (2005) Mediator and the mechanism of transcriptional activation. Trends Biochem Sci 30: 235–239.

26. CaiG, ImasakiT, TakagiY, AsturiasFJ (2009) Mediator structural conservation and implications for the regulation mechanism. Structure 17: 559–567.

27. BaumliS, HoeppnerS, CramerP (2005) A conserved mediator hinge revealed in the structure of the MED7.MED21 (Med7.Srb7) heterodimer. J Biol Chem 280: 18171–18178 Epub 12005 Feb 18114.

28. MalikS, RoederRG (2010) The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation. Nat Rev Genet 11: 761–772 Epub 2010 Oct 2013.

29. BoubeM, FaucherC, JouliaL, CribbsDL, BourbonHM (2000) Drosophila homologs of transcriptional mediator complex subunits are required for adult cell and segment identity specification. Genes Dev 14: 2906–2917.

30. HuCD, ChinenovY, KerppolaTK (2002) Visualization of interactions among bZIP and Rel family proteins in living cells using bimolecular fluorescence complementation. Mol Cell 9: 789–798.

31. PlazaS, PrinceF, AdachiY, PunzoC, CribbsDL, et al. (2008) Cross-regulatory protein-protein interactions between Hox and Pax transcription factors. Proc Natl Acad Sci U S A 105: 13439–13444.

32. HudryB, VialaS, GrabaY, MerabetS (2011) Visualization of protein interactions in living Drosophila embryos by the bimolecular fluorescence complementation assay. BMC Biol 9: 5.

33. BrandAH, PerrimonN (1993) Targeted gene expression as a means of altering cell fates and generating dominant phenotypes. Development 118: 401–415.

34. GraveleyBR, BrooksAN, CarlsonJW, DuffMO, LandolinJM, et al. (2011) The developmental transcriptome of Drosophila melanogaster. Nature 471: 473–479.

35. GolicKG (1991) Site-specific recombination between homologous chromosomes in Drosophila. Science 252: 958–961.

36. MorataG, RipollP (1975) Minutes: mutants of drosophila autonomously affecting cell division rate. Dev Biol 42: 211–221.

37. ColeES, PalkaJ (1982) The pattern of campaniform sensilla on the wing and haltere of Drosophila melanogaster and several of its homeotic mutants. J Embryol Exp Morphol 71: 41–61.

38. AbbottMK, KaufmanTC (1986) The relationship between the functional complexity and the molecular organization of the Antennapedia locus of Drosophila melanogaster. Genetics 114: 919–942.

39. MerrillVK, TurnerFR, KaufmanTC (1987) A genetic and developmental analysis of mutations in the Deformed locus in Drosophila melanogaster. Dev Biol 122: 379–395.

40. LebretonG, FaucherC, CribbsDL, BenassayagC (2008) Timing of Wingless signalling distinguishes maxillary and antennal identities in Drosophila melanogaster. Development 135: 2301–2309.

41. WeatherbeeSD, HalderG, KimJ, HudsonA, CarrollS (1998) Ultrabithorax regulates genes at several levels of the wing-patterning hierarchy to shape the development of the Drosophila haltere. Genes Dev 12: 1474–1482.

42. HershBM, NelsonCE, StollSJ, NortonJE, AlbertTJ, et al. (2007) The UBX-regulated network in the haltere imaginal disc of D. melanogaster. Dev Biol 302: 717–727.

43. MortinMA, ZuernerR, BergerS, HamiltonBJ (1992) Mutations in the second-largest subunit of Drosophila RNA polymerase II interact with Ubx. Genetics 131: 895–903.

44. MerabetS, HudryB, SaadaouiM, GrabaY (2009) Classification of sequence signatures: a guide to Hox protein function. Bioessays 31: 500–511.

45. TsaiCJ, NussinovR (2011) Gene-specific transcription activation via long-range allosteric shape-shifting. Biochem J 439: 15–25.

46. BaidoobonsoSM, GuidiBW, MyersLC (2007) Med19(Rox3) regulates Intermodule interactions in the Saccharomyces cerevisiae mediator complex. J Biol Chem 282: 5551–5559 Epub 2006 Dec 5527.

47. TsaiKL, SatoS, Tomomori-SatoC, ConawayRC, ConawayJW, et al. (2013) A conserved Mediator-CDK8 kinase module association regulates Mediator-RNA polymerase II interaction. Nat Struct Mol Biol 20: 611–619.

48. DingN, Tomomori-SatoC, SatoS, ConawayRC, ConawayJW, et al. (2009) MED19 and MED26 Are Synergistic Functional Targets of the RE1 Silencing Transcription Factor in Epigenetic Silencing of Neuronal Gene Expression. J Biol Chem 284: 2648–2656 Epub 2008 Dec 2642.

49. ChenL, LiangZ, TianQ, LiC, MaX, et al. (2011) Overexpression of LCMR1 is significantly associated with clinical stage in human NSCLC. J Exp Clin Cancer Res 30: 18.

50. DingXF, HuangGM, ShiY, LiJA, FangXD (2012) Med19 promotes gastric cancer progression and cellular growth. Gene 504: 262–267.

51. LiLH, HeJ, HuaD, GuoZJ, GaoQ (2011) Lentivirus-mediated inhibition of Med19 suppresses growth of breast cancer cells in vitro. Cancer Chemother Pharmacol 68: 207–215.

52. WangT, HaoL, FengY, WangG, QinD, et al. (2011) Knockdown of MED19 by lentivirus-mediated shRNA in human osteosarcoma cells inhibits cell proliferation by inducing cell cycle arrest in the G0/G1 phase. Oncol Res 19: 193–201.

53. LiXH, FangDN, ZengCM (2011) Knockdown of MED19 by short hairpin RNA-mediated gene silencing inhibits pancreatic cancer cell proliferation. Cancer Biother Radiopharm 26: 495–501.

54. CuiX, XuD, LvC, QuF, HeJ, et al. (2011) Suppression of MED19 expression by shRNA induces inhibition of cell proliferation and tumorigenesis in human prostate cancer cells. BMB Rep 44: 547–552.

55. SunM, JiangR, LiJD, LuoSL, GaoHW, et al. (2011) MED19 promotes proliferation and tumorigenesis of lung cancer. Mol Cell Biochem 355: 27–33.

56. Ji-FuE, XingJJ, HaoLQ, FuCG (2012) Suppression of lung cancer metastasis-related protein 1 (LCMR1) inhibits the growth of colorectal cancer cells. Mol Biol Rep 39: 3675–3681.

57. ZouSW, AiKX, WangZG, YuanZ, YanJ, et al. (2011) The role of Med19 in the proliferation and tumorigenesis of human hepatocellular carcinoma cells. Acta Pharmacol Sin 32: 354–360.

58. ZhangH, JiangH, WangW, GongJ, ZhangL, et al. (2012) Expression of Med19 in bladder cancer tissues and its role on bladder cancer cell growth. Urol Oncol 30: 920–927.

59. Imberg-KazdanK, HaS, GreenfieldA, PoultneyCS, BonneauR, et al. (2013) A genome-wide RNA interference screen identifies new regulators of androgen receptor function in prostate cancer cells. Genome Res 23: 581–591.

60. DingN, ZhouH, EstevePO, ChinHG, KimS, et al. (2008) Mediator links epigenetic silencing of neuronal gene expression with x-linked mental retardation. Mol Cell 31: 347–359.

61. GalantR, CarrollSB (2002) Evolution of a transcriptional repression domain in an insect Hox protein. Nature 415: 910–913.

62. HittingerCT, CarrollSB (2008) Evolution of an insect-specific GROUCHO-interaction motif in the ENGRAILED selector protein. Evol Dev 10: 537–545.

63. WongKH, StruhlK (2011) The Cyc8-Tup1 complex inhibits transcription primarily by masking the activation domain of the recruiting protein. Genes Dev 25: 2525–2539.

64. PapadopoulosDK, VukojevicV, AdachiY, TereniusL, RiglerR, et al. (2010) Function and specificity of synthetic Hox transcription factors in vivo. Proc Natl Acad Sci U S A 107: 4087–4092.

65. PapadopoulosDK, Reséndez-PérezD, Cárdenas-ChávezDL, Villanueva-SeguraK, Canales-del-CastilloR, et al. (2011) Functional synthetic Antennapedia genes and the dual roles of YPWM motif and linker size in transcriptional activation and repression. Proc Natl Acad Sci U S A 108: 11959–11964.

66. LelliKM, NoroB, MannRS (2011) Variable motif utilization in homeotic selector (Hox)-cofactor complex formation controls specificity. Proc Natl Acad Sci U S A 108: 21122–21127.

67. AkamM (1998) Hox genes: from master genes to micromanagers. Curr Biol 8: R676–678.

68. BenassayagC, PlazaS, CallaertsP, ClementsJ, RomeoY, et al. (2003) Evidence for a direct functional antagonism of the selector genes proboscipedia and eyeless in Drosophila head development. Development 130: 575–586.

Štítky
Genetika Reprodukčná medicína

Článok vyšiel v časopise

PLOS Genetics


2014 Číslo 5
Najčítanejšie tento týždeň
Najčítanejšie v tomto čísle
Kurzy

Zvýšte si kvalifikáciu online z pohodlia domova

Aktuální možnosti diagnostiky a léčby litiáz
nový kurz
Autori: MUDr. Tomáš Ürge, PhD.

Všetky kurzy
Prihlásenie
Zabudnuté heslo

Zadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.

Prihlásenie

Nemáte účet?  Registrujte sa

#ADS_BOTTOM_SCRIPTS#