The Impairment of MAGMAS Function in Human Is Responsible for a Severe Skeletal Dysplasia
Skeletal dysplasias (SD) refer to a complex group of rare genetic disorders affecting the growth and development of the skeleton. The identification of the molecular basis of a considerable number of SD has greatly expanded our knowledge of the ossification process. Among SD, spondylodysplastic dysplasia is a generic term describing different conditions characterized by severe vertebral abnormalities and distinct by additional specific features. Several entities within this group are well defined. However, a few cases remain unclassified, of which a novel autosomal recessive spondylometaphyseal dysplasia recently reported by Mégarbané et al. in two Lebanese families. Here, we identified MAGMAS as a candidate gene responsible for this severe SD. MAGMAS, also referred to as PAM16, is a mitochondria-associated protein, involved in pre-proteins import into mitochondria and essential for cell growth and development. We demonstrated that MAGMAS is expressed in bone and cartilage in early developmental stages underlining its specific role in skeletogenesis. We also give strong evidence of the deleterious effect of the identified mutation on the in-vivo activity of Magmas and the viability of yeast strains. Reporting deleterious MAGMAS mutation in a SD supports a key and specific role for this mitochondrial protein in ossification.
Vyšlo v časopise:
The Impairment of MAGMAS Function in Human Is Responsible for a Severe Skeletal Dysplasia. PLoS Genet 10(5): e32767. doi:10.1371/journal.pgen.1004311
Kategorie:
Research Article
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.pgen.1004311
Souhrn
Skeletal dysplasias (SD) refer to a complex group of rare genetic disorders affecting the growth and development of the skeleton. The identification of the molecular basis of a considerable number of SD has greatly expanded our knowledge of the ossification process. Among SD, spondylodysplastic dysplasia is a generic term describing different conditions characterized by severe vertebral abnormalities and distinct by additional specific features. Several entities within this group are well defined. However, a few cases remain unclassified, of which a novel autosomal recessive spondylometaphyseal dysplasia recently reported by Mégarbané et al. in two Lebanese families. Here, we identified MAGMAS as a candidate gene responsible for this severe SD. MAGMAS, also referred to as PAM16, is a mitochondria-associated protein, involved in pre-proteins import into mitochondria and essential for cell growth and development. We demonstrated that MAGMAS is expressed in bone and cartilage in early developmental stages underlining its specific role in skeletogenesis. We also give strong evidence of the deleterious effect of the identified mutation on the in-vivo activity of Magmas and the viability of yeast strains. Reporting deleterious MAGMAS mutation in a SD supports a key and specific role for this mitochondrial protein in ossification.
Zdroje
1. KarsentyG, KronenbergHM, SettembreC (2009) Genetic control of bone formation. Annu Rev Cell Dev Biol 25: 629–648 doi:10.1146/annurev.cellbio.042308.113308
2. BaitnerAC, MaurerSG, GruenMB, Di CesarePE (2000) The genetic basis of the osteochondrodysplasias. J Pediatr Orthop 20: 594–605.
3. WarmanML, Cormier-DaireV, HallC, KrakowD, LachmanR, et al. (2011) Nosology and classification of genetic skeletal disorders: 2010 revision. Am J Med Genet A 155A: 943–968 doi:10.1002/ajmg.a.33909
4. IkegawaS (2006) Genetic analysis of skeletal dysplasia: recent advances and perspectives in the post-genome-sequence era. J Hum Genet 51: 581–586 doi:10.1007/s10038-006-0401-x
5. HuberC, FaqeihEA, BartholdiD, Bole-FeysotC, BorochowitzZ, et al. (2013) Exome sequencing identifies INPPL1 mutations as a cause of opsismodysplasia. Am J Hum Genet 92: 144–149 doi:10.1016/j.ajhg.2012.11.015
6. MégarbanéA, DagherR, MelkiI (2008) Sib pair with previously unreported skeletal dysplasia. Am J Med Genet A 146A: 2916–2919 doi:10.1002/ajmg.a.32540
7. MégarbanéA, MehawejC, El ZahrA, HaddadS, Cormier-DaireV (2013) A Second Family with Autosomal Recessive Spondylometaphyseal Dysplasia and Early Death. Am J Med Genet A 164: 1010–4 doi:10.1002/ajmg.a.36372
8. LanderES, BotsteinD (1987) Homozygosity mapping: a way to map human recessive traits with the DNA of inbred children. Science 236: 1567–1570.
9. KumarP, HenikoffS, NgPC (2009) Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc 4: 1073–1081 doi:10.1038/nprot.2009.86
10. ChoiY, SimsGE, MurphyS, MillerJR, ChanAP (2012) Predicting the functional effect of amino acid substitutions and indels. PloS One 7: e46688 doi:10.1371/journal.pone.0046688
11. PurcellS, NealeB, Todd-BrownK, ThomasL, FerreiraMAR, et al. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81: 559–575 doi:10.1086/519795
12. FrazierAE, DudekJ, GuiardB, VoosW, LiY, et al. (2004) Pam16 has an essential role in the mitochondrial protein import motor. Nat Struct Mol Biol 11: 226–233 doi:10.1038/nsmb735
13. JubinskyPT, MesserA, BenderJ, MorrisRE, CiraoloGM, et al. (2001) Identification and characterization of Magmas, a novel mitochondria-associated protein involved in granulocyte-macrophage colony-stimulating factor signal transduction. Exp Hematol 29: 1392–1402.
14. PengJ, HuangC-H, ShortMK, JubinskyPT (2005) Magmas gene structure and evolution. In Silico Biol 5: 251–263.
15. WinzelerEA, ShoemakerDD, AstromoffA, LiangH, AndersonK, et al. (1999) Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285: 901–906.
16. BeckerS, GehrsitzA, BorkP, BuchnerS, BuchnerE (2001) The black-pearl gene of Drosophila defines a novel conserved protein family and is required for larval growth and survival. Gene 262: 15–22 doi:10.1016/S0378-1119(00)00548-5
17. SinhaD, JoshiN, ChittoorB, SamjiP, D'SilvaP (2010) Role of Magmas in protein transport and human mitochondria biogenesis. Hum Mol Genet 19: 1248–1262 doi:10.1093/hmg/ddq002
18. SchatzG, DobbersteinB (1996) Common principles of protein translocation across membranes. Science 271: 1519–1526.
19. WagnerK, MickDU, RehlingP (2009) Protein transport machineries for precursor translocation across the inner mitochondrial membrane. Biochim Biophys Acta 1793: 52–59 doi:10.1016/j.bbamcr.2008.05.026
20. RoyS, ShortMK, StanleyER, JubinskyPT (2012) Essential role of Drosophila black-pearl is mediated by its effects on mitochondrial respiration. FASEB J Off Publ Fed Am Soc Exp Biol 26: 3822–3833 doi:10.1096/fj.11-193540
21. ShortMK, HallettJP, TarK, DangeT, SchmidtM, et al. (2012) The yeast magmas ortholog pam16 has an essential function in fermentative growth that involves sphingolipid metabolism. PloS One 7: e39428 doi:10.1371/journal.pone.0039428
22. JubinskyPT, ShortMK, MutemaG, WitteDP (2003) Developmental expression of Magmas in murine tissues and its co-expression with the GM-CSF receptor. J Histochem Cytochem Off J Histochem Soc 51: 585–596.
23. D'SilvaPR, SchilkeB, WalterW, CraigEA (2005) Role of Pam16's degenerate J domain in protein import across the mitochondrial inner membrane. Proc Natl Acad Sci U S A 102: 12419–12424 doi:10.1073/pnas.0505969102
24. ElsnerS, SimianD, IosefsonO, MaromM, AzemA (2009) The mitochondrial protein translocation motor: Structural conservation between the human and yeast Tim14/Pam18-Tim16/Pam16 co-chaperones. Int J Mol Sci 10: 2041–2053 doi:10.3390/ijms10052041
25. ChacinskaA, KoehlerCM, MilenkovicD, LithgowT, PfannerN (2009) Importing mitochondrial proteins: machineries and mechanisms. Cell 138: 628–644 doi:10.1016/j.cell.2009.08.005
26. SparkesR, PattonD, BernierF (2007) Cardiac features of a novel autosomal recessive dilated cardiomyopathic syndrome due to defective importation of mitochondrial protein. Cardiol Young 17: 215–217 doi:10.1017/S1047951107000042
27. DaveyKM, ParboosinghJS, McLeodDR, ChanA, CaseyR, et al. (2006) Mutation of DNAJC19, a human homologue of yeast inner mitochondrial membrane co-chaperones, causes DCMA syndrome, a novel autosomal recessive Barth syndrome-like condition. J Med Genet 43: 385–393 doi:10.1136/jmg.2005.036657
28. D'SilvaPR, SchilkeB, HayashiM, CraigEA (2007) Interaction of the J-Protein Heterodimer Pam18/Pam16 of the Mitochondrial Import Motor with the Translocon of the Inner Membrane. Mol Biol Cell 19: 424–432 doi:10.1091/mbc.E07-08-0748
29. ThielCT, HornD, ZabelB, EkiciAB, SalinasK, et al. (2005) Severely incapacitating mutations in patients with extreme short stature identify RNA-processing endoribonuclease RMRP as an essential cell growth regulator. Am J Hum Genet 77: 795–806 doi:10.1086/497708
30. RidanpääM, van EenennaamH, PelinK, ChadwickR, JohnsonC, et al. (2001) Mutations in the RNA component of RNase MRP cause a pleiotropic human disease, cartilage-hair hypoplasia. Cell 104: 195–203.
31. BonaféL, SchmittK, EichG, GiedionA, Superti-FurgaA (2002) RMRP gene sequence analysis confirms a cartilage-hair hypoplasia variant with only skeletal manifestations and reveals a high density of single-nucleotide polymorphisms. Clin Genet 61: 146–151.
32. LuQ, WierzbickiS, KrasilnikovAS, SchmittME (2010) Comparison of mitochondrial and nucleolar RNase MRP reveals identical RNA components with distinct enzymatic activities and protein components. RNA N Y N 16: 529–537 doi:10.1261/rna.1893710
33. GlazovEA, ZanklA, DonskoiM, KennaTJ, ThomasGP, et al. (2011) Whole-exome re-sequencing in a family quartet identifies POP1 mutations as the cause of a novel skeletal dysplasia. PLoS Genet 7: e1002027 doi:10.1371/journal.pgen.1002027
34. MillerSA, DykesDD, PoleskyHF (1988) A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 16: 1215.
35. SulonenA-M, EllonenP, AlmusaH, LepistöM, EldforsS, et al. (2011) Comparison of solution-based exome capture methods for next generation sequencing. Genome Biol 12: R94 doi:10.1186/gb-2011-12-9-r94
36. LiH, DurbinR (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinforma Oxf Engl 25: 1754–1760 doi:10.1093/bioinformatics/btp324
37. McKennaA, HannaM, BanksE, SivachenkoA, CibulskisK, et al. (2010) The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20: 1297–1303 doi:10.1101/gr.107524.110
38. WangK, LiM, HakonarsonH (2010) ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 38: e164 doi:10.1093/nar/gkq603
39. SchiestlRH, GietzRD (1989) High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier. Curr Genet 16: 339–346.
40. SikorskiRS, BoekeJD (1991) In vitro mutagenesis and plasmid shuffling: from cloned gene to mutant yeast. Methods Enzymol 194: 302–318.
41. WestermannB, NeupertW (2000) Mitochondria-targeted green fluorescent proteins: convenient tools for the study of organelle biogenesis in Saccharomyces cerevisiae. Yeast 16: 1421–1427 doi:10.1002/1097-0061(200011)16:15<1421::AID-YEA624>3.0.CO;2-U
42. KuraviK, NagotuS, KrikkenAM, SjollemaK, DeckersM, et al. (2006) Dynamin-related proteins Vps1p and Dnm1p control peroxisome abundance in Saccharomyces cerevisiae. J Cell Sci 119: 3994–4001 doi:10.1242/jcs.03166
Štítky
Genetika Reprodukčná medicínaČlánok vyšiel v časopise
PLOS Genetics
2014 Číslo 5
- Gynekologové a odborníci na reprodukční medicínu se sejdou na prvním virtuálním summitu
- Je „freeze-all“ pro všechny? Odborníci na fertilitu diskutovali na virtuálním summitu
Najčítanejšie v tomto čísle
- PINK1-Parkin Pathway Activity Is Regulated by Degradation of PINK1 in the Mitochondrial Matrix
- Phosphorylation of a WRKY Transcription Factor by MAPKs Is Required for Pollen Development and Function in
- Null Mutation in PGAP1 Impairing Gpi-Anchor Maturation in Patients with Intellectual Disability and Encephalopathy
- p53 Requires the Stress Sensor USF1 to Direct Appropriate Cell Fate Decision