#PAGE_PARAMS# #ADS_HEAD_SCRIPTS# #MICRODATA#

Mlh2 Is an Accessory Factor for DNA Mismatch Repair in


Lynch syndrome (hereditary nonpolyposis colorectal cancer or HNPCC) is a common cancer predisposition syndrome. In this syndrome, predisposition to cancer results from increased accumulation of mutations due to defective mismatch repair (MMR) caused by a mutation in one of the human mismatch repair genes MLH1, MSH2, MSH6 or PMS2. In addition to these genes, various DNA replication factors and the excision factor EXO1 function in the repair of damaged DNA by the MMR pathway. In Saccharomyces cerevisiae, the MLH2 gene encodes a MutL homolog protein whose role in DNA mismatch repair has been unclear. Here, we used phylogenetic analysis to demonstrate that the S. cerevisiae Mlh2 protein and the mammalian Pms1 protein are homologs. A combination of genetics, biochemistry and imaging studies were used to demonstrate that the Mlh1-Mlh2 complex is recruited to mispair-containing DNA by the Msh2-Msh6 and Msh2-Msh3 mispair recognition complexes where it forms foci that colocalize with Mlh1-Pms1 foci (note that scPms1 is the homolog of hPms2) and augments the function of the Mlh1-Pms1 complex. Thus, this work establishes the Mlh1-Mlh2 complex as a non-essential accessory factor that functions in MMR.


Vyšlo v časopise: Mlh2 Is an Accessory Factor for DNA Mismatch Repair in. PLoS Genet 10(5): e32767. doi:10.1371/journal.pgen.1004327
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1004327

Souhrn

Lynch syndrome (hereditary nonpolyposis colorectal cancer or HNPCC) is a common cancer predisposition syndrome. In this syndrome, predisposition to cancer results from increased accumulation of mutations due to defective mismatch repair (MMR) caused by a mutation in one of the human mismatch repair genes MLH1, MSH2, MSH6 or PMS2. In addition to these genes, various DNA replication factors and the excision factor EXO1 function in the repair of damaged DNA by the MMR pathway. In Saccharomyces cerevisiae, the MLH2 gene encodes a MutL homolog protein whose role in DNA mismatch repair has been unclear. Here, we used phylogenetic analysis to demonstrate that the S. cerevisiae Mlh2 protein and the mammalian Pms1 protein are homologs. A combination of genetics, biochemistry and imaging studies were used to demonstrate that the Mlh1-Mlh2 complex is recruited to mispair-containing DNA by the Msh2-Msh6 and Msh2-Msh3 mispair recognition complexes where it forms foci that colocalize with Mlh1-Pms1 foci (note that scPms1 is the homolog of hPms2) and augments the function of the Mlh1-Pms1 complex. Thus, this work establishes the Mlh1-Mlh2 complex as a non-essential accessory factor that functions in MMR.


Zdroje

1. HarfeBD, Jinks-RobertsonS (2000) DNA mismatch repair and genetic instability. Annu Rev Genet 34: 359–399.

2. HombauerH, SrivatsanA, PutnamCD, KolodnerRD (2011) Mismatch repair, but not heteroduplex rejection, is temporally coupled to DNA replication. Science 334: 1713–1716.

3. IyerRR, PluciennikA, BurdettV, ModrichPL (2006) DNA mismatch repair: functions and mechanisms. Chem Rev 106: 302–323.

4. ModrichP, LahueR (1996) Mismatch repair in replication fidelity, genetic recombination, and cancer biology. Annu Rev Biochem 65: 101–133.

5. KolodnerRD, MarsischkyGT (1999) Eukaryotic DNA mismatch repair. Curr Opin Genet Dev 9: 89–96.

6. Lobner-OlesenA, SkovgaardO, MarinusMG (2005) Dam methylation: coordinating cellular processes. Curr Opin Microbiol 8: 154–160.

7. BrezellecP, HoebekeM, HietMS, PasekS, FeratJL (2006) DomainSieve: a protein domain-based screen that led to the identification of dam-associated genes with potential link to DNA maintenance. Bioinformatics 22: 1935–1941.

8. BarbeyronT, KeanK, ForterreP (1984) DNA adenine methylation of GATC sequences appeared recently in the Escherichia coli lineage. J Bacteriol 160: 586–590.

9. PluciennikA, DzantievL, IyerRR, ConstantinN, KadyrovFA, et al. (2010) PCNA function in the activation and strand direction of MutLalpha endonuclease in mismatch repair. Proc Natl Acad Sci U S A 107: 16066–16071.

10. KadyrovFA, HolmesSF, AranaME, LukianovaOA, O'DonnellM, et al. (2007) Saccharomyces cerevisiae MutLalpha is a mismatch repair endonuclease. J Biol Chem 282: 37181–37190.

11. KadyrovFA, DzantievL, ConstantinN, ModrichP (2006) Endonucleolytic function of MutLalpha in human mismatch repair. Cell 126: 297–308.

12. KosinskiJ, PlotzG, GuarneA, BujnickiJM, FriedhoffP (2008) The PMS2 subunit of human MutLalpha contains a metal ion binding domain of the iron-dependent repressor protein family. J Mol Biol 382: 610–627.

13. SmithCE, MendilloML, BowenN, HombauerH, CampbellCS, et al. (2013) Dominant mutations in Saccharomyces cerevisiae PMS1 identify the Mlh1-Pms1 endonuclease active site and an Exonuclease 1-independent mismatch repair pathway. PLoS 9: e1003869.

14. ErdenizN, NguyenM, DeschenesSM, LiskayRM (2007) Mutations affecting a putative MutLalpha endonuclease motif impact multiple mismatch repair functions. DNA Repair (Amst) 6: 1463–1470.

15. DeschenesSM, TomerG, NguyenM, ErdenizN, JubaNC, et al. (2007) The E705K mutation in hPMS2 exerts recessive, not dominant, effects on mismatch repair. Cancer Lett 249: 148–156.

16. PillonMC, LorenowiczJJ, UckelmannM, KlockoAD, MitchellRR, et al. (2010) Structure of the endonuclease domain of MutL: unlicensed to cut. Mol Cell 39: 145–151.

17. MaurisJ, EvansTC (2009) Adenosine triphosphate stimulates Aquifex aeolicus MutL endonuclease activity. PLoS One 4: e7175.

18. CorreaEM, MartinaMA, De TullioL, ArgaranaCE, BarraJL (2011) Some amino acids of the Pseudomonas aeruginosa MutL D(Q/M)HA(X)(2)E(X)(4)E conserved motif are essential for the in vivo function of the protein but not for the in vitro endonuclease activity. DNA Repair (Amst) 10: 1106–1113.

19. NamaduraiS, JainD, KulkarniDS, TabibCR, FriedhoffP, et al. (2010) The C-terminal domain of the MutL homolog from Neisseria gonorrhoeae forms an inverted homodimer. PLoS One 5: e13726.

20. DuppatlaV, BoddaC, UrbankeC, FriedhoffP, RaoDN (2009) The C-terminal domain is sufficient for endonuclease activity of Neisseria gonorrhoeae MutL. Biochem J 423: 265–277.

21. Flores-RozasH, KolodnerRD (1998) The Saccharomyces cerevisiae MLH3 gene functions in MSH3-dependent suppression of frameshift mutations. Proc Natl Acad Sci U S A 95: 12404–12409.

22. HarfeBD, MinesingerBK, Jinks-RobertsonS (2000) Discrete in vivo roles for the MutL homologs Mlh2p and Mlh3p in the removal of frameshift intermediates in budding yeast. Curr Biol 10: 145–148.

23. RomanovaNV, CrouseGF (2013) Different roles of eukaryotic MutS and MutL complexes in repair of small insertion and deletion loops in yeast. PLoS Genet 9: e1003920.

24. De MuytA, JessopL, KolarE, SourirajanA, ChenJ, et al. (2012) BLM helicase ortholog Sgs1 is a central regulator of meiotic recombination intermediate metabolism. Mol Cell 46: 43–53.

25. WangTF, KlecknerN, HunterN (1999) Functional specificity of MutL homologs in yeast: evidence for three Mlh1-based heterocomplexes with distinct roles during meiosis in recombination and mismatch correction. Proc Natl Acad Sci U S A 96: 13914–13919.

26. ZakharyevichK, TangS, MaY, HunterN (2012) Delineation of joint molecule resolution pathways in meiosis identifies a crossover-specific resolvase. Cell 149: 334–347.

27. NishantKT, PlysAJ, AlaniE (2008) A mutation in the putative MLH3 endonuclease domain confers a defect in both mismatch repair and meiosis in Saccharomyces cerevisiae. Genetics 179: 747–755.

28. RogachevaMV, ManhartCM, ChenC, GuarneA, SurteesJ, et al. (2014) Mlh1-Mlh3, A Meiotic Crossover and DNA Mismatch Repair Factor, is a Msh2-Msh3-Stimulated Endonuclease. J Biol Chem 289: 5664–73.

29. RanjhaL, AnandR, CejkaP (2014) The Saccaromyces cerevisiae Mlh1-Mlh3 heterodimer is an endonuclease that preferentially binds to Holliday junctions. J Biol Chem 289: 5674–86.

30. DurantST, MorrisMM, IllandM, McKayHJ, McCormickC, et al. (1999) Dependence on RAD52 and RAD1 for anticancer drug resistance mediated by inactivation of mismatch repair genes. Curr Biol 9: 51–54.

31. AbdullahMF, HoffmannER, CottonVE, BortsRH (2004) A role for the MutL homologue MLH2 in controlling heteroduplex formation and in regulating between two different crossover pathways in budding yeast. Cytogenet Genome Res 107: 180–190.

32. SugawaraN, GoldfarbT, StudamireB, AlaniE, HaberJE (2004) Heteroduplex rejection during single-strand annealing requires Sgs1 helicase and mismatch repair proteins Msh2 and Msh6 but not Pms1. Proc Natl Acad Sci U S A 101: 9315–9320.

33. HombauerH, CampbellCS, SmithCE, DesaiA, KolodnerRD (2011) Visualization of eukaryotic DNA mismatch repair reveals distinct recognition and repair intermediates. Cell 147: 1040–1053.

34. BowersJ, TranPT, LiskayRM, AlaniE (2000) Analysis of yeast MSH2-MSH6 suggests that the initiation of mismatch repair can be separated into discrete steps. J Mol Biol 302: 327–338.

35. PursellZF, IsozI, LundstromEB, JohanssonE, KunkelTA (2007) Yeast DNA polymerase epsilon participates in leading-strand DNA replication. Science 317: 127–130.

36. Nick McElhinnySA, StithCM, BurgersPM, KunkelTA (2007) Inefficient proofreading and biased error rates during inaccurate DNA synthesis by a mutant derivative of Saccharomyces cerevisiae DNA polymerase delta. J Biol Chem 282: 2324–2332.

37. MorrisonA, JohnsonAL, JohnstonLH, SuginoA (1993) Pathway correcting DNA replication errors in Saccharomyces cerevisiae. EMBO J 12: 1467–1473.

38. KroganNJ, CagneyG, YuH, ZhongG, GuoX, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440: 637–643.

39. GavinAC, AloyP, GrandiP, KrauseR, BoescheM, et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature 440: 631–636.

40. CollinsSR, KemmerenP, ZhaoXC, GreenblattJF, SpencerF, et al. (2007) Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae. Mol Cell Proteomics 6: 439–450.

41. HongZ, JiangJ, HashiguchiK, HoshiM, LanL, et al. (2008) Recruitment of mismatch repair proteins to the site of DNA damage in human cells. J Cell Sci 121: 3146–3154.

42. LibertiSE, AndersenSD, WangJ, MayA, MironS, et al. (2011) Bi-directional routing of DNA mismatch repair protein human exonuclease 1 to replication foci and DNA double strand breaks. DNA Repair (Amst) 10: 73–86.

43. RoesnerLM, MielkeC, FahnrichS, MerkhofferY, DittmarKE, et al. (2013) Stable expression of MutLgamma in human cells reveals no specific response to mismatched DNA, but distinct recruitment to damage sites. J Cell Biochem 114: 2405–2414.

44. LisbyM, MortensenUH, RothsteinR (2003) Colocalization of multiple DNA double-strand breaks at a single Rad52 repair centre. Nat Cell Biol 5: 572–577.

45. LisbyM, BarlowJH, BurgessRC, RothsteinR (2004) Choreography of the DNA damage response: spatiotemporal relationships among checkpoint and repair proteins. Cell 118: 699–713.

46. MarsischkyGT, FilosiN, KaneMF, KolodnerR (1996) Redundancy of Saccharomyces cerevisiae MSH3 and MSH6 in MSH2-dependent mismatch repair. Genes Dev 10: 407–420.

47. YenK, GitshamP, WishartJ, OliverSG, ZhangN (2003) An improved tetO promoter replacement system for regulating the expression of yeast genes. Yeast 20: 1255–1262.

48. MendilloML, MazurDJ, KolodnerRD (2005) Analysis of the interaction between the Saccharomyces cerevisiae MSH2-MSH6 and MLH1-PMS1 complexes with DNA using a reversible DNA end-blocking system. J Biol Chem 280: 22245–22257.

49. HabrakenY, SungP, PrakashL, PrakashS (1996) Binding of insertion/deletion DNA mismatches by the heterodimer of yeast mismatch repair proteins MSH2 and MSH3. Curr Biol 6: 1185–1187.

50. DowenJM, PutnamCD, KolodnerRD (2010) Functional studies and homology modeling of Msh2-Msh3 predict that mispair recognition involves DNA bending and strand separation. Mol Cell Biol 30: 3321–3328.

51. SrivatsanA, BowenN, KolodnerRD (2014) Mispair-specific recruitment of the Mlh1-Pms1 complex identifies repair substrates of the Saccharomyces cerevisiae Msh2-Msh3 complex. J Biol Chem 289: 9352–64.

52. AltschulSF, GishW, MillerW, MyersEW, LipmanDJ (1990) Basic local alignment search tool. J Mol Biol 215: 403–410.

53. ByrneKP, WolfeKH (2006) Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order Browser. Nucleic Acids Res 34: D452–455.

54. WolfeKH, ShieldsDC (1997) Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387: 708–713.

55. ByrneKP, WolfeKH (2005) The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15: 1456–1461.

56. WolfeK (2000) Robustness–it's not where you think it is. Nat Genet 25: 3–4.

57. MasseySE, MouraG, BeltraoP, AlmeidaR, GareyJR, et al. (2003) Comparative evolutionary genomics unveils the molecular mechanism of reassignment of the CTG codon in Candida spp. Genome Res 13: 544–557.

58. RaschleM, MarraG, Nystrom-LahtiM, ScharP, JiricnyJ (1999) Identification of hMutLbeta, a heterodimer of hMLH1 and hPMS1. J Biol Chem 274: 32368–32375.

59. SiehlerSY, SchrauderM, GerischerU, CantorS, MarraG, et al. (2009) Human MutL-complexes monitor homologous recombination independently of mismatch repair. DNA Repair (Amst) 8: 242–252.

60. ProllaTA, BakerSM, HarrisAC, TsaoJL, YaoX, et al. (1998) Tumour susceptibility and spontaneous mutation in mice deficient in Mlh1, Pms1 and Pms2 DNA mismatch repair. Nat Genet 18: 276–279.

61. ThompsonJF, Moitoso de VargasL, KochC, KahmannR, LandyA (1987) Cellular factors couple recombination with growth phase: characterization of a new component in the lambda site-specific recombination pathway. Cell 50: 901–908.

62. AminNS, NguyenMN, OhS, KolodnerRD (2001) exo1-Dependent mutator mutations: model system for studying functional interactions in mismatch repair. Mol Cell Biol 21: 5142–5155.

63. Mine-HattabJ, RothsteinR (2012) Increased chromosome mobility facilitates homology search during recombination. Nat Cell Biol 14: 510–517.

64. JankeC, MagieraMM, RathfelderN, TaxisC, ReberS, et al. (2004) A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes. Yeast 21: 947–962.

65. LiL, MurphyKM, KanevetsU, Reha-KrantzLJ (2005) Sensitivity to phosphonoacetic acid: a new phenotype to probe DNA polymerase delta in Saccharomyces cerevisiae. Genetics 170: 569–580.

66. MorrisonA, BellJB, KunkelTA, SuginoA (1991) Eukaryotic DNA polymerase amino acid sequence required for 3′----5′ exonuclease activity. Proc Natl Acad Sci U S A 88: 9473–9477.

67. LeaDE, CoulsonCA (1948) The distribution of numbers of mutants in bacterial populations. J Genet 49: 264–285.

68. HargreavesVV, ShellSS, MazurDJ, HessMT, KolodnerRD (2010) Interaction between the Msh2 and Msh6 nucleotide-binding sites in the Saccharomyces cerevisiae Msh2-Msh6 complex. J Biol Chem 285: 9301–9310.

69. BowenN, SmithCE, SrivatsanA, WillcoxS, GriffithJD, et al. (2013) Reconstitution of long and short patch mismatch repair reactions using Saccharomyces cerevisiae proteins. Proc Natl Acad Sci U S A 110: 18472–18477.

70. ShellSS, PutnamCD, KolodnerRD (2007) Chimeric Saccharomyces cerevisiae Msh6 protein with an Msh3 mispair-binding domain combines properties of both proteins. Proc Natl Acad Sci U S A 104: 10956–10961.

71. AntonyE, HingoraniMM (2003) Mismatch recognition-coupled stabilization of Msh2-Msh6 in an ATP-bound state at the initiation of DNA repair. Biochemistry 42: 7682–7693.

72. HarringtonJM, KolodnerRD (2007) Saccharomyces cerevisiae Msh2-Msh3 acts in repair of base-base mispairs. Mol Cell Biol 27: 6546–6554.

73. KatohK, StandleyDM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30: 772–780.

74. RonquistF, TeslenkoM, van der MarkP, AyresDL, DarlingA, et al. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61: 539–542.

75. KurtzmanCP, RobnettCJ (2013) Relationships among genera of the Saccharomycotina (Ascomycota) from multigene phylogenetic analysis of type species. FEMS Yeast Res 13: 23–33.

76. FitzpatrickDA, LogueME, StajichJE, ButlerG (2006) A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis. BMC Evol Biol 6: 99.

77. WangH, XuZ, GaoL, HaoB (2009) A fungal phylogeny based on 82 complete genomes using the composition vector method. BMC Evol Biol 9: 195.

Štítky
Genetika Reprodukčná medicína

Článok vyšiel v časopise

PLOS Genetics


2014 Číslo 5
Najčítanejšie tento týždeň
Najčítanejšie v tomto čísle
Kurzy

Zvýšte si kvalifikáciu online z pohodlia domova

Aktuální možnosti diagnostiky a léčby litiáz
nový kurz
Autori: MUDr. Tomáš Ürge, PhD.

Všetky kurzy
Prihlásenie
Zabudnuté heslo

Zadajte e-mailovú adresu, s ktorou ste vytvárali účet. Budú Vám na ňu zasielané informácie k nastaveniu nového hesla.

Prihlásenie

Nemáte účet?  Registrujte sa

#ADS_BOTTOM_SCRIPTS#