DNA Repair Cofactors ATMIN and NBS1 Are Required to Suppress T Cell Activation
Defects in DNA repair pathways can lead to pathogenesis within the immune system, an example of which is inflammatory bowel disease (IBD). Yet the underlying genetic causes of IBD are often unclear. The DNA repair kinase ATM is crucial for the proper development and function of the immune system. ATM is regulated in a stimulus dependent manner by its cofactors, ATMIN and NBS1. These cofactors compete for ATM binding and in doing so regulate ATM kinase activity. Whereas both ATM and NBS1 function in T cell development and in the maintenance of genomic stability within such cells, the role of ATMIN (and the contribution of ATMIN and NBS1) in T cell function is unknown. Here, we show that whereas NBS1 has distinct ATMIN-independent functions during VDJ recombination, loss of both cofactors resulted in exacerbated DNA damage, T cell hyperactivation, inflammation and an IBD phenotype. The pathology was driven by T cells largely proficient for both ATMIN and NBS1. These data demonstrate additive effects revealed upon loss of both ATMIN and NBS1, thus illustrating the importance of these two DNA repair cofactors in proper T cell development and function.
Vyšlo v časopise:
DNA Repair Cofactors ATMIN and NBS1 Are Required to Suppress T Cell Activation. PLoS Genet 11(11): e32767. doi:10.1371/journal.pgen.1005645
Kategorie:
Research Article
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.pgen.1005645
Souhrn
Defects in DNA repair pathways can lead to pathogenesis within the immune system, an example of which is inflammatory bowel disease (IBD). Yet the underlying genetic causes of IBD are often unclear. The DNA repair kinase ATM is crucial for the proper development and function of the immune system. ATM is regulated in a stimulus dependent manner by its cofactors, ATMIN and NBS1. These cofactors compete for ATM binding and in doing so regulate ATM kinase activity. Whereas both ATM and NBS1 function in T cell development and in the maintenance of genomic stability within such cells, the role of ATMIN (and the contribution of ATMIN and NBS1) in T cell function is unknown. Here, we show that whereas NBS1 has distinct ATMIN-independent functions during VDJ recombination, loss of both cofactors resulted in exacerbated DNA damage, T cell hyperactivation, inflammation and an IBD phenotype. The pathology was driven by T cells largely proficient for both ATMIN and NBS1. These data demonstrate additive effects revealed upon loss of both ATMIN and NBS1, thus illustrating the importance of these two DNA repair cofactors in proper T cell development and function.
Zdroje
1. Dudley DD, Chaudhuri J, Bassing CH, Alt FW (2005) Mechanism and control of V(D)J recombination versus class switch recombination: similarities and differences. Adv Immunol 86: 43–112. 15705419
2. Shiloh Y, Ziv Y (2013) The ATM protein kinase: regulating the cellular response to genotoxic stress, and more. Nat Rev Mol Cell Biol 14: 197–210. doi: 10.1038/nrm3546 23847781
3. Barlow C, Hirotsune S, Paylor R, Liyanage M, Eckhaus M, et al. (1996) Atm-deficient mice: a paradigm of ataxia telangiectasia. Cell 86: 159–171. 8689683
4. Callen E, Jankovic M, Difilippantonio S, Daniel JA, Chen HT, et al. (2007) ATM prevents the persistence and propagation of chromosome breaks in lymphocytes. Cell 130: 63–75. 17599403
5. Camacho E, Hernandez L, Hernandez S, Tort F, Bellosillo B, et al. (2002) ATM gene inactivation in mantle cell lymphoma mainly occurs by truncating mutations and missense mutations involving the phosphatidylinositol-3 kinase domain and is associated with increasing numbers of chromosomal imbalances. Blood 99: 238–244. 11756177
6. Fang NY, Greiner TC, Weisenburger DD, Chan WC, Vose JM, et al. (2003) Oligonucleotide microarrays demonstrate the highest frequency of ATM mutations in the mantle cell subtype of lymphoma. Proc Natl Acad Sci U S A 100: 5372–5377. 12697903
7. Haidar MA, Kantarjian H, Manshouri T, Chang CY, O'Brien S, et al. (2000) ATM gene deletion in patients with adult acute lymphoblastic leukemia. Cancer 88: 1057–1062. 10699895
8. Schaffner C, Idler I, Stilgenbauer S, Dohner H, Lichter P (2000) Mantle cell lymphoma is characterized by inactivation of the ATM gene. Proc Natl Acad Sci U S A 97: 2773–2778. 10706620
9. Stankovic T, Stewart GS, Byrd P, Fegan C, Moss PA, et al. (2002) ATM mutations in sporadic lymphoid tumours. Leuk Lymphoma 43: 1563–1571. 12400598
10. Stilgenbauer S, Winkler D, Ott G, Schaffner C, Leupolt E, et al. (1999) Molecular characterization of 11q deletions points to a pathogenic role of the ATM gene in mantle cell lymphoma. Blood 94: 3262–3264. 10556216
11. Xu Y, Ashley T, Brainerd EE, Bronson RT, Meyn MS, et al. (1996) Targeted disruption of ATM leads to growth retardation, chromosomal fragmentation during meiosis, immune defects, and thymic lymphoma. Genes Dev 10: 2411–2422. 8843194
12. Zha S, Bassing CH, Sanda T, Brush JW, Patel H, et al. (2010) ATM-deficient thymic lymphoma is associated with aberrant tcrd rearrangement and gene amplification. J Exp Med 207: 1369–1380. doi: 10.1084/jem.20100285 20566716
13. Ito K, Takubo K, Arai F, Satoh H, Matsuoka S, et al. (2007) Regulation of reactive oxygen species by Atm is essential for proper response to DNA double-strand breaks in lymphocytes. J Immunol 178: 103–110. 17182545
14. Barzilai A, Rotman G, Shiloh Y (2002) ATM deficiency and oxidative stress: a new dimension of defective response to DNA damage. DNA Repair (Amst) 1: 3–25.
15. Uziel T, Lerenthal Y, Moyal L, Andegeko Y, Mittelman L, et al. (2003) Requirement of the MRN complex for ATM activation by DNA damage. EMBO J 22: 5612–5621. 14532133
16. Carson CT, Schwartz RA, Stracker TH, Lilley CE, Lee DV, et al. (2003) The Mre11 complex is required for ATM activation and the G2/M checkpoint. EMBO J 22: 6610–6620. 14657032
17. Stracker TH, Petrini JH (2011) The MRE11 complex: starting from the ends. Nat Rev Mol Cell Biol 12: 90–103. doi: 10.1038/nrm3047 21252998
18. Duursma AM, Driscoll R, Elias JE, Cimprich KA (2013) A role for the MRN complex in ATR activation via TOPBP1 recruitment. Mol Cell 50: 116–122. doi: 10.1016/j.molcel.2013.03.006 23582259
19. Lee J, Dunphy WG (2013) The Mre11-Rad50-Nbs1 (MRN) complex has a specific role in the activation of Chk1 in response to stalled replication forks. Mol Biol Cell 24: 1343–1353. doi: 10.1091/mbc.E13-01-0025 23468519
20. Shiotani B, Nguyen HD, Hakansson P, Marechal A, Tse A, et al. (2013) Two distinct modes of ATR activation orchestrated by Rad17 and Nbs1. Cell Rep 3: 1651–1662. doi: 10.1016/j.celrep.2013.04.018 23684611
21. Willis N, Rhind N (2010) The fission yeast Rad32(Mre11)-Rad50-Nbs1 complex acts both upstream and downstream of checkpoint signaling in the S-phase DNA damage checkpoint. Genetics 184: 887–897. doi: 10.1534/genetics.109.113019 20065069
22. Bruhn C, Zhou ZW, Ai H, Wang ZQ (2014) The essential function of the MRN complex in the resolution of endogenous replication intermediates. Cell Rep 6: 182–195. doi: 10.1016/j.celrep.2013.12.018 24388752
23. Mazouzi A, Velimezi G, Loizou JI (2014) DNA replication stress: Causes, resolution and disease. Exp Cell Res 329: 85–93. doi: 10.1016/j.yexcr.2014.09.030 25281304
24. Kracker S, Bergmann Y, Demuth I, Frappart PO, Hildebrand G, et al. (2005) Nibrin functions in Ig class-switch recombination. Proc Natl Acad Sci U S A 102: 1584–1589. 15668383
25. Saidi A, Li T, Weih F, Concannon P, Wang ZQ (2010) Dual functions of Nbs1 in the repair of DNA breaks and proliferation ensure proper V(D)J recombination and T-cell development. Mol Cell Biol 30: 5572–5581. doi: 10.1128/MCB.00917-10 20921278
26. Reina-San-Martin B, Nussenzweig MC, Nussenzweig A, Difilippantonio S (2005) Genomic instability, endoreduplication, and diminished Ig class-switch recombination in B cells lacking Nbs1. Proc Natl Acad Sci U S A 102: 1590–1595. 15668392
27. Difilippantonio S, Celeste A, Fernandez-Capetillo O, Chen HT, Reina San Martin B, et al. (2005) Role of Nbs1 in the activation of the Atm kinase revealed in humanized mouse models. Nat Cell Biol 7: 675–685. 15965469
28. de Miranda NF, Bjorkman A, Pan-Hammarstrom Q (2011) DNA repair: the link between primary immunodeficiency and cancer. Ann N Y Acad Sci 1246: 50–63. doi: 10.1111/j.1749-6632.2011.06322.x 22236430
29. Kanu N, Behrens A (2007) ATMIN defines an NBS1-independent pathway of ATM signalling. EMBO J 26: 2933–2941. 17525732
30. McNees CJ, Conlan LA, Tenis N, Heierhorst J (2005) ASCIZ regulates lesion-specific Rad51 focus formation and apoptosis after methylating DNA damage. EMBO J 24: 2447–2457. 15933716
31. Schmidt L, Wiedner M, Velimezi G, Prochazkova J, Owusu M, et al. (2014) ATMIN is required for the ATM-mediated signaling and recruitment of 53BP1 to DNA damage sites upon replication stress. DNA Repair (Amst).
32. Kanu N, Penicud K, Hristova M, Wong B, Irvine E, et al. (2010) The ATM cofactor ATMIN protects against oxidative stress and accumulation of DNA damage in the aging brain. J Biol Chem 285: 38534–38542. doi: 10.1074/jbc.M110.145896 20889973
33. Loizou JI, Sancho R, Kanu N, Bolland DJ, Yang F, et al. (2011) ATMIN is required for maintenance of genomic stability and suppression of B cell lymphoma. Cancer Cell 19: 587–600. doi: 10.1016/j.ccr.2011.03.022 21575860
34. Jurado S, Gleeson K, O'Donnell K, Izon DJ, Walkley CR, et al. (2012) The Zinc-finger protein ASCIZ regulates B cell development via DYNLL1 and Bim. J Exp Med 209: 1629–1639. doi: 10.1084/jem.20120785 22891272
35. Zhang T, Penicud K, Bruhn C, Loizou JI, Kanu N, et al. (2012) Competition between NBS1 and ATMIN controls ATM signaling pathway choice. Cell Rep 2: 1498–1504. doi: 10.1016/j.celrep.2012.11.002 23219553
36. Zenewicz LA, Antov A, Flavell RA (2009) CD4 T-cell differentiation and inflammatory bowel disease. Trends Mol Med 15: 199–207. doi: 10.1016/j.molmed.2009.03.002 19362058
37. Jeggo PA, Lobrich M (2007) DNA double-strand breaks: their cellular and clinical impact? Oncogene 26: 7717–7719. 18066083
38. Niehues T, Perez-Becker R, Schuetz C (2010) More than just SCID—the phenotypic range of combined immunodeficiencies associated with mutations in the recombinase activating genes (RAG) 1 and 2. Clin Immunol 135: 183–192. doi: 10.1016/j.clim.2010.01.013 20172764
39. Takahashi N, Matsumoto K, Saito H, Nanki T, Miyasaka N, et al. (2009) Impaired CD4 and CD8 effector function and decreased memory T cell populations in ICOS-deficient patients. J Immunol 182: 5515–5527. doi: 10.4049/jimmunol.0803256 19380800
40. Abolhassani H, Wang N, Aghamohammadi A, Rezaei N, Lee YN, et al. (2014) A hypomorphic recombination-activating gene 1 (RAG1) mutation resulting in a phenotype resembling common variable immunodeficiency. J Allergy Clin Immunol 134: 1375–1380. doi: 10.1016/j.jaci.2014.04.042 24996264
41. Agarwal S, Smereka P, Harpaz N, Cunningham-Rundles C, Mayer L (2011) Characterization of immunologic defects in patients with common variable immunodeficiency (CVID) with intestinal disease. Inflamm Bowel Dis 17: 251–259. doi: 10.1002/ibd.21376 20629103
42. Hartlova A, Erttmann SF, Raffi FA, Schmalz AM, Resch U, et al. (2015) DNA damage primes the type I interferon system via the cytosolic DNA sensor STING to promote anti-microbial innate immunity. Immunity 42: 332–343. doi: 10.1016/j.immuni.2015.01.012 25692705
43. Frappart PO, Tong WM, Demuth I, Radovanovic I, Herceg Z, et al. (2005) An essential function for NBS1 in the prevention of ataxia and cerebellar defects. Nat Med 11: 538–544. 15821748
44. de Boer J, Williams A, Skavdis G, Harker N, Coles M, et al. (2003) Transgenic mice with hematopoietic and lymphoid specific expression of Cre. Eur J Immunol 33: 314–325. 12548562
45. Nyabi O, Naessens M, Haigh K, Gembarska A, Goossens S, et al. (2009) Efficient mouse transgenesis using Gateway-compatible ROSA26 locus targeting vectors and F1 hybrid ES cells. Nucleic Acids Res 37: e55. doi: 10.1093/nar/gkp112 19279185
46. Vacchio MS, Olaru A, Livak F, Hodes RJ (2007) ATM deficiency impairs thymocyte maturation because of defective resolution of T cell receptor alpha locus coding end breaks. Proc Natl Acad Sci U S A 104: 6323–6328. 17405860
47. Kolaczkowska E, Kubes P (2013) Neutrophil recruitment and function in health and inflammation. Nat Rev Immunol 13: 159–175. doi: 10.1038/nri3399 23435331
48. Perse M, Cerar A (2012) Dextran sodium sulphate colitis mouse model: traps and tricks. J Biomed Biotechnol 2012: 718617. doi: 10.1155/2012/718617 22665990
49. Westbrook AM, Schiestl RH (2010) Atm-deficient mice exhibit increased sensitivity to dextran sulfate sodium-induced colitis characterized by elevated DNA damage and persistent immune activation. Cancer Res 70: 1875–1884. doi: 10.1158/0008-5472.CAN-09-2584 20179206
50. Daniel JA, Pellegrini M, Lee BS, Guo Z, Filsuf D, et al. (2012) Loss of ATM kinase activity leads to embryonic lethality in mice. J Cell Biol 198: 295–304. doi: 10.1083/jcb.201204035 22869595
51. Yamamoto K, Wang Y, Jiang W, Liu X, Dubois RL, et al. (2012) Kinase-dead ATM protein causes genomic instability and early embryonic lethality in mice. J Cell Biol 198: 305–313. doi: 10.1083/jcb.201204098 22869596
52. Shinkai Y, Rathbun G, Lam KP, Oltz EM, Stewart V, et al. (1992) RAG-2-deficient mice lack mature lymphocytes owing to inability to initiate V(D)J rearrangement. Cell 68: 855–867. 1547487
53. Konca K, Lankoff A, Banasik A, Lisowska H, Kuszewski T, et al. (2003) A cross-platform public domain PC image-analysis program for the comet assay. Mutat Res 534: 15–20. 12504751
54. Carpenter AE, Jones TR, Lamprecht MR, Clarke C, Kang IH, et al. (2006) CellProfiler: image analysis software for identifying and quantifying cell phenotypes. Genome Biol 7: R100. 17076895
Štítky
Genetika Reprodukčná medicínaČlánok vyšiel v časopise
PLOS Genetics
2015 Číslo 11
- Je „freeze-all“ pro všechny? Odborníci na fertilitu diskutovali na virtuálním summitu
- Gynekologové a odborníci na reprodukční medicínu se sejdou na prvním virtuálním summitu
Najčítanejšie v tomto čísle
- UFBP1, a Key Component of the Ufm1 Conjugation System, Is Essential for Ufmylation-Mediated Regulation of Erythroid Development
- Metabolomic Quantitative Trait Loci (mQTL) Mapping Implicates the Ubiquitin Proteasome System in Cardiovascular Disease Pathogenesis
- Ernst Rüdin’s Unpublished 1922-1925 Study “Inheritance of Manic-Depressive Insanity”: Genetic Research Findings Subordinated to Eugenic Ideology
- Genetic Interactions Implicating Postreplicative Repair in Okazaki Fragment Processing