Longitudinal Genome-Wide Association of Cardiovascular Disease Risk Factors in the Bogalusa Heart Study
Cardiovascular disease (CVD) is the leading cause of death worldwide. Recent genome-wide association (GWA) studies have pinpointed many loci associated with CVD risk factors in adults. It is unclear, however, if these loci predict trait levels at all ages, if they are associated with how a trait develops over time, or if they could be used to screen individuals who are pre-symptomatic to provide the opportunity for preventive measures before disease onset. We completed a genome-wide association study on participants in the longitudinal Bogalusa Heart Study (BHS) and have characterized the association between genetic factors and the development of CVD risk factors from childhood to adulthood. We report 7 genome-wide significant associations involving CVD risk factors, two of which have been previously reported. Top regions were tested for replication in the Young Finns Study (YF) and two associations strongly replicated: rs247616 in CETP with HDL levels (combined P = 9.7×10−24), and rs445925 at APOE with LDL levels (combined P = 8.7×10−19). We show that SNPs previously identified in adult cross-sectional studies tend to show age-independent effects in the BHS with effect sizes consistent with previous reports. Previously identified variants were associated with adult trait levels above and beyond those seen in childhood; however, variants with time-dependent effects were also promising predictors. This is the first GWA study to evaluate the role of common genetic variants in the development of CVD risk factors in children as they advance through adulthood and highlights the utility of using longitudinal studies to identify genetic predictors of adult traits in children.
Vyšlo v časopise:
Longitudinal Genome-Wide Association of Cardiovascular Disease Risk Factors in the Bogalusa Heart Study. PLoS Genet 6(9): e32767. doi:10.1371/journal.pgen.1001094
Kategorie:
Research Article
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.pgen.1001094
Souhrn
Cardiovascular disease (CVD) is the leading cause of death worldwide. Recent genome-wide association (GWA) studies have pinpointed many loci associated with CVD risk factors in adults. It is unclear, however, if these loci predict trait levels at all ages, if they are associated with how a trait develops over time, or if they could be used to screen individuals who are pre-symptomatic to provide the opportunity for preventive measures before disease onset. We completed a genome-wide association study on participants in the longitudinal Bogalusa Heart Study (BHS) and have characterized the association between genetic factors and the development of CVD risk factors from childhood to adulthood. We report 7 genome-wide significant associations involving CVD risk factors, two of which have been previously reported. Top regions were tested for replication in the Young Finns Study (YF) and two associations strongly replicated: rs247616 in CETP with HDL levels (combined P = 9.7×10−24), and rs445925 at APOE with LDL levels (combined P = 8.7×10−19). We show that SNPs previously identified in adult cross-sectional studies tend to show age-independent effects in the BHS with effect sizes consistent with previous reports. Previously identified variants were associated with adult trait levels above and beyond those seen in childhood; however, variants with time-dependent effects were also promising predictors. This is the first GWA study to evaluate the role of common genetic variants in the development of CVD risk factors in children as they advance through adulthood and highlights the utility of using longitudinal studies to identify genetic predictors of adult traits in children.
Zdroje
1. 2007 NHLBI morbidity and mortality chartbook Bethesda, MD National Heart, Lung, and Blood Institute
2. BonowRO
2002 Primary prevention of cardiovascular disease: a call to action. Circulation 106 3140 3141
3. MathersCD
LoncarD
2006 Projections of global mortality and burden of disease from 2002 to 2030. PLoS Med 3 e442
4. MurrayCJ
LopezAD
1997 Global mortality, disability, and the contribution of risk factors: Global Burden of Disease Study. Lancet 349 1436 1442
5. AulchenkoYS
RipattiS
LindqvistI
BoomsmaD
HeidIM
2009 Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts. Nat Genet 41 47 55
6. KathiresanS
WillerCJ
PelosoGM
DemissieS
MusunuruK
2009 Common variants at 30 loci contribute to polygenic dyslipidemia. Nat Genet 41 56 65
7. Newton-ChehC
JohnsonT
GatevaV
TobinMD
BochudM
2009 Genome-wide association study identifies eight loci associated with blood pressure. Nat Genet 41 666 676
8. LevyD
EhretGB
RiceK
VerwoertGC
LaunerLJ
2009 Genome-wide association study of blood pressure and hypertension. Nat Genet 41 677 687
9. SabattiC
ServiceSK
HartikainenAL
PoutaA
RipattiS
2009 Genome-wide association analysis of metabolic traits in a birth cohort from a founder population. Nat Genet 41 35 46
10. WillerCJ
SannaS
JacksonAU
ScuteriA
BonnycastleLL
2008 Newly identified loci that influence lipid concentrations and risk of coronary artery disease. Nat Genet 40 161 169
11. KeatingBJ
TischfieldS
MurraySS
BhangaleT
PriceTS
2008 Concept, design and implementation of a cardiovascular gene-centric 50 k SNP array for large-scale genomic association studies. PLoS ONE 3 e3583
12. ScottLJ
MohlkeKL
BonnycastleLL
WillerCJ
LiY
2007 A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants. Science 316 1341 1345
13. Jose PinheiroDB
DebRoySaikat
SarkarDeepayan
the R Core team 2009 nlme: Linear and Nonlinear Mixed Effects Models. R package version 3.1-93
14. WalmsleyTA
PotterHC
GeorgePM
FlorkowskiCM
2008 Pseudo-hypertriglyceridaemia: a measurement artefact due to glycerol kinase deficiency. Postgrad Med J 84 552 554
15. SulimanSG
StanikJ
McCullochLJ
WilsonN
EdghillEL
2009 Severe insulin resistance and intrauterine growth deficiency associated with haploinsufficiency for INSR and CHN2: new insights into synergistic pathways involved in growth and metabolism. Diabetes 58 2954 2961
16. BrainSD
WilliamsTJ
TippinsJR
MorrisHR
MacIntyreI
1985 Calcitonin gene-related peptide is a potent vasodilator. Nature 313 54 56
17. SanoM
KuroiN
NakayamaT
SatoN
IzumiY
2005 Association study of calcitonin-receptor-like receptor gene in essential hypertension. Am J Hypertens 18 403 408
18. Bouatia-NajiN
BonnefondA
Cavalcanti-ProencaC
SparsoT
HolmkvistJ
2009 A variant near MTNR1B is associated with increased fasting plasma glucose levels and type 2 diabetes risk. Nat Genet 41 89 94
19. BennetAM
Di AngelantonioE
YeZ
WensleyF
DahlinA
2007 Association of apolipoprotein E genotypes with lipid levels and coronary risk. JAMA 298 1300 1311
20. KathiresanS
MelanderO
GuiducciC
SurtiA
BurttNP
2008 Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans. Nat Genet 40 189 197
21. RaitakariOT
JuonalaM
RonnemaaT
Keltikangas-JarvinenL
RasanenL
2008 Cohort profile: the cardiovascular risk in Young Finns Study. Int J Epidemiol 37 1220 1226
22. EberleMA
NgPC
KuhnK
ZhouL
PeifferDA
2007 Power to detect risk alleles using genome-wide tag SNP panels. PLoS Genet 3 1827 1837
23. TeoYY
InouyeM
SmallKS
GwilliamR
DeloukasP
2007 A genotype calling algorithm for the Illumina BeadArray platform. Bioinformatics 23 2741 2746
24. PurcellS
NealeB
Todd-BrownK
ThomasL
FerreiraMA
2007 PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81 559 575
25. HindorffL
JunkinsH
MehtaJ
ManolioTA
Catalog of Published Genome-Wide Association Studies. Available at: www.genome.gov/gwastudies. Accessed 5/20/09
26. FaulF
ErdfelderE
LangAG
BuchnerA
2007 G*Power 3: a flexible statistical power analysis program for the social, behavioral, and biomedical sciences. Behav Res Methods 39 175 191
27. FalconerDS
MacKayTFC
1996 Introduction to Quantitative Genetics: Benjamin Cummings
Štítky
Genetika Reprodukčná medicínaČlánok vyšiel v časopise
PLOS Genetics
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