Depletion of . GlmU from Infected Murine Lungs Effects the Clearance of the Pathogen
The synthesis of the Mtb cell wall involves a cascade of reactions catalyzed by cytosolic and cell membrane-bound enzymes. The reaction catalyzed by GlmUMtb (an enzyme with acetyltransferase and uridyltransferase activities) generates UDP-GlcNAc, a central nucleotide-sugar building block of the cell wall. Apart from cell wall synthesis UDP-GlcNAc is an essential metabolite participating in other cellular processes including disaccharide linker and mycothiol biosynthesis. GlmUMtb shares very little sequence similarity with eukaryotic acetyltransferase and uridyltransferase enzymes. Many pathogens have alternative pathway(s) for foraging GlcNAc from the host. The present study was undertaken to see the effects of depleting GlmUMtb on pathogen survival in the host animal. We have generated a conditional gene replacement mutant of glmUMtb and find that depletion of GlmUMtb at any stage of bacterial growth or in mice infected with Mtb including a well-established infection, results in irreversible bacterial death due to perturbation of cell wall synthesis. We have developed a novel anti-GlmUMtb inhibitor (Oxa33), identified its binding site on GlmUMtb, and shown its specificity for GlmUMtb. The study demonstrates that GlmUMtb is a promising target for therapeutic intervention and Oxa33 can be pursued as a lead molecule.
Vyšlo v časopise:
Depletion of . GlmU from Infected Murine Lungs Effects the Clearance of the Pathogen. PLoS Pathog 11(10): e32767. doi:10.1371/journal.ppat.1005235
Kategorie:
Research Article
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.ppat.1005235
Souhrn
The synthesis of the Mtb cell wall involves a cascade of reactions catalyzed by cytosolic and cell membrane-bound enzymes. The reaction catalyzed by GlmUMtb (an enzyme with acetyltransferase and uridyltransferase activities) generates UDP-GlcNAc, a central nucleotide-sugar building block of the cell wall. Apart from cell wall synthesis UDP-GlcNAc is an essential metabolite participating in other cellular processes including disaccharide linker and mycothiol biosynthesis. GlmUMtb shares very little sequence similarity with eukaryotic acetyltransferase and uridyltransferase enzymes. Many pathogens have alternative pathway(s) for foraging GlcNAc from the host. The present study was undertaken to see the effects of depleting GlmUMtb on pathogen survival in the host animal. We have generated a conditional gene replacement mutant of glmUMtb and find that depletion of GlmUMtb at any stage of bacterial growth or in mice infected with Mtb including a well-established infection, results in irreversible bacterial death due to perturbation of cell wall synthesis. We have developed a novel anti-GlmUMtb inhibitor (Oxa33), identified its binding site on GlmUMtb, and shown its specificity for GlmUMtb. The study demonstrates that GlmUMtb is a promising target for therapeutic intervention and Oxa33 can be pursued as a lead molecule.
Zdroje
1. Smith I (2003) Mycobacterium tuberculosis pathogenesis and molecular determinants of virulence. Clin Microbiol Rev 16: 463–496. 12857778
2. McNeil MR, Brennan PJ (1991) Structure, function and biogenesis of the cell envelope of mycobacteria in relation to bacterial physiology, pathogenesis and drug resistance; some thoughts and possibilities arising from recent structural information. Res Microbiol 142: 451–463. 1871433
3. Brennan PJ, Nikaido H (1995) The envelope of mycobacteria. Annu Rev Biochem 64: 29–63. 7574484
4. Lee A, Wu SW, Scherman MS, Torrelles JB, Chatterjee D, et al. (2006) Sequencing of oligoarabinosyl units released from mycobacterial arabinogalactan by endogenous arabinanase: identification of distinctive and novel structural motifs. Biochemistry 45: 15817–15828. 17176104
5. Zumla A, Nahid P, Cole ST (2013) Advances in the development of new tuberculosis drugs and treatment regimens. Nat Rev Drug Discov 12: 388–404. doi: 10.1038/nrd4001 23629506
6. Mengin-Lecreulx D, van Heijenoort J (1994) Copurification of glucosamine-1-phosphate acetyltransferase and N-acetylglucosamine-1-phosphate uridyltransferase activities of Escherichia coli: characterization of the glmU gene product as a bifunctional enzyme catalyzing two subsequent steps in the pathway for UDP-N-acetylglucosamine synthesis. J Bacteriol 176: 5788–5795. 8083170
7. Gehring AM, Lees WJ, Mindiola DJ, Walsh CT, Brown ED (1996) Acetyltransfer precedes uridylyltransfer in the formation of UDP-N-acetylglucosamine in separable active sites of the bifunctional GlmU protein of Escherichia coli. Biochemistry 35: 579–585. 8555230
8. Crick DC, Mahapatra S, Brennan PJ (2001) Biosynthesis of the arabinogalactan-peptidoglycan complex of Mycobacterium tuberculosis. Glycobiology 11: 107R–118R. 11555614
9. Alderwick LJ, Birch HL, Mishra AK, Eggeling L, Besra GS (2007) Structure, function and biosynthesis of the Mycobacterium tuberculosis cell wall: arabinogalactan and lipoarabinomannan assembly with a view to discovering new drug targets. Biochem Soc Trans 35: 1325–1328. 17956343
10. Barreteau H, Kovac A, Boniface A, Sova M, Gobec S, et al. (2008) Cytoplasmic steps of peptidoglycan biosynthesis. Fems Microbiology Reviews 32: 168–207. doi: 10.1111/j.1574-6976.2008.00104.x 18266853
11. Birch HL, Alderwick LJ, Bhatt A, Rittmann D, Krumbach K, et al. (2008) Biosynthesis of mycobacterial arabinogalactan: identification of a novel alpha(1—>3) arabinofuranosyltransferase. Mol Microbiol 69: 1191–1206. doi: 10.1111/j.1365-2958.2008.06354.x 18627460
12. Mills JA, Motichka K, Jucker M, Wu HP, Uhlik BC, et al. (2004) Inactivation of the mycobacterial rhamnosyltransferase, which is needed for the formation of the arabinogalactan-peptidoglycan linker, leads to irreversible loss of viability. J Biol Chem 279: 43540–43546. 15294902
13. Dover LG, Cerdeno-Tarraga AM, Pallen MJ, Parkhill J, Besra GS (2004) Comparative cell wall core biosynthesis in the mycolated pathogens, Mycobacterium tuberculosis and Corynebacterium diphtheriae. FEMS Microbiol Rev 28: 225–250. 15109786
14. Vilcheze C, Av-Gay Y, Attarian R, Liu Z, Hazbon MH, et al. (2008) Mycothiol biosynthesis is essential for ethionamide susceptibility in Mycobacterium tuberculosis. Mol Microbiol 69: 1316–1329. doi: 10.1111/j.1365-2958.2008.06365.x 18651841
15. Parikh A, Kumar D, Chawla Y, Kurthkoti K, Khan S, et al. (2013) Development of a new generation of vectors for gene expression, gene replacement, and protein-protein interaction studies in mycobacteria. Appl Environ Microbiol 79: 1718–1729. doi: 10.1128/AEM.03695-12 23315736
16. Verma SK, Jaiswal M, Kumar N, Parikh A, Nandicoori VK, et al. (2009) Structure of N-acetylglucosamine-1-phosphate uridyltransferase (GlmU) from Mycobacterium tuberculosis in a cubic space group. Acta Crystallogr Sect F Struct Biol Cryst Commun 65: 435–439. doi: 10.1107/S1744309109010252 19407371
17. Jagtap PK, Soni V, Vithani N, Jhingan GD, Bais VS, et al. (2012) Substrate-bound crystal structures reveal features unique to Mycobacterium tuberculosis N-acetyl-glucosamine 1-phosphate uridyltransferase and a catalytic mechanism for acetyl transfer. J Biol Chem 287: 39524–39537. doi: 10.1074/jbc.M112.390765 22969087
18. Sassetti CM, Boyd DH, Rubin EJ (2003) Genes required for mycobacterial growth defined by high density mutagenesis. Mol Microbiol 48: 77–84. 12657046
19. Zhang YJ, Ioerger TR, Huttenhower C, Long JE, Sassetti CM, et al. (2012) Global Assessment of Genomic Regions Required for Growth in Mycobacterium tuberculosis. PLoS Pathog 8: e1002946. doi: 10.1371/journal.ppat.1002946 23028335
20. Zhang W, Jones VC, Scherman MS, Mahapatra S, Crick D, et al. (2008) Expression, essentiality, and a microtiter plate assay for mycobacterial GlmU, the bifunctional glucosamine-1-phosphate acetyltransferase and N-acetylglucosamine-1-phosphate uridyltransferase. Int J Biochem Cell Biol 40: 2560–2571. doi: 10.1016/j.biocel.2008.05.003 18573680
21. Jackson M, McNeil MR, Brennan PJ (2013) Progress in targeting cell envelope biogenesis in Mycobacterium tuberculosis. Future Microbiol 8: 855–875. doi: 10.2217/fmb.13.52 23841633
22. Moraes GL, Gomes GC, Monteiro de Sousa PR, Alves CN, Govender T, et al. (2015) Structural and functional features of enzymes of Mycobacterium tuberculosis peptidoglycan biosynthesis as targets for drug development. Tuberculosis (Edinb) 95: 95–111.
23. Urbaniak MD, Collie IT, Fang W, Aristotelous T, Eskilsson S, et al. (2013) A novel allosteric inhibitor of the uridine diphosphate N-acetylglucosamine pyrophosphorylase from Trypanosoma brucei. ACS Chem Biol 8: 1981–1987. doi: 10.1021/cb400411x 23834437
24. Moir DT, Di M, Moore RA, Schweizer HP, Woods DE (2008) Cellular reporter screens for inhibitors of Burkholderia pseudomallei targets in Pseudomonas aeruginosa. Trans R Soc Trop Med Hyg 102 Suppl 1: S152–162. doi: 10.1016/S0035-9203(08)70033-6 19121678
25. Pereira MP, Blanchard JE, Murphy C, Roderick SL, Brown ED (2009) High-throughput screening identifies novel inhibitors of the acetyltransferase activity of Escherichia coli GlmU. Antimicrob Agents Chemother 53: 2306–2311. doi: 10.1128/AAC.01572-08 19349513
26. Doig P, Boriack-Sjodin PA, Dumas J, Hu J, Itoh K, et al. (2014) Rational design of inhibitors of the bacterial cell wall synthetic enzyme GlmU using virtual screening and lead-hopping. Bioorg Med Chem 22: 6256–6269. doi: 10.1016/j.bmc.2014.08.017 25262942
27. Mochalkin I, Lightle S, Narasimhan L, Bornemeier D, Melnick M, et al. (2008) Structure of a small-molecule inhibitor complexed with GlmU from Haemophilus influenzae reveals an allosteric binding site. Protein Sci 17: 577–582. doi: 10.1110/ps.073271408 18218712
28. Buurman ET, Andrews B, Gao N, Hu J, Keating TA, et al. (2011) In vitro validation of acetyltransferase activity of GlmU as an antibacterial target in Haemophilus influenzae. J Biol Chem 286: 40734–40742. doi: 10.1074/jbc.M111.274068 21984832
29. Larsen NA, Nash TJ, Morningstar M, Shapiro AB, Joubran C, et al. (2012) An aminoquinazoline inhibitor of the essential bacterial cell wall synthetic enzyme GlmU has a unique non-protein-kinase-like binding mode. Biochem J 446: 405–413. doi: 10.1042/BJ20120596 22721802
30. Min J, Lin D, Zhang Q, Zhang J, Yu Z (2012) Structure-based virtual screening of novel inhibitors of the uridyltransferase activity of Xanthomonas oryzae pv. oryzae GlmU. Eur J Med Chem 53: 150–158. doi: 10.1016/j.ejmech.2012.03.051 22521370
31. Singh VK, Das K, Seshadri K (2012) Kinetic modelling of GlmU reactions—prioritization of reaction for therapeutic application. PLoS One 7: e43969. doi: 10.1371/journal.pone.0043969 22952829
32. Li Y, Zhou Y, Ma Y, Li X (2011) Design and synthesis of novel cell wall inhibitors of Mycobacterium tuberculosis GlmM and GlmU. Carbohydr Res 346: 1714–1720. doi: 10.1016/j.carres.2011.05.024 21704310
33. Tran AT, Wen D, West NP, Baker EN, Britton WJ, et al. (2013) Inhibition studies on Mycobacterium tuberculosis N-acetylglucosamine-1-phosphate uridyltransferase (GlmU). Org Biomol Chem 11: 8113–8126. doi: 10.1039/c3ob41896k 24158720
34. Chao MC, Rubin EJ (2010) Letting sleeping dos lie: does dormancy play a role in tuberculosis? Annu Rev Microbiol 64: 293–311. doi: 10.1146/annurev.micro.112408.134043 20825351
35. Wayne LG, Hayes LG (1996) An in vitro model for sequential study of shiftdown of Mycobacterium tuberculosis through two stages of nonreplicating persistence. Infect Immun 64: 2062–2069. 8675308
36. Blokpoel MC, Murphy HN, O'Toole R, Wiles S, Runn ES, et al. (2005) Tetracycline-inducible gene regulation in mycobacteria. Nucleic Acids Res 33: e22. 15687380
37. Karakousis PC, Williams EP, Bishai WR (2008) Altered expression of isoniazid-regulated genes in drug-treated dormant Mycobacterium tuberculosis. J Antimicrob Chemother 61: 323–331. 18156607
38. Parikh A, Verma SK, Khan S, Prakash B, Nandicoori VK (2009) PknB-mediated phosphorylation of a novel substrate, N-acetylglucosamine-1-phosphate uridyltransferase, modulates its acetyltransferase activity. J Mol Biol 386: 451–464. doi: 10.1016/j.jmb.2008.12.031 19121323
39. Alavi HA, Moscovic EA (1996) Immunolocalization of cell-wall-deficient forms of Mycobacterium tuberculosis complex in sarcoidosis and in sinus histiocytosis of lymph nodes draining carcinoma. Histol Histopathol 11: 683–694. 8839759
40. BERAN MH V., KAUSTOVA J., DVORSKA L., PAVLIK I. (2006) Cell wall deficient forms of mycobacteria: a review. Veterinarni Medicina 51: 365–389.
41. Sonnenburg JL, Xu J, Leip DD, Chen CH, Westover BP, et al. (2005) Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science 307: 1955–1959. 15790854
42. Renzi F, Manfredi P, Dol M, Fu J, Vincent S, et al. (2015) Glycan-foraging systems reveal the adaptation of Capnocytophaga canimorsus to the dog mouth. MBio 6: e02507. doi: 10.1128/mBio.02507-14 25736888
43. Renzi F, Manfredi P, Mally M, Moes S, Jeno P, et al. (2011) The N-glycan glycoprotein deglycosylation complex (Gpd) from Capnocytophaga canimorsus deglycosylates human IgG. PLoS Pathog 7: e1002118. doi: 10.1371/journal.ppat.1002118 21738475
44. Gisin J, Schneider A, Nagele B, Borisova M, Mayer C (2013) A cell wall recycling shortcut that bypasses peptidoglycan de novo biosynthesis. Nat Chem Biol 9: 491–493. doi: 10.1038/nchembio.1289 23831760
45. Engels FK, Mathot RA, Verweij J (2007) Alternative drug formulations of docetaxel: a review. Anticancer Drugs 18: 95–103. 17159596
46. Coors EA, Seybold H, Merk HF, Mahler V (2005) Polysorbate 80 in medical products and nonimmunologic anaphylactoid reactions. Ann Allergy Asthma Immunol 95: 593–599. 16400901
47. Lovering AL, Safadi SS, Strynadka NC (2012) Structural perspective of peptidoglycan biosynthesis and assembly. Annu Rev Biochem 81: 451–478. doi: 10.1146/annurev-biochem-061809-112742 22663080
48. Denholm JT, McBryde ES (2010) The use of anti-tuberculosis therapy for latent TB infection. Infect Drug Resist 3: 63–72. 21694895
49. Hart GW, Slawson C, Ramirez-Correa G, Lagerlof O (2011) Cross talk between O-GlcNAcylation and phosphorylation: roles in signaling, transcription, and chronic disease. Annu Rev Biochem 80: 825–858. doi: 10.1146/annurev-biochem-060608-102511 21391816
50. Tanner ME (2005) The enzymes of sialic acid biosynthesis. Bioorg Chem 33: 216–228. 15888312
51. Itano N, Kimata K (2002) Mammalian hyaluronan synthases. IUBMB Life 54: 195–199. 12512858
52. Swoboda JG, Campbell J, Meredith TC, Walker S (2010) Wall teichoic acid function, biosynthesis, and inhibition. Chembiochem 11: 35–45. doi: 10.1002/cbic.200900557 19899094
53. Mikusova K, Mikus M, Besra GS, Hancock I, Brennan PJ (1996) Biosynthesis of the linkage region of the mycobacterial cell wall. J Biol Chem 271: 7820–7828. 8631826
54. Skovierova H, Larrouy-Maumus G, Pham H, Belanova M, Barilone N, et al. (2010) Biosynthetic origin of the galactosamine substituent of Arabinogalactan in Mycobacterium tuberculosis. J Biol Chem 285: 41348–41355. doi: 10.1074/jbc.M110.188110 21030587
55. Wang X, Quinn PJ (2010) Lipopolysaccharide: Biosynthetic pathway and structure modification. Prog Lipid Res 49: 97–107. doi: 10.1016/j.plipres.2009.06.002 19815028
56. Vimr ER, Kalivoda KA, Deszo EL, Steenbergen SM (2004) Diversity of microbial sialic acid metabolism. Microbiol Mol Biol Rev 68: 132–153. 15007099
57. Dell A, Galadari A, Sastre F, Hitchen P (2010) Similarities and differences in the glycosylation mechanisms in prokaryotes and eukaryotes. Int J Microbiol 2010: 148178. doi: 10.1155/2010/148178 21490701
58. Ujita M, Misra AK, McAuliffe J, Hindsgaul O, Fukuda M (2000) Poly-N-acetyllactosamine extension in N-glycans and core 2- and core 4-branched O-glycans is differentially controlled by i-extension enzyme and different members of the beta 1,4-galactosyltransferase gene family. J Biol Chem 275: 15868–15875. 10747980
59. Alderwick LJ, Molle V, Kremer L, Cozzone AJ, Dafforn TR, et al. (2006) Molecular structure of EmbR, a response element of Ser/Thr kinase signaling in Mycobacterium tuberculosis. Proc Natl Acad Sci U S A 103: 2558–2563. 16477027
60. Gill WP, Harik NS, Whiddon MR, Liao RP, Mittler JE, et al. (2009) A replication clock for Mycobacterium tuberculosis. Nat Med 15: 211–214. doi: 10.1038/nm.1915 19182798
61. Naseem S, Parrino SM, Buenten DM, Konopka JB (2012) Novel roles for GlcNAc in cell signaling. Commun Integr Biol 5: 156–159. doi: 10.4161/cib.19034 22808320
62. Handford M, Rodriguez-Furlan C, Orellana A (2006) Nucleotide-sugar transporters: structure, function and roles in vivo. Braz J Med Biol Res 39: 1149–1158. 16981043
63. Konopka JB (2012) N-acetylglucosamine (GlcNAc) functions in cell signaling. Scientifica (Cairo) 2012.
64. Klotzsche M, Ehrt S, Schnappinger D (2009) Improved tetracycline repressors for gene silencing in mycobacteria. Nucleic Acids Res 37: 1778–1788. doi: 10.1093/nar/gkp015 19174563
65. Jain P, Hsu T, Arai M, Biermann K, Thaler DS, et al. (2014) Specialized transduction designed for precise high-throughput unmarked deletions in Mycobacterium tuberculosis. MBio 5: e01245–01214. doi: 10.1128/mBio.01245-14 24895308
66. Bardarov S, Bardarov S Jr, Jr., Pavelka MS Jr, Jr., Sambandamurthy V, Larsen M, et al. (2002) Specialized transduction: an efficient method for generating marked and unmarked targeted gene disruptions in Mycobacterium tuberculosis, M. bovis BCG and M. smegmatis. Microbiology 148: 3007–3017. 12368434
67. Chawla Y, Upadhyay S, Khan S, Nagarajan SN, Forti F, et al. (2014) Protein kinase B (PknB) of Mycobacterium tuberculosis is essential for growth of the pathogen in vitro as well as for survival within the host. J Biol Chem 289: 13858–13875. doi: 10.1074/jbc.M114.563536 24706757
68. Gupta A, Sharma Y, Dash KN, Verma S, Natarajan VT, et al. (2014) Ultrastructural Investigations in an Autosomal Recessively Inherited Case of Dyschromatosis Universalis Hereditaria. Acta Derm Venereol.
69. Pandey AK, Raman S, Proff R, Joshi S, Kang CM, et al. (2009) Nitrile-inducible gene expression in mycobacteria. Tuberculosis (Edinb) 89: 12–16.
70. Ehrt S, Guo XV, Hickey CM, Ryou M, Monteleone M, et al. (2005) Controlling gene expression in mycobacteria with anhydrotetracycline and Tet repressor. Nucleic Acids Res 33: e21. 15687379
71. Puri RV, Reddy PV, Tyagi AK (2013) Secreted acid phosphatase (SapM) of Mycobacterium tuberculosis is indispensable for arresting phagosomal maturation and growth of the pathogen in guinea pig tissues. PLoS One 8: e70514. doi: 10.1371/journal.pone.0070514 23923000
72. Hu Y, Coates AR (2009) Acute and persistent Mycobacterium tuberculosis infections depend on the thiol peroxidase TpX. PLoS One 4: e5150. doi: 10.1371/journal.pone.0005150 19340292
73. Reddy PV, Puri RV, Chauhan P, Kar R, Rohilla A, et al. (2013) Disruption of mycobactin biosynthesis leads to attenuation of Mycobacterium tuberculosis for growth and virulence. J Infect Dis 208: 1255–1265. doi: 10.1093/infdis/jit250 23788726
74. Kirchmair J, Distinto S, Markt P, Schuster D, Spitzer GM, et al. (2009) How to optimize shape-based virtual screening: choosing the right query and including chemical information. J Chem Inf Model 49: 678–692. doi: 10.1021/ci8004226 19434901
75. Hawkins PC, Skillman AG, Nicholls A (2007) Comparison of shape-matching and docking as virtual screening tools. J Med Chem 50: 74–82. 17201411
76. György Kóczána GCk, Antal Csámpaic, Balogb Erika, Szilvia Bőszea Pál Sohárc, Hudecza Ferenc (2001) Synthesis and characterization of 4-ethoxymethylene-2-[1]-naphthyl-5(4H)-oxazolone and its fluorescent amino acid derivatives Tetrahedron 57: 4589–4598.
77. William L. Jorgensen DSM, and Julian Tirado-Rives (1996) Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids. Journal of the American Chemical Society 118: 11225–11236.
78. William L. Jorgensen JC, Jeffry D. Madura, Impey Roger W. and Klein Michael L. (1983) Comparison of simple potential functions for simulating liquid water. The Journal of Chemical Physics 79: 926–935.
79. Vincent Kräutler WFvGaHH(2001) A fast SHAKE algorithm to solve distance constraint equations for small molecules in molecular dynamics simulations. Journal of Computational Chemistry 22: 501–508.
80. Zhou Y, Xin Y, Sha S, Ma Y (2011) Kinetic properties of Mycobacterium tuberculosis bifunctional GlmU. Arch Microbiol 193: 751–757. doi: 10.1007/s00203-011-0715-8 21594607
Štítky
Hygiena a epidemiológia Infekčné lekárstvo LaboratóriumČlánok vyšiel v časopise
PLOS Pathogens
2015 Číslo 10
- Parazitičtí červi v terapii Crohnovy choroby a dalších zánětlivých autoimunitních onemocnění
- Očkování proti virové hemoragické horečce Ebola experimentální vakcínou rVSVDG-ZEBOV-GP
- Koronavirus hýbe světem: Víte jak se chránit a jak postupovat v případě podezření?
Najčítanejšie v tomto čísle
- Chronobiomics: The Biological Clock as a New Principle in Host–Microbial Interactions
- Interferon-γ: The Jekyll and Hyde of Malaria
- Crosslinking of a Peritrophic Matrix Protein Protects Gut Epithelia from Bacterial Exotoxins
- Modulation of the Surface Proteome through Multiple Ubiquitylation Pathways in African Trypanosomes