The Emerging Role for RNA Polymerase II in Regulating Virulence Gene Expression in Malaria Parasites
article has not abstract
Vyšlo v časopise:
The Emerging Role for RNA Polymerase II in Regulating Virulence Gene Expression in Malaria Parasites. PLoS Pathog 11(7): e32767. doi:10.1371/journal.ppat.1004926
Kategorie:
Pearls
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.ppat.1004926
Souhrn
article has not abstract
Zdroje
1. Guizetti J, Scherf A (2013) Silence, activate, poise and switch! Mechanisms of antigenic variation in Plasmodium falciparum. Cell Microbiol 15: 718–726. doi: 10.1111/cmi.12115 23351305
2. Smith JD, Chitnis CE, Craig AG, Roberts DJ, Hudson-Taylor DE, Peterson DS, Pinches R, Newbold CI, Miller LH (1995) Switches in expression of Plasmodium falciparum var genes correlate with changes in antigenic and cytoadherent phenotypes of infected erythrocytes. Cell 82: 101–110. 7606775
3. Su X, Heatwole VM, Wertheimer SP, Guinet F, Herrfeldt JV, Peterson DS, Ravetch JV, Wellems TE (1995) A large and diverse gene family (var) encodes 200–350 kD proteins implicated in the antigenic variation and cytoadherence of Plasmodium falciparum-infected erythrocytes. Cell 82: 89–100. 7606788
4. Baruch DI, Pasloske BL, Singh HB, Bi X, Ma XC, Feldman M, Taraschi TF, Howard RJ (1995) Cloning the P. falciparum gene encoding PfEMP1, a malarial variant antigen and adherence receptor on the surface of parasitized human erythrocytes. Cell 82: 77–87. 7541722
5. Lopez-Rubio JJ, Mancio-Silva L, Scherf A (2009) Genome-wide analysis of heterochromatin associates clonally variant gene regulation with perinuclear repressive centers in malaria parasites. Cell Host Microbe 5: 179–190. doi: 10.1016/j.chom.2008.12.012 19218088
6. Lopez-Rubio JJ, Gontijo AM, Nunes MC, Issar N, Hernandez RR, Scherf A (2007) 5' flanking region of var genes nucleate histone modification patterns linked to phenotypic inheritance of virulence traits in malaria parasites. Mol Microbiol 66: 1296–1305. 18028313
7. Chookajorn T, Dzikowski R, Frank M, Li F, Jiwani AZ, Hartl DL, Deitsch KW (2007) Epigenetic memory at malaria virulence genes. Proc Natl Acad Sci U S A 104: 899–902. 17209011
8. Jiang L, Mu J, Zhang Q, Ni T, Srinivasan P, Rayavara K, Yang W, Turner L, Lavstsen T, Theander TG, Peng W, Wei G, Jing Q, Wakabayashi Y, Bansal A, Luo Y, Ribeiro JM, Scherf A, Aravind L, Zhu J, Zhao K, Miller LH (2013) PfSETvs methylation of histone H3K36 represses virulence genes in Plasmodium falciparum. Nature 499: 223–227. doi: 10.1038/nature12361 23823717
9. Egloff S, Murphy S (2008) Cracking the RNA polymerase II CTD code. Trends Genet 24: 280–288. doi: 10.1016/j.tig.2008.03.008 18457900
10. Cho EJ (2007) RNA polymerase II carboxy-terminal domain with multiple connections. Exp Mol Med 39: 247–254. 17603278
11. Ng HH, Robert F, Young RA, Struhl K (2003) Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol Cell 11: 709–719. 12667453
12. Chapman RD, Heidemann M, Hintermair C, Eick D (2008) Molecular evolution of the RNA polymerase II CTD. Trends Genet 24: 289–296. doi: 10.1016/j.tig.2008.03.010 18472177
13. Dacks JB, Marinets A, Ford DW, Cavalier-Smith T, Logsdon JM Jr. (2002) Analyses of RNA Polymerase II genes from free-living protists: phylogeny, long branch attraction, and the eukaryotic big bang. Mol Biol Evol 19: 830–840. 12032239
14. Chapman AB, Agabian N (1994) Trypanosoma brucei RNA polymerase II is phosphorylated in the absence of carboxyl-terminal domain heptapeptide repeats. J Biol Chem 269: 4754–4760. 8106443
15. Kishore SP, Perkins SL, Templeton TJ, Deitsch KW (2009) An unusual recent expansion of the C-terminal domain of RNA polymerase II in primate malaria parasites features a motif otherwise found only in mammalian polymerases. J Mol Evol 68: 706–714. doi: 10.1007/s00239-009-9245-2 19449052
16. Ukaegbu UE, Kishore SP, Kwiatkowski DL, Pandarinath C, Dahan-Pasternak N, Dzikowski R, Deitsch KW (2014) Recruitment of PfSET2 by RNA polymerase II to variant antigen encoding loci contributes to antigenic variation in P. falciparum. PLoS Pathog 10: e1003854. doi: 10.1371/journal.ppat.1003854 24391504
17. Sun XJ, Wei J, Wu XY, Hu M, Wang L, Wang HH, Zhang QH, Chen SJ, Huang QH, Chen Z (2005) Identification and characterization of a novel human histone H3 lysine 36-specific methyltransferase. J Biol Chem 280: 35261–35271. 16118227
18. Kizer KO, Phatnani HP, Shibata Y, Hall H, Greenleaf AL, Strahl BD (2005) A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation. Mol Cell Biol 25: 3305–3316. 15798214
19. Li B, Howe L, Anderson S, Yates JR III, Workman JL (2003) The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II. J Biol Chem 278: 8897–8903. 12511561
20. Recker M, Buckee CO, Serazin A, Kyes S, Pinches R, Christodoulou Z, Springer AL, Gupta S, Newbold CI (2011) Antigenic variation in Plasmodium falciparum malaria involves a highly structured switching pattern. PLoS Pathog 7: e1001306. doi: 10.1371/journal.ppat.1001306 21408201
21. Horrocks P, Pinches R, Christodoulou Z, Kyes SA, Newbold CI (2004) Variable var transition rates underlie antigenic variation in malaria. Proc Natl Acad Sci U S A 101: 11129–11134. 15256597
22. Noble R, Christodoulou Z, Kyes S, Pinches R, Newbold CI, Recker M (2013) The antigenic switching network of Plasmodium falciparum and its implications for the immuno-epidemiology of malaria. Elife (Cambridge) 2: e01074.
23. Enderes C, Kombila D, Dal Bianco M, Dzikowski R, Kremsner P, Frank M (2011) Var Gene promoter activation in clonal Plasmodium falciparum isolates follows a hierarchy and suggests a conserved switching program that is independent of genetic background. J Infect Dis 204: 1620–1631. doi: 10.1093/infdis/jir594 21926380
24. Frank M, Dzikowski R, Amulic B, Deitsch K (2007) Variable switching rates of malaria virulence genes are associated with chromosomal position. Mol Microbiol 64: 1486–1498. 17555435
25. Noble R, Recker M (2012) A statistically rigorous method for determining antigenic switching networks. PLoS ONE 7: e39335. doi: 10.1371/journal.pone.0039335 22761765
26. Kyes S, Christodoulou Z, Pinches R, Kriek N, Horrocks P, Newbold C (2007) Plasmodium falciparum var gene expression is developmentally controlled at the level of RNA polymerase II-mediated transcription initiation. Mol Microbiol 63: 1237–1247. 17257309
27. Deitsch KW, Calderwood MS, Wellems TE (2001) Malaria. Cooperative silencing elements in var genes. Nature 412: 875–876.
28. Dzikowski R, Li F, Amulic B, Eisberg A, Frank M, Patel S, Wellems TE, Deitsch KW (2007) Mechanisms underlying mutually exclusive expression of virulence genes by malaria parasites. EMBO Rep 8: 959–965. 17762879
29. Roberts TC, Morris KV, Weinberg MS (2014) Perspectives on the mechanism of transcriptional regulation by long non-coding RNAs. Epigenetics 9: 13–20. doi: 10.4161/epi.26700 24149621
30. Vembar SS, Scherf A, Siegel TN (2014) Noncoding RNAs as emerging regulators of Plasmodium falciparum virulence gene expression. Curr Opin Microbiol 20: 153–161. doi: 10.1016/j.mib.2014.06.013 25022240
31. Wei C, Xiao T, Zhang P, Wang Z, Chen X, Zhang L, Yao M, Chen R, Wang H (2014) Deep profiling of the novel intermediate-size noncoding RNAs in intraerythrocytic Plasmodium falciparum. PLoS ONE 9: e92946. 1 doi: 10.1371/journal.pone.0092946 24713982
32. Raabe CA, Sanchez CP, Randau G, Robeck T, Skryabin BV, Chinni SV, Kube M, Reinhardt R, Ng GH, Manickam R, Kuryshev VY, Lanzer M, Brosius J, Tang TH, Rozhdestvensky TS (2010) A global view of the nonprotein-coding transcriptome in Plasmodium falciparum. Nucleic Acids Res 38: 608–617. doi: 10.1093/nar/gkp895 19864253
33. Lopez-Barragan MJ, Lemieux J, Quinones M, Williamson KC, Molina-Cruz A, Cui K, Barillas-Mury C, Zhao K, Su XZ (2011) Directional gene expression and antisense transcripts in sexual and asexual stages of Plasmodium falciparum. BMC Genomics 12: 587. doi: 10.1186/1471-2164-12-587 22129310
34. Broadbent KM, Park D, Wolf AR, Van Tyne D, Sims JS, Ribacke U, Volkman S, Duraisingh M, Wirth D, Sabeti PC, Rinn JL (2011) A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs. Genome Biol 12: R56. doi: 10.1186/gb-2011-12-6-r56 21689454
35. Sierra-Miranda M, Delgadillo DM, Mancio-Silva L, Vargas M, Villegas-Sepulveda N, Martinez-Calvillo S, Scherf A, Hernandez-Rivas R (2012) Two long non-coding RNAs generated from subtelomeric regions accumulate in a novel perinuclear compartment in Plasmodium falciparum. Mol Biochem Parasitol 185: 36–47. doi: 10.1016/j.molbiopara.2012.06.005 22721695
36. Cui L, Fan Q, Cui L, Miao J (2008) Histone lysine methyltransferases and demethylases in Plasmodium falciparum. Int J Parasitol 38: 1083–1097. doi: 10.1016/j.ijpara.2008.01.002 18299133
37. Volz JC, Bartfai R, Petter M, Langer C, Josling GA, Tsuboi T, Schwach F, Baum J, Rayner JC, Stunnenberg HG, Duffy MF, Cowman AF (2012) PfSET10, a Plasmodium falciparum methyltransferase, maintains the active var gene in a poised state during parasite division. Cell Host Microbe 11: 7–18. doi: 10.1016/j.chom.2011.11.011 22264509
Štítky
Hygiena a epidemiológia Infekčné lekárstvo LaboratóriumČlánok vyšiel v časopise
PLOS Pathogens
2015 Číslo 7
- Parazitičtí červi v terapii Crohnovy choroby a dalších zánětlivých autoimunitních onemocnění
- Očkování proti virové hemoragické horečce Ebola experimentální vakcínou rVSVDG-ZEBOV-GP
- Koronavirus hýbe světem: Víte jak se chránit a jak postupovat v případě podezření?
Najčítanejšie v tomto čísle
- Characterization of a Prefusion-Specific Antibody That Recognizes a Quaternary, Cleavage-Dependent Epitope on the RSV Fusion Glycoprotein
- N-acetylglucosamine Regulates Virulence Properties in Microbial Pathogens
- Activation of TLR2 and TLR6 by Dengue NS1 Protein and Its Implications in the Immunopathogenesis of Dengue Virus Infection
- RNA Virus Reassortment: An Evolutionary Mechanism for Host Jumps and Immune Evasion