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The Mutations in the ATP-Binding Groove of the Rad3/XPD Helicase Lead to -Cockayne Syndrome-Like Phenotypes
TFIIH is a protein complex that functions in the repair of bulky adducts distorting the DNA via the pathway of Nucleotide Excision Repair, and in transcription initiation and transactivation, the latter being a specific transcription activation process occurring in response to hormones. We have taken advantage of the powerful genetics and molecular biology of the model organism Saccharomyces cerevisiae to characterize the impact on cell fitness of a particular kind of mutations of one of the two helicases of the TFIIH complex, Rad3, called rem mutations for their increased levels of recombination and mutation. We have realized that these mutations affect a particular site of the protein, its ATP-binding groove, and modify the dynamics of TFIIH, leading to unfinished repair reactions and DNA break accumulation. Finally, we recreated these mutations in the human homolog XPD protein and found that their phenotypes recapitulated those of human mutations leading to a combination of the two hereditary diseases Xeroderma pigmentosum and Cockayne syndrome (XP-D/CS), whose molecular basis remains elusive. As these mutations also affect the ATP-binding groove of XPD, this study permits to propose a model to explain the molecular basis of XP-D/CS.
Vyšlo v časopise: The Mutations in the ATP-Binding Groove of the Rad3/XPD Helicase Lead to -Cockayne Syndrome-Like Phenotypes. PLoS Genet 10(12): e32767. doi:10.1371/journal.pgen.1004859
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1004859Souhrn
TFIIH is a protein complex that functions in the repair of bulky adducts distorting the DNA via the pathway of Nucleotide Excision Repair, and in transcription initiation and transactivation, the latter being a specific transcription activation process occurring in response to hormones. We have taken advantage of the powerful genetics and molecular biology of the model organism Saccharomyces cerevisiae to characterize the impact on cell fitness of a particular kind of mutations of one of the two helicases of the TFIIH complex, Rad3, called rem mutations for their increased levels of recombination and mutation. We have realized that these mutations affect a particular site of the protein, its ATP-binding groove, and modify the dynamics of TFIIH, leading to unfinished repair reactions and DNA break accumulation. Finally, we recreated these mutations in the human homolog XPD protein and found that their phenotypes recapitulated those of human mutations leading to a combination of the two hereditary diseases Xeroderma pigmentosum and Cockayne syndrome (XP-D/CS), whose molecular basis remains elusive. As these mutations also affect the ATP-binding groove of XPD, this study permits to propose a model to explain the molecular basis of XP-D/CS.
Zdroje
1. AguileraA, Garcia-MuseT (2013) Causes of genome instability. Annu Rev Genet 47 : 1–32.
2. FeaverWJ, SvejstrupJQ, HenryNL, KornbergRD (1994) Relationship of CDK-activating kinase and RNA polymerase II CTD kinase TFIIH/TFIIK. Cell 79 : 1103–1109.
3. SchroederSC, SchwerB, ShumanS, BentleyD (2000) Dynamic association of capping enzymes with transcribing RNA polymerase II. Genes Dev 14 : 2435–2440.
4. MocquetV, LaineJP, RiedlT, YajinZ, LeeMY, et al. (2008) Sequential recruitment of the repair factors during NER: the role of XPG in initiating the resynthesis step. EMBO J 27 : 155–167.
5. TirodeF, BussoD, CoinF, EglyJM (1999) Reconstitution of the transcription factor TFIIH: assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7. Mol Cell 3 : 87–95.
6. NouspikelT (2009) DNA repair in mammalian cells : Nucleotide excision repair: variations on versatility. Cell Mol Life Sci 66 : 994–1009.
7. VenemaJ, MullendersLH, NatarajanAT, van ZeelandAA, MayneLV (1990) The genetic defect in Cockayne syndrome is associated with a defect in repair of UV-induced DNA damage in transcriptionally active DNA. Proc Natl Acad Sci U S A 87 : 4707–4711.
8. FousteriM, VermeulenW, van ZeelandAA, MullendersLH (2006) Cockayne syndrome A and B proteins differentially regulate recruitment of chromatin remodeling and repair factors to stalled RNA polymerase II in vivo. Mol Cell 23 : 471–482.
9. BerneburgM, LoweJE, NardoT, AraujoS, FousteriMI, et al. (2000) UV damage causes uncontrolled DNA breakage in cells from patients with combined features of XP-D and Cockayne syndrome. EMBO J 19 : 1157–1166.
10. AndressooJO, MitchellJR, de WitJ, HoogstratenD, VolkerM, et al. (2006) An Xpd mouse model for the combined xeroderma pigmentosum/Cockayne syndrome exhibiting both cancer predisposition and segmental progeria. Cancer Cell 10 : 121–132.
11. MonteloneBA, MaloneRE (1994) Analysis of the rad3-101 and rad3-102 mutations of Saccharomyces cerevisiae: implications for structure/function of Rad3 protein. Yeast 10 : 13–27.
12. GolinJE, EspositoMS (1977) Evidence for joint genic control of spontaneous mutation and genetic recombination during mitosis in Saccharomyces. Mol Gen Genet 150 : 127–135.
13. MaloneRE, HoekstraMF (1984) Relationships between a hyper-rec mutation (REM1) and other recombination and repair genes in yeast. Genetics 107 : 33–48.
14. MonteloneBA, HoekstraMF, MaloneRE (1988) Spontaneous mitotic recombination in yeast: the hyper-recombinational rem1 mutations are alleles of the RAD3 gene. Genetics 119 : 289–301.
15. Moriel-CarreteroM, AguileraA (2010) A postincision-deficient TFIIH causes replication fork breakage and uncovers alternative Rad51 - or Pol32-mediated restart mechanisms. Mol Cell 37 : 690–701.
16. WinklerGS, SugasawaK, EkerAP, de LaatWL, HoeijmakersJH (2001) Novel functional interactions between nucleotide excision DNA repair proteins influencing the enzymatic activities of TFIIH, XPG, and ERCC1-XPF. Biochemistry 40 : 160–165.
17. FanL, FussJO, ChengQJ, ArvaiAS, HammelM, et al. (2008) XPD helicase structures and activities: insights into the cancer and aging phenotypes from XPD mutations. Cell 133 : 789–800.
18. TheronT, FousteriMI, VolkerM, HarriesLW, BottaE, et al. (2005) Transcription-associated breaks in xeroderma pigmentosum group D cells from patients with combined features of xeroderma pigmentosum and Cockayne syndrome. Mol Cell Biol 25 : 8368–8378.
19. NaumovskiL, ChuG, BergP, FriedbergEC (1985) RAD3 gene of Saccharomyces cerevisiae: nucleotide sequence of wild-type and mutant alleles, transcript mapping, and aspects of gene regulation. Mol Cell Biol 5 : 17–26.
20. TesteMA, DuquenneM, FrancoisJM, ParrouJL (2009) Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae. BMC Mol Biol 10 : 99.
21. MoneMJ, VolkerM, NikaidoO, MullendersLH, van ZeelandAA, et al. (2001) Local UV-induced DNA damage in cell nuclei results in local transcription inhibition. EMBO Rep 2 : 1013–1017.
22. HoogstratenD, NiggAL, HeathH, MullendersLH, van DrielR, et al. (2002) Rapid switching of TFIIH between RNA polymerase I and II transcription and DNA repair in vivo. Mol Cell 10 : 1163–1174.
23. GiannattasioM, LazzaroF, LongheseMP, PlevaniP, Muzi-FalconiM (2004) Physical and functional interactions between nucleotide excision repair and DNA damage checkpoint. EMBO J 23 : 429–438.
24. MariniF, NardoT, GiannattasioM, MinuzzoM, StefaniniM, et al. (2006) DNA nucleotide excision repair-dependent signaling to checkpoint activation. Proc Natl Acad Sci U S A 103 : 17325–17330.
25. SchultzLB, ChehabNH, MalikzayA, HalazonetisTD (2000) p53 binding protein 1 (53BP1) is an early participant in the cellular response to DNA double-strand breaks. J Cell Biol 151 : 1381–1390.
26. TaylorEM, BroughtonBC, BottaE, StefaniniM, SarasinA, et al. (1997) Xeroderma pigmentosum and trichothiodystrophy are associated with different mutations in the XPD (ERCC2) repair/transcription gene. Proc Natl Acad Sci U S A 94 : 8658–8663.
27. de FeraudyS, RevetI, BezrookoveV, FeeneyL, CleaverJE (2010) A minority of foci or pan-nuclear apoptotic staining of gammaH2AX in the S phase after UV damage contain DNA double-strand breaks. Proc Natl Acad Sci U S A 107 : 6870–6875.
28. Moriel-CarreteroM, AguileraA (2010) Replication fork breakage and re-start: New insights into Rad3/XPD-associated deficiencies. Cell Cycle 9 : 2958–2962.
29. WolskiSC, KuperJ, KiskerC (2010) The XPD helicase: XPanDing archaeal XPD structures to get a grip on human DNA repair. Biol Chem 391 : 761–765.
30. SongJM, MonteloneBA, SiedeW, FriedbergEC (1990) Effects of multiple yeast rad3 mutant alleles on UV sensitivity, mutability, and mitotic recombination. J Bacteriol 172 : 6620–6630.
31. GodonC, MourguesS, NonnekensJ, MourcetA, CoinF, et al. (2012) Generation of DNA single-strand displacement by compromised nucleotide excision repair. EMBO J 31 : 3550–3563.
32. Velez-CruzR, ZadorinAS, CoinF, EglyJM (2013) Sirt1 suppresses RNA synthesis after UV irradiation in combined xeroderma pigmentosum group D/Cockayne syndrome (XP-D/CS) cells. Proc Natl Acad Sci U S A 110: E212–220.
33. SheffMA, ThornKS (2004) Optimized cassettes for fluorescent protein tagging in Saccharomyces cerevisiae. Yeast 21 : 661–670.
34. LisbyM, MortensenUH, RothsteinR (2003) Colocalization of multiple DNA double-strand breaks at a single Rad52 repair centre. Nat Cell Biol 5 : 572–577.
35. HechtA, GrunsteinM (1999) Mapping DNA interaction sites of chromosomal proteins using immunoprecipitation and polymerase chain reaction. Methods Enzymol 304 : 399–414.
36. YuY, TengY, LiuH, ReedSH, WatersR (2005) UV irradiation stimulates histone acetylation and chromatin remodeling at a repressed yeast locus. Proc Natl Acad Sci U S A 102 : 8650–8655.
37. GaillardH, WellingerRE, AguileraA (2009) Methods to study transcription-coupled repair in chromatin. Methods Mol Biol 523 : 141–159.
38. SantocanaleC, DiffleyJF (1998) A Mec1 - and Rad53-dependent checkpoint controls late-firing origins of DNA replication. Nature 395 : 615–618.
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