Mutations of Human , Encoding the Mitochondrial Asparaginyl-tRNA Synthetase, Cause Nonsyndromic Deafness and Leigh Syndrome
Mitochondrial respiratory chain (MRC) disease represents a large and heterogeneous group of energy deficiency disorders. Here we report three mutations in NARS2, a mitochondrial asparaginyl-tRNA synthetase, associated with non-syndromic hearing loss (NSHL) and Leigh syndrome in two independent families. Located in the predicted catalytic domain of the protein, missense mutation p.(Val213Phe) results in NSHL (DFNB94) while compound heterozygous mutation (p.Tyr323*; p.Asn381Ser) is leading to Leigh syndrome with auditory neuropathy. In vivo analysis deemed p.Tyr323* mutant protein to be unstable. Co-immunoprecipitation assays show that p.Asn381Ser mutant disrupts the dimerization ability of NARS2. Leigh syndrome patient fibroblasts exhibit a decreased steady-state level of mt-tRNAAsn. In addition, in these cells, the mitochondrial respiratory chain is deficient, including significantly decreased oxygen consumption rates and electron transport chain activities. These functions can be partially restored with over-expression of wild-type NARS2 but not with p.Val213Phe mutant protein. Our study provides new insights into the genes that are necessary for the function of brain and inner ear sensory cells in humans.
Vyšlo v časopise:
Mutations of Human , Encoding the Mitochondrial Asparaginyl-tRNA Synthetase, Cause Nonsyndromic Deafness and Leigh Syndrome. PLoS Genet 11(3): e32767. doi:10.1371/journal.pgen.1005097
Kategorie:
Research Article
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.pgen.1005097
Souhrn
Mitochondrial respiratory chain (MRC) disease represents a large and heterogeneous group of energy deficiency disorders. Here we report three mutations in NARS2, a mitochondrial asparaginyl-tRNA synthetase, associated with non-syndromic hearing loss (NSHL) and Leigh syndrome in two independent families. Located in the predicted catalytic domain of the protein, missense mutation p.(Val213Phe) results in NSHL (DFNB94) while compound heterozygous mutation (p.Tyr323*; p.Asn381Ser) is leading to Leigh syndrome with auditory neuropathy. In vivo analysis deemed p.Tyr323* mutant protein to be unstable. Co-immunoprecipitation assays show that p.Asn381Ser mutant disrupts the dimerization ability of NARS2. Leigh syndrome patient fibroblasts exhibit a decreased steady-state level of mt-tRNAAsn. In addition, in these cells, the mitochondrial respiratory chain is deficient, including significantly decreased oxygen consumption rates and electron transport chain activities. These functions can be partially restored with over-expression of wild-type NARS2 but not with p.Val213Phe mutant protein. Our study provides new insights into the genes that are necessary for the function of brain and inner ear sensory cells in humans.
Zdroje
1. McCormick E, Place E, Falk MJ (2013) Molecular genetic testing for mitochondrial disease: from one generation to the next. Neurotherapeutics 10: 251–261. doi: 10.1007/s13311-012-0174-1 23269497
2. Lightowlers RN, Rozanska A, Chrzanowska-Lightowlers ZM (2014) Mitochondrial protein synthesis: figuring the fundamentals, complexities and complications, of mammalian mitochondrial translation. FEBS Lett 588: 2496–2503. doi: 10.1016/j.febslet.2014.05.054 24911204
3. Schwenzer H, Scheper GC, Zorn N, Moulinier L, Gaudry A, et al. (2014) Released selective pressure on a structural domain gives new insights on the functional relaxation of mitochondrial aspartyl-tRNA synthetase. Biochimie 100: 18–26. doi: 10.1016/j.biochi.2013.09.027 24120687
4. Michael Ibba CFaSC (2005) The Aminoacyl-tRNA Synthetases. Georgetown, TX.
5. Scheper GC, van der Klok T, van Andel RJ, van Berkel CG, Sissler M, et al. (2007) Mitochondrial aspartyl-tRNA synthetase deficiency causes leukoencephalopathy with brain stem and spinal cord involvement and lactate elevation. Nat Genet 39: 534–539. 17384640
6. Diodato D, Ghezzi D, Tiranti V (2014) The Mitochondrial Aminoacyl tRNA Synthetases: Genes and Syndromes. Int J Cell Biol 2014: 787956. doi: 10.1155/2014/787956 24639874
7. Schwartzentruber J, Buhas D, Majewski J, Sasarman F, Papillon-Cavanagh S, et al. (2014) Mutation in The Nuclear-Encoded Mitochondrial Isoleucyl-tRNA Synthetase IARS2 in Patients with Cataracts, Growth Hormone Deficiency with Short Stature, Partial Sensorineural Deafness, and Peripheral Neuropathy or with Leigh Syndrome. Hum Mutat 35: 1285–1289. doi: 10.1002/humu.22629 25130867
8. Vanlander AV, Menten B, Smet J, De Meirleir L, Sante T, et al. (2014) Two Siblings with Homozygous Pathogenic Splice Site Variant in Mitochondrial Asparaginyl-tRNA Synthetase (NARS2). Hum Mutat 36: 222–231.
9. Yao P, Fox PL (2013) Aminoacyl-tRNA synthetases in medicine and disease. EMBO Mol Med 5: 332–343. doi: 10.1002/emmm.201100626 23427196
10. Guo M, Schimmel P (2013) Essential nontranslational functions of tRNA synthetases. Nat Chem Biol 9: 145–153. doi: 10.1038/nchembio.1158 23416400
11. Tyynismaa H, Schon EA (2014) Mixing and matching mitochondrial aminoacyl synthetases and their tRNAs: a new way to treat respiratory chain disorders? EMBO Mol Med 6: 155–157. doi: 10.1002/emmm.201303586 24473201
12. McLaughlin HM, Sakaguchi R, Giblin W, Program NCS, Wilson TE, et al. (2012) A recurrent loss-of-function alanyl-tRNA synthetase (AARS) mutation in patients with Charcot-Marie-Tooth disease type 2N (CMT2N). Hum Mutat 33: 244–253. doi: 10.1002/humu.21635 22009580
13. Cassandrini D, Cilio MR, Bianchi M, Doimo M, Balestri M, et al. (2013) Pontocerebellar hypoplasia type 6 caused by mutations in RARS2: definition of the clinical spectrum and molecular findings in five patients. J Inherit Metab Dis 36: 43–53. doi: 10.1007/s10545-012-9487-9 22569581
14. Santos-Cortez RL, Lee K, Azeem Z, Antonellis PJ, Pollock LM, et al. (2013) Mutations in KARS, encoding lysyl-tRNA synthetase, cause autosomal-recessive nonsyndromic hearing impairment DFNB89. Am J Hum Genet 93: 132–140. doi: 10.1016/j.ajhg.2013.05.018 23768514
15. McMillan HJ, Humphreys P, Smith A, Schwartzentruber J, Chakraborty P, et al. (2014) Congenital Visual Impairment and Progressive Microcephaly Due to Lysyl-Transfer Ribonucleic Acid (RNA) Synthetase (KARS) Mutations: The Expanding Phenotype of Aminoacyl-Transfer RNA Synthetase Mutations in Human Disease. J Child Neurol. E-pub ahead of print. pii: 0883073814553272.
16. Elo JM, Yadavalli SS, Euro L, Isohanni P, Gotz A, et al. (2012) Mitochondrial phenylalanyl-tRNA synthetase mutations underlie fatal infantile Alpers encephalopathy. Hum Mol Genet 21: 4521–4529. 22833457
17. Almalki A, Alston CL, Parker A, Simonic I, Mehta SG, et al. (2014) Mutation of the human mitochondrial phenylalanine-tRNA synthetase causes infantile-onset epilepsy and cytochrome c oxidase deficiency. Biochim Biophys Acta 1842: 56–64. doi: 10.1016/j.bbadis.2013.10.008 24161539
18. Steenweg ME, Ghezzi D, Haack T, Abbink TE, Martinelli D, et al. (2012) Leukoencephalopathy with thalamus and brainstem involvement and high lactate 'LTBL' caused by EARS2 mutations. Brain 135: 1387–1394. doi: 10.1093/brain/aws070 22492562
19. Finsterer J (2008) Leigh and Leigh-like syndrome in children and adults. Pediatr Neurol 39: 223–235. doi: 10.1016/j.pediatrneurol.2008.07.013 18805359
20. Baertling F, Rodenburg RJ, Schaper J, Smeitink JA, Koopman WJ, et al. (2014) A guide to diagnosis and treatment of Leigh syndrome. J Neurol Neurosurg Psychiatry 85: 257–265. doi: 10.1136/jnnp-2012-304426 23772060
21. Sofou K, De Coo IF, Isohanni P, Ostergaard E, Naess K, et al. (2014) A multicenter study on Leigh syndrome: disease course and predictors of survival. Orphanet J Rare Dis 9: 52. doi: 10.1186/1750-1172-9-52 24731534
22. Weil D, Kussel P, Blanchard S, Levy G, Levi-Acobas F, et al. (1997) The autosomal recessive isolated deafness, DFNB2, and the Usher 1B syndrome are allelic defects of the myosin-VIIA gene. Nat Genet 16: 191–193. 9171833
23. Riazuddin S, Nazli S, Ahmed ZM, Yang Y, Zulfiqar F, et al. (2008) Mutation spectrum of MYO7A and evaluation of a novel nonsyndromic deafness DFNB2 allele with residual function. Hum Mutat 29: 502–511. doi: 10.1002/humu.20677 18181211
24. Ben-Salem S, Rehm HL, Willems PJ, Tamimi ZA, Ayadi H, et al. (2014) Analysis of two Arab families reveals additional support for a DFNB2 nonsyndromic phenotype of MYO7A. Mol Biol Rep 41: 193–200. doi: 10.1007/s11033-013-2851-5 24194196
25. Shahzad M, Sivakumaran TA, Qaiser TA, Schultz JM, Hussain Z, et al. (2013) Genetic analysis through OtoSeq of Pakistani families segregating prelingual hearing loss. Otolaryngol Head Neck Surg 149: 478–487. doi: 10.1177/0194599813493075 23770805
26. Morsli H, Choo D, Ryan A, Johnson R, Wu DK (1998) Development of the mouse inner ear and origin of its sensory organs. J Neurosci 18: 3327–3335. 9547240
27. Anderson DW, Probst FJ, Belyantseva IA, Fridell RA, Beyer L, et al. (2000) The motor and tail regions of myosin XV are critical for normal structure and function of auditory and vestibular hair cells. Hum Mol Genet 9: 1729–1738. 10915760
28. Landrieu I, Vandenbol M, Hartlein M, Portetelle D (1997) Mitochondrial asparaginyl-tRNA synthetase is encoded by the yeast nuclear gene YCR24c. Eur J Biochem 243: 268–273. 9030748
29. Eriani G, Delarue M, Poch O, Gangloff J, Moras D (1990) Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs. Nature 347: 203–206. 2203971
30. Cusack S, Berthet-Colominas C, Hartlein M, Nassar N, Leberman R (1990) A second class of synthetase structure revealed by X-ray analysis of Escherichia coli seryl-tRNA synthetase at 2.5 A. Nature 347: 249–255. 2205803
31. Zdobnov EM, Apweiler R (2001) InterProScan—an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17: 847–848. 11590104
32. Arnold K, Bordoli L, Kopp J, Schwede T (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22: 195–201. 16301204
33. Chang X, Wang K (2012) wANNOVAR: annotating genetic variants for personal genomes via the web. J Med Genet 49: 433–436. doi: 10.1136/jmedgenet-2012-100918 22717648
34. Choi Y, Sims GE, Murphy S, Miller JR, Chan AP (2012) Predicting the functional effect of amino acid substitutions and indels. PLoS One 7: e46688. doi: 10.1371/journal.pone.0046688 23056405
35. Iwasaki W, Sekine S, Kuroishi C, Kuramitsu S, Shirouzu M, et al. (2006) Structural basis of the water-assisted asparagine recognition by asparaginyl-tRNA synthetase. J Mol Biol 360: 329–342. 16753178
36. Mudge SJ, Williams JH, Eyre HJ, Sutherland GR, Cowan PJ, et al. (1998) Complex organisation of the 5'-end of the human glycine tRNA synthetase gene. Gene 209: 45–50. 9524218
37. Turner RJ, Lovato M, Schimmel P (2000) One of two genes encoding glycyl-tRNA synthetase in Saccharomyces cerevisiae provides mitochondrial and cytoplasmic functions. J Biol Chem 275: 27681–27688. 10874035
38. Chihara T, Luginbuhl D, Luo L (2007) Cytoplasmic and mitochondrial protein translation in axonal and dendritic terminal arborization. Nat Neurosci 10: 828–837. 17529987
39. Pierce SB, Gersak K, Michaelson-Cohen R, Walsh T, Lee MK, et al. (2013) Mutations in LARS2, encoding mitochondrial leucyl-tRNA synthetase, lead to premature ovarian failure and hearing loss in Perrault syndrome. Am J Hum Genet 92: 614–620. doi: 10.1016/j.ajhg.2013.03.007 23541342
40. Pierce SB, Chisholm KM, Lynch ED, Lee MK, Walsh T, et al. (2011) Mutations in mitochondrial histidyl tRNA synthetase HARS2 cause ovarian dysgenesis and sensorineural hearing loss of Perrault syndrome. Proc Natl Acad Sci U S A 108: 6543–6548. doi: 10.1073/pnas.1103471108 21464306
41. Nisar N, Sohoo NA, Sikandar R (2012) Age and symptoms at natural menopause: a cross-sectional survey of rural women in Sindh Pakistan. J Ayub Med Coll Abbottabad 24: 90–94. 24669621
42. Baker KE, Parker R (2004) Nonsense-mediated mRNA decay: terminating erroneous gene expression. Curr Opin Cell Biol 16: 293–299. 15145354
43. Belostotsky R, Ben-Shalom E, Rinat C, Becker-Cohen R, Feinstein S, et al. (2011) Mutations in the mitochondrial seryl-tRNA synthetase cause hyperuricemia, pulmonary hypertension, renal failure in infancy and alkalosis, HUPRA syndrome. Am J Hum Genet 88: 193–200. doi: 10.1016/j.ajhg.2010.12.010 21255763
44. Horvath R, Kemp JP, Tuppen HA, Hudson G, Oldfors A, et al. (2009) Molecular basis of infantile reversible cytochrome c oxidase deficiency myopathy. Brain 132: 3165–3174. doi: 10.1093/brain/awp221 19720722
45. Boczonadi V, Horvath R (2014) Mitochondria: impaired mitochondrial translation in human disease. Int J Biochem Cell Biol 48: 77–84. doi: 10.1016/j.biocel.2013.12.011 24412566
46. Isohanni P, Linnankivi T, Buzkova J, Lonnqvist T, Pihko H, et al. (2010) DARS2 mutations in mitochondrial leucoencephalopathy and multiple sclerosis. J Med Genet 47: 66–70. doi: 10.1136/jmg.2009.068221 19592391
47. Li R, Guan MX (2010) Human mitochondrial leucyl-tRNA synthetase corrects mitochondrial dysfunctions due to the tRNALeu(UUR) A3243G mutation, associated with mitochondrial encephalomyopathy, lactic acidosis, and stroke-like symptoms and diabetes. Mol Cell Biol 30: 2147–2154. doi: 10.1128/MCB.01614-09 20194621
48. Hornig-Do HT, Montanari A, Rozanska A, Tuppen HA, Almalki AA, et al. (2014) Human mitochondrial leucyl tRNA synthetase can suppress non cognate pathogenic mt-tRNA mutations. EMBO Mol Med 6: 183–193. doi: 10.1002/emmm.201303202 24413189
49. Lombes A, Aure K, Bellanne-Chantelot C, Gilleron M, Jardel C (2014) Unsolved issues related to human mitochondrial diseases. Biochimie 100: 171–176. doi: 10.1016/j.biochi.2013.08.012 23973280
50. Schwenzer H, Zoll J, Florentz C, Sissler M (2014) Pathogenic implications of human mitochondrial aminoacyl-tRNA synthetases. Top Curr Chem 344: 247–292. doi: 10.1007/128_2013_457 23824528
51. Konovalova S, Tyynismaa H (2013) Mitochondrial aminoacyl-tRNA synthetases in human disease. Mol Genet Metab 108: 206–211. doi: 10.1016/j.ymgme.2013.01.010 23433712
52. Antonicka H, Sasarman F, Kennaway NG, Shoubridge EA (2006) The molecular basis for tissue specificity of the oxidative phosphorylation deficiencies in patients with mutations in the mitochondrial translation factor EFG1. Hum Mol Genet 15: 1835–1846. 16632485
53. Zhang Z, Falk MJ (2014) Integrated transcriptome analysis across mitochondrial disease etiologies and tissues improves understanding of common cellular adaptations to respiratory chain dysfunction. Int J Biochem Cell Biol 50: 106–111. doi: 10.1016/j.biocel.2014.02.012 24569120
54. Tischner C, Hofer A, Wulff V, Stepek J, Dumitru I, et al. (2014) MTO1 mediates tissue specificity of OXPHOS defects via tRNA modification and translation optimization, which can be bypassed by dietary intervention. Hum Mol Genet. E-pub ahead of print. pii: ddu743.
55. Edvardson S, Shaag A, Kolesnikova O, Gomori JM, Tarassov I, et al. (2007) Deleterious mutation in the mitochondrial arginyl-transfer RNA synthetase gene is associated with pontocerebellar hypoplasia. Am J Hum Genet 81: 857–862. 17847012
56. Huang S, Ratliff KS, Matouschek A (2002) Protein unfolding by the mitochondrial membrane potential. Nat Struct Biol 9: 301–307. 11887183
57. Wilcox AJ, Choy J, Bustamante C, Matouschek A (2005) Effect of protein structure on mitochondrial import. Proc Natl Acad Sci U S A 102: 15435–15440. 16230614
58. Banerjee R, Reynolds NM, Yadavalli SS, Rice C, Roy H, et al. (2011) Mitochondrial aminoacyl-tRNA synthetase single-nucleotide polymorphisms that lead to defects in refolding but not aminoacylation. J Mol Biol 410: 280–293. doi: 10.1016/j.jmb.2011.05.011 21601574
59. Wang K, Li M, Hakonarson H (2010) ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 38: e164. doi: 10.1093/nar/gkq603 20601685
60. DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 43: 491–498. doi: 10.1038/ng.806 21478889
61. Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754–1760. doi: 10.1093/bioinformatics/btp324 19451168
62. Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132: 365–386. 10547847
63. Potluri P, Davila A, Ruiz-Pesini E, Mishmar D, O'Hearn S, et al. (2009) A novel NDUFA1 mutation leads to a progressive mitochondrial complex I-specific neurodegenerative disease. Mol Genet Metab 96: 189–195. doi: 10.1016/j.ymgme.2008.12.004 19185523
64. Li L, Li B, Zhang H, Bai S, Wang Y, et al. (2011) Lentiviral vector-mediated PAX6 overexpression promotes growth and inhibits apoptosis of human retinoblastoma cells. Invest Ophthalmol Vis Sci 52: 8393–8400. doi: 10.1167/iovs.11-8139 21948554
65. Riazuddin S, Belyantseva IA, Giese AP, Lee K, Indzhykulian AA, et al. (2012) Alterations of the CIB2 calcium- and integrin-binding protein cause Usher syndrome type 1J and nonsyndromic deafness DFNB48. Nat Genet 44: 1265–1271. doi: 10.1038/ng.2426 23023331
66. Jaworek TJ, Richard EM, Ivanova AA, Giese AP, Choo DI, et al. (2013) An alteration in ELMOD3, an Arl2 GTPase-activating protein, is associated with hearing impairment in humans. PLoS Genet 9: e1003774. doi: 10.1371/journal.pgen.1003774 24039609
67. Gong S, Peng Y, Jiang P, Wang M, Fan M, et al. (2014) A deafness-associated tRNAHis mutation alters the mitochondrial function, ROS production and membrane potential. Nucleic Acids Res 42: 8039–8048. doi: 10.1093/nar/gku466 24920829
68. Kohrer C, Rajbhandary UL (2008) The many applications of acid urea polyacrylamide gel electrophoresis to studies of tRNAs and aminoacyl-tRNA synthetases. Methods 44: 129–138. doi: 10.1016/j.ymeth.2007.10.006 18241794
69. Mullen PJ, Zahno A, Lindinger P, Maseneni S, Felser A, et al. (2011) Susceptibility to simvastatin-induced toxicity is partly determined by mitochondrial respiration and phosphorylation state of Akt. Biochim Biophys Acta 1813: 2079–2087. doi: 10.1016/j.bbamcr.2011.07.019 21839782
70. Trounce IA, Kim YL, Jun AS, Wallace DC (1996) Assessment of mitochondrial oxidative phosphorylation in patient muscle biopsies, lymphoblasts, and transmitochondrial cell lines. Methods Enzymol 264: 484–509. 8965721
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