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Mechanism of Suppression of Chromosomal Instability by DNA Polymerase POLQ


The reason for the hypersensitivity of POLQ-defective mammalian cells to ionizing radiation has been elusive. Here we show that POLQ-defective mammalian cells are selectively susceptible to double-strand breaks in DNA. We present experiments in mammalian cells showing that a specific double-strand break repair pathway is POLQ-dependent. To analyze the repair function in more detail, we examined class switch joining between DNA segments in antibody genes. Insertions of DNA bases are sometimes found at the joins between such segments, but the origin of these insertions has been mysterious. We show that this class of insertion joins during immunoglobulin class-switching is entirely POLQ-dependent. In experiments with purified human POLQ protein, we found a novel biochemical mechanism explaining the formation of the insertions. POLQ has a unique biochemical ability to extend DNA with minimal base pairing. Finally, we examined the biological consequences for chromosome stability. Unexpectedly, the Burkitt lymphoma translocation (a major cancer-associated genome instability) is enhanced in the absence of POLQ. This alters the current view about the action of DNA end joining in mammalian cells, revealing that a POLQ-dependent DNA repair pathway combats potentially damaging chromosome translocations.


Vyšlo v časopise: Mechanism of Suppression of Chromosomal Instability by DNA Polymerase POLQ. PLoS Genet 10(10): e32767. doi:10.1371/journal.pgen.1004654
Kategorie: Research Article
prolekare.web.journal.doi_sk: https://doi.org/10.1371/journal.pgen.1004654

Souhrn

The reason for the hypersensitivity of POLQ-defective mammalian cells to ionizing radiation has been elusive. Here we show that POLQ-defective mammalian cells are selectively susceptible to double-strand breaks in DNA. We present experiments in mammalian cells showing that a specific double-strand break repair pathway is POLQ-dependent. To analyze the repair function in more detail, we examined class switch joining between DNA segments in antibody genes. Insertions of DNA bases are sometimes found at the joins between such segments, but the origin of these insertions has been mysterious. We show that this class of insertion joins during immunoglobulin class-switching is entirely POLQ-dependent. In experiments with purified human POLQ protein, we found a novel biochemical mechanism explaining the formation of the insertions. POLQ has a unique biochemical ability to extend DNA with minimal base pairing. Finally, we examined the biological consequences for chromosome stability. Unexpectedly, the Burkitt lymphoma translocation (a major cancer-associated genome instability) is enhanced in the absence of POLQ. This alters the current view about the action of DNA end joining in mammalian cells, revealing that a POLQ-dependent DNA repair pathway combats potentially damaging chromosome translocations.


Zdroje

1. LangeSS, TakataK, WoodRD (2011) DNA polymerases and cancer. Nat Rev Cancer 11: 96–110.

2. Garcia-GomezS, ReyesA, Martinez-JimenezMI, ChocronES, MouronS, et al. (2013) PrimPol, an Archaic Primase/Polymerase Operating in Human Cells. Mol Cell 52: 541–553.

3. YousefzadehM, WoodR (2013) DNA polymerase POLQ and cellular defense against DNA damage. DNA Repair 12: 1–9.

4. SekiM, MariniF, WoodRD (2003) POLQ (Pol θ), a DNA polymerase and DNA-dependent ATPase in human cells. Nucleic Acids Res 31: 6117–6126.

5. SekiM, MasutaniC, YangLW, SchuffertA, IwaiS, et al. (2004) High-efficiency bypass of DNA damage by human DNA polymerase Q. EMBO J 23: 4484–4494.

6. YoonJH, Roy ChoudhuryJ, ParkJ, PrakashS, PrakashL (2014) A role for DNA polymerase theta in promoting replication through oxidative DNA lesion, thymine glycol, in human cells. J Biol Chem 289: 13177–13185.

7. YoshimuraM, KohzakiM, NakamuraJ, AsagoshiK, SonodaE, et al. (2006) Vertebrate POLQ and POL beta cooperate in base excision repair of oxidative DNA damage. Mol Cell 24: 115–125.

8. PrasadR, LongleyMJ, ShariefFS, HouEW, CopelandWC, et al. (2009) Human DNA polymerase theta possesses 5′-dRP lyase activity and functions in single-nucleotide base excision repair in vitro. Nucleic Acids Res 37: 1868–1877.

9. Fernandez-VidalA, Guitton-SertL, CadoretJC, DracM, SchwobE, et al. (2014) A role for DNA polymerase theta in the timing of DNA replication. Nature Communications 5: 4285.

10. HarrisPV, MazinaOM, LeonhardtEA, CaseRB, BoydJB, et al. (1996) Molecular cloning of Drosophila mus308, a gene involved in DNA cross-link repair with homology to prokaryotic DNA polymerase I genes. Mol Cell Biol 16: 5764–5771.

11. MuzziniDM, PlevaniP, BoultonSJ, CassataG, MariniF (2008) Caenorhabditis elegans POLQ-1 and HEL-308 function in two distinct DNA interstrand cross-link repair pathways. DNA Repair (Amst) 7: 941–950.

12. GoffJP, ShieldsDS, SekiM, ChoiS, EpperlyMW, et al. (2009) Lack of DNA polymerase theta (POLQ) radiosensitizes bone marrow stromal cells in vitro and increases reticulocyte micronuclei after total-body irradiation. Radiat Res 172: 165–174.

13. ShimaN, MunroeRJ, SchimentiJC (2004) The mouse genomic instability mutation chaos1 is an allele of Polq that exhibits genetic interaction with Atm. Mol Cell Biol 24: 10381–10389.

14. ShimaN, HartfordSA, DuffyT, WilsonLA, SchimentiKJ, et al. (2003) Phenotype-based identification of mouse chromosome instability mutants. Genetics 163: 1031–1040.

15. KassEM, JasinM (2010) Collaboration and competition between DNA double-strand break repair pathways. FEBS Lett 584: 3703–3708.

16. RassoolFV, TomkinsonAE (2010) Targeting abnormal DNA double strand break repair in cancer. Cell Mol Life Sci 67: 3699–3710.

17. ThompsonLH (2012) Recognition, signaling, and repair of DNA double-strand breaks produced by ionizing radiation in mammalian cells: The molecular choreography. Mutation Research doi:10.1016/j.mrrev.2012.06.002

18. RamsdenDA, AsagoshiK (2012) DNA polymerases in nonhomologous end joining: are there any benefits to standing out from the crowd? Environmental and molecular mutagenesis 53: 741–751.

19. DecottigniesA (2013) Alternative end-joining mechanisms: a historical perspective. Front Genet 4: 48.

20. BoboilaC, AltFW, SchwerB (2012) Classical and alternative end-joining pathways for repair of lymphocyte-specific and general DNA double-strand breaks. Adv Immunol 116: 1–49.

21. SimsekD, JasinM (2010) Alternative end-joining is suppressed by the canonical NHEJ component Xrcc4-ligase IV during chromosomal translocation formation. Nat Struct Mol Biol 17: 410–416.

22. ZhangY, JasinM (2011) An essential role for CtIP in chromosomal translocation formation through an alternative end-joining pathway. Nat Struct Mol Biol 18: 80–84.

23. HigginsGS, PrevoR, LeeYF, HelledayT, MuschelRJ, et al. (2010) A small interfering RNA screen of genes involved in DNA repair identifies tumor-specific radiosensitization by POLQ knockdown. Cancer Res 70: 2984–2993.

24. HuangKC, GaoH, YamasakiEF, GrabowskiDR, LiuS, et al. (2001) Topoisomerase II poisoning by ICRF-193. J Biol Chem 276: 44488–44494.

25. FarmerH, McCabeN, LordCJ, TuttAN, JohnsonDA, et al. (2005) Targeting the DNA repair defect in BRCA mutant cells as a therapeutic strategy. Nature 434: 917–921.

26. ZanH, ShimaN, XuZ, Al-QahtaniA, EvingerAJIii, et al. (2005) The translesion DNA polymerase θ plays a dominant role in immunoglobulin gene somatic hypermutation. EMBO J 24: 3757–3769.

27. PatelPH, LoebLA (2000) DNA polymerase active site is highly mutable: evolutionary consequences. Proc Natl Acad Sci U S A 97: 5095–5100.

28. MariniF, WoodRD (2002) A human DNA helicase homologous to the DNA cross-link sensitivity protein Mus308. J Biol Chem 277: 8716–8723.

29. MartomoSA, SaribasakH, YokoiM, HanaokaF, GearhartPJ (2008) Reevaluation of the role of DNA polymerase theta in somatic hypermutation of immunoglobulin genes. DNA Repair (Amst) 7: 1603–1608.

30. LiY, GaoX, WangJY (2011) Comparison of two POLQ mutants reveals that a polymerase-inactive POLQ retains significant function in tolerance to etoposide and gamma-irradiation in mouse B cells. Genes Cells 16: 973–983.

31. CallenE, JankovicM, WongN, ZhaS, ChenHT, et al. (2009) Essential role for DNA-PKcs in DNA double-strand break repair and apoptosis in ATM-deficient lymphocytes. Mol Cell 34: 285–297.

32. SymingtonLS, GautierJ (2011) Double-strand break end resection and repair pathway choice. Annual review of genetics 45: 247–271.

33. Frank-VaillantM, MarcandS (2002) Transient stability of DNA ends allows nonhomologous end joining to precede homologous recombination. Molecular cell 10: 1189–1199.

34. LeeK, LeeSE (2007) Saccharomyces cerevisiae Sae2- and Tel1-dependent single-strand DNA formation at DNA break promotes microhomology-mediated end joining. Genetics 176: 2003–2014.

35. BennardoN, ChengA, HuangN, StarkJM (2008) Alternative-NHEJ is a mechanistically distinct pathway of mammalian chromosome break repair. PLoS genetics 4: e1000110.

36. HoggM, SekiM, WoodRD, DoubliéS, WallaceSS (2011) Lesion bypass activity of DNA polymerase theta (POLQ) is an intrinsic property of the pol domain and depends on unique sequence inserts. J Mol Biol 405: 642–652.

37. HoggM, Sauer-ErikssonAE, JohanssonE (2012) Promiscuous DNA synthesis by human DNA polymerase theta. Nucleic Acids Res 40: 2611–2622.

38. SekiM, WoodRD (2008) DNA polymerase theta (POLQ) can extend from mismatches and from bases opposite a (6-4) photoproduct. DNA Repair (Amst) 7: 119–127.

39. AranaME, SekiM, WoodRD, RogozinIB, KunkelTA (2008) Low-fidelity DNA synthesis by human DNA polymerase theta. Nucleic Acids Res 36: 3847–3856.

40. KleinIA, ReschW, JankovicM, OliveiraT, YamaneA, et al. (2011) Translocation-capture sequencing reveals the extent and nature of chromosomal rearrangements in B lymphocytes. Cell 147: 95–106.

41. ChiarleR, ZhangY, FrockRL, LewisSM, MolinieB, et al. (2011) Genome-wide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in B cells. Cell 147: 107–119.

42. RobbianiDF, BothmerA, CallenE, Reina-San-MartinB, DorsettY, et al. (2008) AID is required for the chromosomal breaks in c-myc that lead to c-myc/IgH translocations. Cell 135: 1028–1038.

43. SimsekD, BrunetE, WongSY, KatyalS, GaoY, et al. (2011) DNA ligase III promotes alternative nonhomologous end-joining during chromosomal translocation formation. PLoS Genet 7: e1002080.

44. BoboilaC, OksenychV, GostissaM, WangJH, ZhaS, et al. (2012) Robust chromosomal DNA repair via alternative end-joining in the absence of X-ray repair cross-complementing protein 1 (XRCC1). Proc Natl Acad Sci U S A 109: 2473–2478.

45. FergusonDO, SekiguchiJM, ChangS, FrankKM, GaoY, et al. (2000) The nonhomologous end-joining pathway of DNA repair is required for genomic stability and the suppression of translocations. Proc Natl Acad Sci U S A 97: 6630–6633.

46. KottemannMC, SmogorzewskaA (2013) Fanconi anaemia and the repair of Watson and Crick DNA crosslinks. Nature 493: 356–363.

47. ChanSH, YuAM, McVeyM (2010) Dual Roles for DNA Polymerase Theta in Alternative End-Joining Repair of Double-Strand Breaks in Drosophila. PLoS Genet 6: e1001005.

48. DerianoL, RothDB (2013) Modernizing the nonhomologous end-joining repertoire: alternative and classical NHEJ share the stage. Annual review of genetics 47: 433–455.

49. FritP, BarbouleN, YuanY, GomezD, CalsouP (2014) Alternative end-joining pathway(s): bricolage at DNA breaks. DNA Repair (Amst) 17: 81–97.

50. ArakawaH, BednarT, WangM, PaulK, MladenovE, et al. (2012) Functional redundancy between DNA ligases I and III in DNA replication in vertebrate cells. Nucleic Acids Res 40: 2599–2610.

51. SimsekD, FurdaA, GaoY, ArtusJ, BrunetE, et al. (2011) Crucial role for DNA ligase III in mitochondria but not in Xrcc1-dependent repair. Nature 471: 245–248.

52. HanL, MasaniS, HsiehCL, YuK (2014) DNA ligase I is not essential for mammalian cell viability. Cell Rep 7: 316–320.

53. WhiteTB, LambowitzAM (2012) The retrohoming of linear group II intron RNAs in Drosophila melanogaster occurs by both DNA ligase 4-dependent and -independent mechanisms. PLoS Genet 8: e1002534.

54. KooleW, van SchendelR, KarambelasAE, van HeterenJT, OkiharaKL, et al. (2014) A Polymerase Theta-dependent repair pathway suppresses extensive genomic instability at endogenous G4 DNA sites. Nat Commun 5: 3216.

55. YangY, McBrideKM, HensleyS, LuY, ChedinF, et al. (2014) Arginine methylation facilitates the recruitment of TOP3B to chromatin to prevent R loop accumulation. Molecular cell 53: 484–497.

56. DorsettY, McBrideKM, JankovicM, GazumyanA, ThaiTH, et al. (2008) MicroRNA-155 suppresses activation-induced cytidine deaminase-mediated Myc-Igh translocation. Immunity 28: 630–638.

57. RoerinkSF, van SchendelR, TijstermanM (2014) Polymerase theta-mediated end joining of replication-associated DNA breaks in C. elegans. Genome Res 24: 954–962.

58. WeinstockDM, ElliottB, JasinM (2006) A model of oncogenic rearrangements: differences between chromosomal translocation mechanisms and simple double-strand break repair. Blood 107: 777–780.

59. BuntingSF, NussenzweigA (2013) End-joining, translocations and cancer. Nat Rev Cancer 13: 443–454.

60. LeméeF, BergoglioV, Fernandez-VidalA, Machado-SilvaA, PillaireM-J, et al. (2010) POLQ up-regulation is associated with poor survival in breast cancer, perturbs DNA replication and promotes genetic instability. Proc Natl Acad Sci (USA) 107: 13390–13395.

61. LangeSS, WittschiebenJP, WoodRD (2012) DNA polymerase ζ is required for proliferation of normal mammalian cells. Nucleic Acids Res 40: 4473–4482.

62. SobolRW, HortonJK, KuhnR, GuH, SinghalRK, et al. (1996) Requirement of mammalian DNA polymerase β in base excision repair. Nature 379: 183–186.

63. WardIM, MinnK, JordaKG, ChenJ (2003) Accumulation of checkpoint protein 53BP1 at DNA breaks involves its binding to phosphorylated histone H2AX. The Journal of biological chemistry 278: 19579–19582.

64. MartiTM, HefnerE, FeeneyL, NataleV, CleaverJE (2006) H2AX phosphorylation within the G1 phase after UV irradiation depends on nucleotide excision repair and not DNA double-strand breaks. Proc Natl Acad Sci U S A 103: 9891–9896.

65. HarriganJA, BelotserkovskayaR, CoatesJ, DimitrovaDS, PoloSE, et al. (2011) Replication stress induces 53BP1-containing OPT domains in G1 cells. The Journal of cell biology 193: 97–108.

66. LukasC, SavicV, Bekker-JensenS, DoilC, NeumannB, et al. (2011) 53BP1 nuclear bodies form around DNA lesions generated by mitotic transmission of chromosomes under replication stress. Nature cell biology 13: 243–253.

67. Reina-San-MartinB, DifilippantonioS, HanitschL, MasilamaniRF, NussenzweigA, et al. (2003) H2AX is required for recombination between immunoglobulin switch regions but not for intra-switch region recombination or somatic hypermutation. J Exp Med 197: 1767–1778.

68. KovalchukAL, MullerJR, JanzS (1997) Deletional remodeling of c-myc-deregulating chromosomal translocations. Oncogene 15: 2369–2377.

69. GazumyanA, TimachovaK, YuenG, SidenE, Di VirgilioM, et al. (2011) Amino-terminal phosphorylation of activation-induced cytidine deaminase suppresses c-myc/IgH translocation. Mol Cell Biol 31: 442–449.

70. LovedayC, TurnbullC, RamsayE, HughesD, RuarkE, et al. (2011) Germline mutations in RAD51D confer susceptibility to ovarian cancer. Nature Genetics 43: 879–882.

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