The DAF-16 FOXO Transcription Factor Regulates to Modulate Stress Resistance in , Linking Insulin/IGF-1 Signaling to Protein N-Terminal Acetylation
What are the mechanisms used by animals to cope with stressful environments that inflict damage or restrict essential processes such as growth, development, and reproduction? One strategy is changes in physiology that increase stress resistance, and an extreme version of this strategy is diapause, an alternative developmental state that is enduring and stress resistant. In the nematode C. elegans, stress tolerance and entry into a diapause state called dauer larvae are mediated by the conserved insulin/IGF-1 pathway. Specifically, the FOXO transcription factor DAF-16 promotes stress tolerance and dauer larvae development. However, the targets of DAF-16 that mediate these processes remain largely elusive. Using an unbiased forward genetic screen to discover new mediators of stress tolerance, we identified natc-1, a novel target of DAF-16 and the insulin/IGF-1 pathway. natc-1 encodes a conserved subunit of the N-terminal acetyltransferase C (NAT) complex. The NatC complex modifies target proteins by acetylating the N-terminus. We demonstrated that natc-1 mediates diapause entry and stress tolerance. Furthermore, we elucidated regulation of NatC by demonstrating that natc-1 is a direct transcriptional target that is repressed by DAF-16. These findings may be relevant to other animals because both the insulin/IGF-1 signaling pathway and the NAT system are conserved during evolution.
Vyšlo v časopise:
The DAF-16 FOXO Transcription Factor Regulates to Modulate Stress Resistance in , Linking Insulin/IGF-1 Signaling to Protein N-Terminal Acetylation. PLoS Genet 10(10): e32767. doi:10.1371/journal.pgen.1004703
Kategorie:
Research Article
prolekare.web.journal.doi_sk:
https://doi.org/10.1371/journal.pgen.1004703
Souhrn
What are the mechanisms used by animals to cope with stressful environments that inflict damage or restrict essential processes such as growth, development, and reproduction? One strategy is changes in physiology that increase stress resistance, and an extreme version of this strategy is diapause, an alternative developmental state that is enduring and stress resistant. In the nematode C. elegans, stress tolerance and entry into a diapause state called dauer larvae are mediated by the conserved insulin/IGF-1 pathway. Specifically, the FOXO transcription factor DAF-16 promotes stress tolerance and dauer larvae development. However, the targets of DAF-16 that mediate these processes remain largely elusive. Using an unbiased forward genetic screen to discover new mediators of stress tolerance, we identified natc-1, a novel target of DAF-16 and the insulin/IGF-1 pathway. natc-1 encodes a conserved subunit of the N-terminal acetyltransferase C (NAT) complex. The NatC complex modifies target proteins by acetylating the N-terminus. We demonstrated that natc-1 mediates diapause entry and stress tolerance. Furthermore, we elucidated regulation of NatC by demonstrating that natc-1 is a direct transcriptional target that is repressed by DAF-16. These findings may be relevant to other animals because both the insulin/IGF-1 signaling pathway and the NAT system are conserved during evolution.
Zdroje
1. HuPJ (2007) Dauer. WormBook 1–19 doi:10.1895/wormbook.1.144.1
2. BraeckmanBP, HouthoofdK, VanfleterenJR (2001) Insulin-like signaling, metabolism, stress resistance and aging in Caenorhabditis elegans. Mech Ageing Dev 122: 673–693.
3. KimuraKD, TissenbaumHA, LiuY, RuvkunG (1997) daf-2, an insulin receptor-like gene that regulates longevity and diapause in Caenorhabditis elegans. Science 277: 942–946 doi:10.1126/science.277.5328.942
4. MorrisJZ, TissenbaumHA, RuvkunG (1996) A phosphatidylinositol-3-OH kinase family member regulating longevity and diapause in Caenorhabditis elegans. Nature 382: 536–539 doi:10.1038/382536a0
5. HondaY, HondaS (1999) The daf-2 gene network for longevity regulates oxidative stress resistance and Mn-superoxide dismutase gene expression in Caenorhabditis elegans. FASEB J 13: 1385–1393.
6. RiddleDL, SwansonMM, AlbertPS (1981) Interacting genes in nematode dauer larva formation. Nature 290: 668–671.
7. LinK, DormanJB, RodanA, KenyonC (1997) daf-16: An HNF-3/forkhead family member that can function to double the life-span of Caenorhabditis elegans. Science 278: 1319–1322.
8. OggS, ParadisS, GottliebS, PattersonGI, LeeL, et al. (1997) The Fork head transcription factor DAF-16 transduces insulin-like metabolic and longevity signals in C. elegans. Nature 389: 994–999 doi:10.1038/40194
9. MurphyCT (2006) The search for DAF-16/FOXO transcriptional targets: Approaches and discoveries. Exp Gerontol 41: 910–921 doi:10.1016/j.exger.2006.06.040
10. YuH, LarsenPL (2001) DAF-16-dependent and independent expression targets of DAF-2 insulin receptor-like pathway in Caenorhabditis elegans include FKBPs. Journal of Molecular Biology 314: 1017–1028 doi:10.1006/jmbi.2000.5210
11. LeeSS, KennedyS, TolonenAC, RuvkunG (2003) DAF-16 target genes that control C. elegans life-span and metabolism. Science 300: 644–647 doi:10.1126/science.1083614
12. OokumaS, FukudaM, NishidaE (2003) Identification of a DAF-16 transcriptional target gene, scl-1, that regulates longevity and stress resistance in Caenorhabditis elegans. Curr Biol 13: 427–431.
13. McElweeJ, BubbK, ThomasJH (2003) Transcriptional outputs of the Caenorhabditis elegans forkhead protein DAF-16. Aging Cell 2: 111–121.
14. MurphyCT, McCarrollSA, BargmannCI, FraserA, KamathRS, et al. (2003) Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegans. Nature 424: 277–283 doi:10.1038/nature01789
15. Wook OhS, MukhopadhyayA, DixitBL, RahaT, GreenMR, et al. (2005) Identification of direct DAF-16 targets controlling longevity, metabolism and diapause by chromatin immunoprecipitation. Nat Genet 38: 251–257 doi:10.1038/ng1723
16. YuRX, LiuJ, TrueN, WangW (2008) Identification of Direct Target Genes Using Joint Sequence and Expression Likelihood with Application to DAF-16. PLoS ONE 3: e1821 doi:10.1371/journal.pone.0001821.s008
17. JensenVL, SimonsenKT, LeeY-H, ParkD, RiddleDL (2010) RNAi screen of DAF-16/FOXO target genes in C. elegans links pathogenesis and dauer formation. PLoS ONE 5: e15902 doi:10.1371/journal.pone.0015902
18. FinchCE, RuvkunG (2001) The genetics of aging. Annual review of genomics and human genetics 2: 435–462.
19. GarofaloRS (2002) Genetic analysis of insulin signaling in Drosophila. Trends Endocrinol Metab 13: 156–162.
20. NakaeJ, BiggsWH, KitamuraT, CaveneeWK, WrightCVE, et al. (2002) Regulation of insulin action and pancreatic beta-cell function by mutated alleles of the gene encoding forkhead transcription factor Foxo1. Nat Genet 32: 245–253 doi:10.1038/ng890
21. HolzenbergerM, DupontJ, DucosB, LeneuveP, GéloënA, et al. (2003) IGF-1 receptor regulates lifespan and resistance to oxidative stress in mice. Nature 421: 182–187 doi:10.1038/nature01298
22. BlüherM, KahnBB, KahnCR (2003) Extended longevity in mice lacking the insulin receptor in adipose tissue. Science 299: 572–574 doi:10.1126/science.1078223
23. YamasakiS, Sakata-SogawaK, HasegawaA, SuzukiT, KabuK, et al. (2007) Zinc is a novel intracellular second messenger. The Journal of Cell Biology 177: 637–645 doi:10.1083/jcb.200702081
24. MurakamiM, HiranoT (2008) Intracellular zinc homeostasis and zinc signaling. Cancer Science 99: 1515–1522 doi:10.1111/j.1349-7006.2008.00854.x
25. ValleeBL, FalchukKH (1993) The biochemical basis of zinc physiology. Physiol Rev 73: 79–118.
26. HambidgeM (2000) Human zinc deficiency. J Nutr 130: 1344S–9S.
27. ChowanadisaiW, KelleherSL, LönnerdalB (2005) Zinc deficiency is associated with increased brain zinc import and LIV-1 expression and decreased ZnT-1 expression in neonatal rats. J Nutr 135: 1002–1007.
28. HambidgeKM, KrebsNF (2007) Zinc deficiency: a special challenge. J Nutr 137: 1101–1105.
29. MaverakisE, FungMA, LynchPJ, DrazninM, MichaelDJ, et al. (2007) Acrodermatitis enteropathica and an overview of zinc metabolism. J Am Acad Dermatol 56: 116–124 doi:10.1016/j.jaad.2006.08.015
30. KohJY, SuhSW, GwagBJ, HeYY, HsuCY, et al. (1996) The role of zinc in selective neuronal death after transient global cerebral ischemia. Science 272: 1013–1016.
31. NiesDH (2007) Biochemistry. How cells control zinc homeostasis. Science 317: 1695–1696 doi:10.1126/science.1149048
32. FinneyLA, O'HalloranTV (2003) Transition metal speciation in the cell: insights from the chemistry of metal ion receptors. Science 300: 931–936 doi:10.1126/science.1085049
33. PophamJD, WebsterJM (1979) Cadmium toxicity in the free-living nematode, Caenorhabditis elegans. Environ Res 20: 183–191.
34. WangD, WangY (2008) Nickel sulfate induces numerous defects in Caenorhabditis elegans that can also be transferred to progeny. Environ Pollut 151: 585–592 doi:10.1016/j.envpol.2007.04.003
35. BarsyteD, LovejoyDA, LithgowGJ (2001) Longevity and heavy metal resistance in daf-2 and age-1 long-lived mutants of Caenorhabditis elegans. FASEB J 15: 627–634 doi:10.1096/fj.99-0966com
36. BruinsmaJJ, SchneiderDL, DavisDE, KornfeldK (2008) Identification of Mutations in Caenorhabditis elegans That Cause Resistance to High Levels of Dietary Zinc and Analysis Using a Genomewide Map of Single Nucleotide Polymorphisms Scored by Pyrosequencing. Genetics 179: 811–828 doi:10.1534/genetics.107.084384
37. MurphyJT, BruinsmaJJ, SchneiderDL, CollierS, GuthrieJ, et al. (2011) Histidine Protects Against Zinc and Nickel Toxicity in Caenorhabditis elegans. PLoS Genet 7: e1002013 doi:10.1371/journal.pgen.1002013.t001
38. LithgowGJ, WhiteTM, MelovS, JohnsonTE (1995) Thermotolerance and extended life-span conferred by single-gene mutations and induced by thermal stress. Proc Natl Acad Sci USA 92: 7540–7544.
39. PolevodaB, NorbeckJ, TakakuraH, BlombergA, ShermanF (1999) Identification and specificities of N-terminal acetyltransferases from Saccharomyces cerevisiae. EMBO J 18: 6155–6168 doi:10.1093/emboj/18.21.6155
40. PolevodaB, ShermanF (2000) Nalpha -terminal acetylation of eukaryotic proteins. J Biol Chem 275: 36479–36482 doi:10.1074/jbc.R000023200
41. GersteinMB, LuZJ, Van NostrandEL, ChengC, ArshinoffBI, et al. (2010) Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project. Science 330: 1775–1787 doi:10.1126/science.1196914
42. RiedelCG, DowenRH, LourencoGF, KirienkoNV, HeimbucherT, et al. (2013) DAF-16 employs the chromatin remodeller SWI/SNF to promote stress resistance and longevity. Nat Cell Biol 15: 491–501 doi:10.1038/ncb2720
43. MoermanDG, BarsteadRJ (2008) Towards a mutation in every gene in Caenorhabditis elegans. Brief Funct Genomic Proteomic 7: 195–204 doi:10.1093/bfgp/eln016
44. PolevodaB, ShermanF (2001) NatC Nalpha-terminal acetyltransferase of yeast contains three subunits, Mak3p, Mak10p, and Mak31p. J Biol Chem 276: 20154–20159 doi:10.1074/jbc.M011440200
45. RuanJ, LiH, ChenZ, CoghlanA, CoinLJM, et al. (2008) TreeFam: 2008 Update. Nucleic Acids Res 36: D735–D740 doi:10.1093/nar/gkm1005
46. KahnNW, ReaSL, MoyleS, KellA, JohnsonTE (2008) Proteasomal dysfunction activates the transcription factor SKN-1 and produces a selective oxidative-stress response in Caenorhabditis elegans. Biochem J 409: 205–213 doi:10.1042/BJ20070521
47. LinK, HsinH, LibinaN, KenyonC (2001) Regulation of the Caenorhabditis elegans longevity protein DAF-16 by insulin/IGF-1 and germline signaling. Nat Genet 28: 139–145 doi:10.1038/88850
48. LeeRY, HenchJ, RuvkunG (2001) Regulation of C. elegans DAF-16 and its human ortholog FKHRL1 by the daf-2 insulin-like signaling pathway. Curr Biol 11: 1950–1957.
49. MaloneEA, ThomasJH (1994) A screen for nonconditional dauer-constitutive mutations in Caenorhabditis elegans. Genetics 136: 879–886.
50. KenyonC, ChangJ, GenschE, RudnerA, TabtiangR (1993) A C. elegans mutant that lives twice as long as wild type. Nature 366: 461–464 doi:10.1038/366461a0
51. MurakamiS, JohnsonTE (1996) A genetic pathway conferring life extension and resistance to UV stress in Caenorhabditis elegans. Genetics 143: 1207–1218.
52. MuñozMJ, RiddleDL (2003) Positive selection of Caenorhabditis elegans mutants with increased stress resistance and longevity. Genetics 163: 171–180.
53. ZhongM, NiuW, LuZJ, SarovM, MurrayJI, et al. (2010) Genome-Wide Identification of Binding Sites Defines Distinct Functions for Caenorhabditis elegans PHA-4/FOXA in Development and Environmental Response. PLoS Genet 6: e1000848 doi:10.1371/journal.pgen.1000848.s017
54. HunterT, BannisterWH, HunterGJ (1997) Cloning, expression, and characterization of two manganese superoxide dismutases from Caenorhabditis elegans. J Biol Chem 272: 28652–28659 doi:10.1074/jbc.272.45.28652
55. LibinaN, BermanJR, KenyonC (2003) Tissue-specific activities of C. elegans DAF-16 in the regulation of lifespan. Cell 115: 489–502.
56. Van DammeP, HoleK, Pimenta-MarquesA, HelsensK, VandekerckhoveJ, et al. (2011) NatF Contributes to an Evolutionary Shift in Protein N-Terminal Acetylation and Is Important for Normal Chromosome Segregation. PLoS Genet 7: e1002169 doi:10.1371/journal.pgen.1002169.t002
57. StarheimKK, GevaertK, ArnesenT (2012) Protein N-terminal acetyltransferases: when the start matters. Trends Biochem Sci 37: 152–161 doi:10.1016/j.tibs.2012.02.003
58. RopeAF, WangK, EvjenthR, XingJ, JohnstonJJ, et al. (2011) Using VAAST to identify an X-linked disorder resulting in lethality in male infants due to N-terminal acetyltransferase deficiency. Am J Hum Genet 89: 28–43 doi:10.1016/j.ajhg.2011.05.017
59. UetzPP, GiotLL, CagneyGG, MansfieldTAT, JudsonRSR, et al. (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403: 623–627 doi:10.1038/35001009
60. RigautG, ShevchenkoA, RutzB, WilmM, MannM, et al. (1999) A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol 17: 1030–1032 doi:10.1038/13732
61. LeeYJ, WicknerRB (1992) MAK10, a glucose-repressible gene necessary for replication of a dsRNA virus of Saccharomyces cerevisiae, has T cell receptor alpha-subunit motifs. Genetics 132: 87–96.
62. TerceroJC, WicknerRB (1992) MAK3 encodes an N-acetyltransferase whose modification of the L-A gag NH2 terminus is necessary for virus particle assembly. J Biol Chem 267: 20277–20281.
63. PesaresiP, GardnerNA, MasieroS, DietzmannA, EichackerL, et al. (2003) Cytoplasmic N-terminal protein acetylation is required for efficient photosynthesis in Arabidopsis. Plant Cell 15: 1817–1832.
64. WenzlauJM, GarlPJ, SimpsonP, StenmarkKR, WestJ, et al. (2006) Embryonic growth-associated protein is one subunit of a novel N-terminal acetyltransferase complex essential for embryonic vascular development. Circ Res 98: 846–855 doi:10.1161/01.RES.0000214539.86593.7a
65. YiXJ, LiXF, YuFS (2000) A novel epithelial wound-related gene is abundantly expressed in developing rat cornea and skin. Curr Eye Res 20: 430–440.
66. StarheimKK, GromykoD, EvjenthR, RyningenA, VarhaugJE, et al. (2009) Knockdown of Human N -Terminal Acetyltransferase Complex C Leads to p53-Dependent Apoptosis and Aberrant Human Arl8b Localization. Mol Cell Biol 29: 3569–3581 doi:10.1128/MCB.01909-08
67. BruinsmaJJ, JirakulapornT, MuslinAJ, KornfeldK (2002) Zinc ions and cation diffusion facilitator proteins regulate Ras-mediated signaling. Dev Cell 2: 567–578.
68. YoderJH, ChongH, GuanK-L, HanM (2004) Modulation of KSR activity in Caenorhabditis elegans by Zn ions, PAR-1 kinase and PP2A phosphatase. EMBO J 23: 111–119 doi:10.1038/sj.emboj.7600025
69. RohHC, CollierS, GuthrieJ, RobertsonJD, KornfeldK (2012) Lysosome-related organelles in intestinal cells are a zinc storage site in C. elegans. Cell Metab 15: 88–99 doi:10.1016/j.cmet.2011.12.003
70. RohHC, CollierS, DeshmukhK, GuthrieJ, RobertsonJD, et al. (2013) ttm-1 Encodes CDF Transporters That Excrete Zinc from Intestinal Cells of C. elegans and Act in a Parallel Negative Feedback Circuit That Promotes Homeostasis. PLoS Genet 9: e1003522 doi:10.1371/journal.pgen.1003522.s004
71. Zeitoun-GhandourS, CharnockJM, HodsonME, LeszczyszynOI, BlindauerCA, et al. (2010) The two Caenorhabditis elegans metallothioneins (CeMT-1 and CeMT-2) discriminate between essential zinc and toxic cadmium. FEBS Journal 277: 2531–2542 doi:10.1111/j.1742-4658.2010.07667.x
72. IshiiN, FujiiM, HartmanPS, TsudaM, YasudaK, et al. (1998) A mutation in succinate dehydrogenase cytochrome b causes oxidative stress and ageing in nematodes. Nature 394: 694–697 doi:10.1038/29331
73. Vázquez-ManriqueRP, González-CaboP, RosS, AzizH, BaylisHA, et al. (2006) Reduction of Caenorhabditis elegans frataxin increases sensitivity to oxidative stress, reduces lifespan, and causes lethality in a mitochondrial complex II mutant. The FASEB Journal 20: 172–174 doi:10.1096/fj.05-4212fje
74. FielenbachN, AntebiA (2008) C. elegans dauer formation and the molecular basis of plasticity. Genes Dev 22: 2149–2165 doi:10.1101/gad.1701508
75. RottiersV, MotolaDL, GerischB, CumminsCL, NishiwakiK, et al. (2006) Hormonal control of C. elegans dauer formation and life span by a Rieske-like oxygenase. Dev Cell 10: 473–482 doi:10.1016/j.devcel.2006.02.008
76. Grime JP (1977) Evidence for the existence of three primary strategies in plants and its relevance to ecological and evolutionary theory. American Naturalist: 1169–1194.
77. ChapinFS (1980) The mineral nutrition of wild plants. Annual review of ecology and systematics 11: 233–260.
78. BryantJP, ChapinFSIII, KleinDR (1983) Carbon/nutrient balance of boreal plants in relation to vertebrate herbivory. Oikos 357–368.
79. ChapinFSIII, AutumnK, PugnaireF (1993) Evolution of suites of traits in response to environmental stress. American Naturalist S78–S92.
80. BrennerS (1974) The genetics of Caenorhabditis elegans. Genetics 77: 71–94.
81. CassadaRC, RussellRL (1975) The dauerlarva, a post-embryonic developmental variant of the nematode Caenorhabditis elegans. Dev Biol 46: 326–342.
82. KamathRS, Martinez-CamposM, ZipperlenP, FraserAG, AhringerJ (2001) Effectiveness of specific RNA-mediated interference through ingested double-stranded RNA in Caenorhabditis elegans. Genome Biol 2: RESEARCH0002 doi:10.1186/gb-2000-2-1-research0002
83. KamathRS, AhringerJ (2003) Genome-wide RNAi screening in Caenorhabditis elegans. Methods 30: 313–321.
84. MelloCC, KramerJM, StinchcombD, AmbrosV (1991) Efficient gene transfer in C.elegans: extrachromosomal maintenance and integration of transforming sequences. EMBO J 10: 3959–3970.
85. EdenE, NavonR, SteinfeldI, LipsonD, YakhiniZ (2009) GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists. BMC Bioinformatics 10: 48 doi:10.1186/1471-2105-10-48
86. DavisDE, RohHC, DeshmukhK, BruinsmaJJ, SchneiderDL, et al. (2009) The Cation Diffusion Facilitator Gene cdf-2 Mediates Zinc Metabolism in Caenorhabditis elegans. Genetics 182: 1015–1033 doi:10.1534/genetics.109.103614
87. SchmittgenTD, LivakKJ (2008) Analyzing real-time PCR data by the comparative CT method. Nat Protoc 3: 1101–1108 doi:10.1038/nprot.2008.73
88. GottliebS, RuvkunG (1994) daf-2, daf-16 and daf-23: genetically interacting genes controlling Dauer formation in Caenorhabditis elegans. Genetics 137: 107–120.
89. HondaY, TanakaM, HondaS (2008) Modulation of longevity and diapause by redox regulation mechanisms under the insulin-like signaling control in Caenorhabditis elegans. Exp Gerontol 43: 520–529 doi:10.1016/j.exger.2008.02.009
90. GemsD, SuttonAJ, SundermeyerML, AlbertPS, KingKV, et al. (1998) Two pleiotropic classes of daf-2 mutation affect larval arrest, adult behavior, reproduction and longevity in Caenorhabditis elegans. Genetics 150: 129–155.
Štítky
Genetika Reprodukčná medicínaČlánok vyšiel v časopise
PLOS Genetics
2014 Číslo 10
- Je „freeze-all“ pro všechny? Odborníci na fertilitu diskutovali na virtuálním summitu
- Gynekologové a odborníci na reprodukční medicínu se sejdou na prvním virtuálním summitu
Najčítanejšie v tomto čísle
- The Master Activator of IncA/C Conjugative Plasmids Stimulates Genomic Islands and Multidrug Resistance Dissemination
- A Splice Mutation in the Gene Causes High Glycogen Content and Low Meat Quality in Pig Skeletal Muscle
- Keratin 76 Is Required for Tight Junction Function and Maintenance of the Skin Barrier
- A Role for Taiman in Insect Metamorphosis